Wall clock time and date at job start Sun Mar 29 2020 21:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99955 * 2 1 4 4 H 1.48500 * 109.47040 * 270.00563 * 3 2 1 5 5 H 1.48499 * 109.46964 * 30.00511 * 3 2 1 6 6 H 1.48498 * 109.47291 * 150.00446 * 3 2 1 7 7 C 1.37874 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00263 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47418 * 179.97438 * 9 7 2 11 11 N 1.46892 * 109.47122 * 174.62317 * 10 9 7 12 12 C 1.46901 * 110.99797 * 74.65503 * 11 10 9 13 13 C 1.52991 * 117.50017 * 2.75646 * 12 11 10 14 14 C 1.52997 * 117.49784 * 294.09523 * 12 11 10 15 15 C 1.46905 * 111.00141 * 198.60583 * 11 10 9 16 16 C 1.53000 * 109.47390 * 176.04806 * 15 11 10 17 17 C 1.52996 * 109.47271 * 179.97438 * 16 15 11 18 18 C 1.53004 * 109.46807 * 60.00269 * 17 16 15 19 19 C 1.52998 * 109.47053 * 299.99524 * 18 17 16 20 20 C 1.52996 * 109.46853 * 56.04696 * 15 11 10 21 21 H 0.96997 * 120.00250 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46840 * 59.99240 * 9 7 2 23 23 H 1.08995 * 109.46982 * 299.99740 * 9 7 2 24 24 H 1.09007 * 109.46441 * 54.62452 * 10 9 7 25 25 H 1.08992 * 109.47195 * 294.62769 * 10 9 7 26 26 H 1.09001 * 115.54817 * 148.43043 * 12 11 10 27 27 H 1.09006 * 117.50151 * 0.02562 * 13 12 11 28 28 H 1.08998 * 117.50090 * 145.02109 * 13 12 11 29 29 H 1.08997 * 117.50079 * 214.98128 * 14 12 11 30 30 H 1.09001 * 117.50078 * 0.02562 * 14 12 11 31 31 H 1.08998 * 109.46897 * 296.04830 * 15 11 10 32 32 H 1.09004 * 109.46886 * 300.00243 * 16 15 11 33 33 H 1.09001 * 109.46773 * 60.00138 * 16 15 11 34 34 H 1.09000 * 109.47034 * 300.00609 * 17 16 15 35 35 H 1.08992 * 109.47236 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.47005 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47453 * 60.00021 * 18 17 16 38 38 H 1.09000 * 109.47866 * 300.00321 * 19 18 17 39 39 H 1.09000 * 109.47556 * 180.02562 * 19 18 17 40 40 H 1.08998 * 109.47631 * 300.00083 * 20 15 11 41 41 H 1.08998 * 109.47260 * 60.00356 * 20 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4847 -2.6385 -0.1313 12 6 6.1259 -2.2349 1.1272 13 6 5.2167 -1.9582 2.3262 14 6 5.9051 -0.7978 1.6033 15 6 5.9722 -3.9522 -0.5728 16 6 7.4851 -3.8876 -0.7916 17 6 7.9928 -5.2559 -1.2508 18 6 7.3039 -5.6420 -2.5613 19 6 5.7911 -5.7066 -2.3425 20 6 5.2832 -4.3376 -1.8834 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8888 23 1 3.8745 -0.6801 -0.8911 24 1 3.5814 -3.1775 -0.8387 25 1 3.7393 -3.1216 0.9333 26 1 7.0974 -2.6873 1.3261 27 1 4.1428 -2.0761 2.1814 28 1 5.5902 -2.2282 3.3140 29 1 6.7312 -0.3048 2.1158 30 1 5.2837 -0.1519 0.9829 31 1 5.7468 -4.6982 0.1893 32 1 7.7104 -3.1415 -1.5537 33 1 7.9758 -3.6130 0.1421 34 1 7.7673 -6.0016 -0.4884 35 1 9.0705 -5.2098 -1.4071 36 1 7.6653 -6.6170 -2.8882 37 1 7.5293 -4.8963 -3.3237 38 1 5.5656 -6.4523 -1.5801 39 1 5.3003 -5.9820 -3.2759 40 1 4.2054 -4.3836 -1.7275 41 1 5.5086 -3.5916 -2.6454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051880786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:04 Heat of formation + Delta-G solvation = 6.382481 kcal Electronic energy + Delta-G solvation = -17809.036103 eV Core-core repulsion = 15302.662094 eV Total energy + Delta-G solvation = -2506.374009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.82838 -38.47435 -35.27952 -34.42217 -32.53531 -31.57381 -29.30971 -26.55137 -23.95911 -23.45378 -22.88133 -21.85865 -20.97762 -20.42773 -18.88515 -17.86043 -16.77944 -16.24787 -15.78285 -15.28956 -15.07184 -14.89510 -14.80586 -14.37645 -13.97601 -13.51690 -13.31638 -13.18197 -13.00034 -12.62237 -12.60150 -12.32285 -12.01283 -11.95799 -11.83633 -11.57285 -11.42630 -11.37787 -11.16107 -11.14300 -10.99483 -10.77852 -10.55690 -8.97336 -8.30489 -6.32981 1.34230 1.34899 1.47656 2.34959 2.74413 3.05705 3.19153 3.74973 3.84925 4.02796 4.06437 4.14029 4.19367 4.34142 4.36594 4.42058 4.52440 4.57213 4.65339 4.66968 4.74924 4.79941 4.89494 4.98982 5.00347 5.11849 5.17973 5.24530 5.30354 5.31129 5.32803 5.36092 5.41234 5.47830 5.56756 5.60636 5.65566 6.18217 