Wall clock time and date at job start Sun Mar 29 2020 22:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47345 * 2 1 4 4 C 1.53001 * 109.47010 * 295.00096 * 3 2 1 5 5 C 1.52996 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47249 * 60.00033 * 5 4 3 7 7 N 1.46503 * 109.47278 * 179.97438 * 6 5 4 8 8 C 1.36942 * 119.99654 * 59.99948 * 7 6 5 9 9 H 1.07994 * 119.99966 * 303.88653 * 8 7 6 10 10 C 1.38809 * 119.99526 * 123.88134 * 8 7 6 11 11 N 1.31631 * 119.99753 * 168.66358 * 10 8 7 12 12 Si 1.86797 * 120.00508 * 348.66593 * 10 8 7 13 13 H 1.48500 * 109.47194 * 94.50892 * 12 10 8 14 14 H 1.48500 * 109.47347 * 214.50759 * 12 10 8 15 15 H 1.48499 * 109.47086 * 334.51143 * 12 10 8 16 16 C 1.46494 * 120.00435 * 240.00101 * 7 6 5 17 17 C 1.52999 * 117.50289 * 183.10762 * 16 7 6 18 18 C 1.52998 * 117.50000 * 114.48321 * 16 7 6 19 19 C 1.53001 * 109.47130 * 299.99842 * 6 5 4 20 20 C 1.52997 * 109.46937 * 60.00356 * 19 6 5 21 21 H 1.08996 * 109.47598 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47145 * 59.99945 * 1 2 3 23 23 H 1.09001 * 109.47393 * 300.00505 * 1 2 3 24 24 H 1.09000 * 109.47049 * 120.00341 * 2 1 3 25 25 H 1.09006 * 109.47219 * 240.00217 * 2 1 3 26 26 H 1.08991 * 109.46665 * 55.00008 * 3 2 1 27 27 H 1.08998 * 109.47375 * 300.00183 * 4 3 2 28 28 H 1.08998 * 109.47400 * 59.99760 * 4 3 2 29 29 H 1.09001 * 109.47125 * 299.99519 * 5 4 3 30 30 H 1.09002 * 109.47349 * 180.02562 * 5 4 3 31 31 H 1.09007 * 109.47083 * 59.99913 * 6 5 4 32 32 H 0.96993 * 120.00059 * 180.02562 * 11 10 8 33 33 H 1.09008 * 115.54905 * 328.81882 * 16 7 6 34 34 H 1.09001 * 117.49359 * 359.97438 * 17 16 7 35 35 H 1.08997 * 117.49849 * 145.01913 * 17 16 7 36 36 H 1.09000 * 117.50064 * 214.97730 * 18 16 7 37 37 H 1.08999 * 117.49733 * 359.97438 * 18 16 7 38 38 H 1.08993 * 109.47006 * 300.00004 * 19 6 5 39 39 H 1.09001 * 109.46904 * 179.97438 * 19 6 5 40 40 H 1.09001 * 109.47332 * 180.02562 * 20 19 6 41 41 H 1.08998 * 109.47584 * 59.99521 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 -1.3074 5 6 2.1447 3.5692 -1.3071 6 6 3.6695 3.5716 -1.1811 7 7 4.1574 4.9530 -1.1814 8 6 3.7439 5.8254 -0.2102 9 1 2.6897 6.0051 -0.0592 10 6 4.6796 6.4785 0.5800 11 7 4.3060 7.4750 1.3548 12 14 6.4690 5.9436 0.5442 13 1 7.2162 6.7797 -0.4294 14 1 7.0621 6.1082 1.8956 15 1 6.5513 4.5177 0.1377 16 6 5.0877 5.4010 -2.2206 17 6 5.6175 6.8332 -2.1248 18 6 4.5926 6.4669 -3.2001 19 6 4.0743 2.8875 0.1263 20 6 3.5649 1.4449 0.1260 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6054 1.9815 0.8418 27 1 2.0698 1.5875 -2.1492 28 1 0.5489 2.1253 -1.3970 29 1 1.7097 4.1080 -0.4653 30 1 1.8560 4.0567 -2.2382 31 1 4.1045 3.0328 -2.0229 32 1 4.9599 7.9317 1.9067 33 1 5.7644 4.6385 -2.6063 34 1 5.2734 7.4421 -1.2888 35 1 6.6429 7.0131 -2.4474 36 1 4.9439 6.4059 -4.2302 37 1 3.5745 6.8344 -3.0717 38 1 3.6393 3.4263 0.9680 39 1 5.1606 2.8888 0.2158 40 1 3.8528 0.9576 1.0575 41 1 3.9998 0.9061 -0.7159 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052103657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:36 Heat of formation + Delta-G solvation = 19.607005 kcal Electronic energy + Delta-G solvation = -18090.783294 eV Core-core repulsion = 15584.982743 eV Total energy + Delta-G solvation = -2505.800551 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.70150 -36.90040 -33.96384 -32.19415 -30.74737 -30.11925 -27.37001 -24.48371 -22.94484 -21.86605 -21.51728 -20.35759 -19.49477 -19.11816 -16.61329 -15.58801 -14.81051 -14.49327 -14.25130 -13.75415 -13.49750 -13.24995 -12.96565 -12.92112 -12.64308 -12.06163 -11.62318 -11.49656 -11.45797 -11.07545 -10.87929 -10.71744 -10.65862 -10.46140 -10.31829 -10.24788 -9.95735 -9.80337 -9.58197 -9.36100 -9.19332 -9.04698 -8.37593 -6.35532 -5.93874 -3.65245 3.41580 3.51137 3.59033 4.56773 4.80372 4.92117 5.05035 5.05925 5.21951 5.36998 5.43577 5.64639 5.72733 5.86182 5.89601 5.90449 5.95165 6.08577 6.09443 6.11316 6.14206 6.15578 6.21815 6.26469 6.36837 6.44173 6.53713 6.55203 6.57617 6.67297 6.74255 6.92556 6.97367 7.05774 7.22628 7.29539 7.33470 8.16554 8.59657 9.10238 9.70746 10.22525 11.14767 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030496 B = 0.007810 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.920604 B = 3584.456834 C = 3875.934865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.109 4.109 5 C -0.123 4.123 6 C 0.185 3.815 7 N -0.573 5.573 8 C