6.30533 6.39153 6.74098 7.30987 8.86468 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029670 B = 0.006760 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.485845 B = 4140.756028 C = 4668.442146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.009 3.991 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.529 4.529 8 H 0.029 0.971 9 C -0.012 4.012 10 C 0.070 3.930 11 N -0.516 5.516 12 C 0.025 3.975 13 C -0.226 4.226 14 C -0.189 4.189 15 C 0.088 3.912 16 C -0.106 4.106 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.113 4.113 20 C -0.118 4.118 21 H 0.266 0.734 22 H 0.045 0.955 23 H 0.010 0.990 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.140 0.860 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.064 -9.153 -0.776 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.567 4.567 8 H 0.047 0.953 9 C -0.049 4.049 10 C -0.057 4.057 11 N -0.238 5.238 12 C -0.084 4.084 13 C -0.264 4.264 14 C -0.226 4.226 15 C -0.019 4.019 16 C -0.143 4.143 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.156 4.156 21 H 0.075 0.925 22 H 0.063 0.937 23 H 0.028 0.972 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.157 0.843 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.102 0.898 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.047 -8.725 -1.160 20.983 hybrid contribution -1.041 0.363 0.562 1.238 sum 18.006 -8.362 -0.598 19.862 Atomic orbital electron populations 1.70062 1.08209 1.28065 1.52897 1.25908 0.95514 1.03232 0.94154 0.85720 0.79696 0.78514 0.79073 1.19581 1.20880 1.16783 1.21445 0.92108 0.92978 1.50208 0.95265 1.19868 0.93141 0.94550 0.97359 1.22072 0.86402 0.98000 0.99220 1.61977 1.05345 1.28405 1.28029 1.22803 0.98897 0.98911 0.87800 1.23602 0.99737 1.05143 0.97966 1.23450 1.03468 0.91986 1.03716 1.21658 0.96290 0.88179 0.95803 1.21604 0.92630 0.98328 1.01768 1.21512 1.00348 0.95843 0.97356 1.21543 0.94209 1.01975 0.97702 1.21511 0.96817 0.95492 1.01269 1.21707 0.98975 0.98120 0.96795 0.92537 0.93682 0.97192 0.91895 0.95489 0.84262 0.89862 0.87190 0.86717 0.89805 0.94856 0.91911 0.91236 0.91795 0.90301 0.90543 0.92114 0.91931 0.91413 0.93503 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.95 45.93 27.47 68.60 1.88 47.82 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.24 -11.03 6.44 99.48 0.64 -10.39 16 7 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 9 C -0.01 -0.58 2.87 29.85 0.09 -0.49 16 10 C 0.07 2.94 4.32 86.30 0.37 3.32 16 11 N -0.52 -17.59 4.54 -845.94 -3.84 -21.43 16 12 C 0.02 0.75 5.76 44.91 0.26 1.01 16 13 C -0.23 -7.27 9.02 30.61 0.28 -6.99 16 14 C -0.19 -6.01 9.55 30.62 0.29 -5.72 16 15 C 0.09 2.45 1.94 44.91 0.09 2.54 16 16 C -0.11 -2.28 5.10 30.59 0.16 -2.12 16 17 C -0.11 -1.89 5.92 30.59 0.18 -1.70 16 18 C -0.12 -2.00 5.92 30.59 0.18 -1.82 16 19 C -0.11 -2.37 5.93 30.61 0.18 -2.19 16 20 C -0.12 -3.30 4.93 30.61 0.15 -3.15 16 21 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 22 H 0.05 2.16 2.87 -2.39 -0.01 2.15 16 23 H 0.01 0.49 7.57 -2.39 -0.02 0.48 16 24 H 0.06 2.73 5.38 -2.38 -0.01 2.72 16 25 H 0.03 1.16 6.12 -2.39 -0.01 1.15 16 26 H 0.14 3.33 5.99 -2.39 -0.01 3.32 16 27 H 0.08 3.30 4.90 -2.38 -0.01 3.29 16 28 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.08 3.24 5.32 -2.39 -0.01 3.23 16 31 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.07 1.37 6.13 -2.39 -0.01 1.35 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.51 5.98 -2.39 -0.01 1.50 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -66.47 299.12 2.21 -64.27 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.93 Total: 17.73 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 2.93 Total: -47.61 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -3.54 Total: -82.21 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.82 kcal Total: -66.47 2.21 -64.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051880786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.649 kcal (2) G-P(sol) polarization free energy of solvation -66.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds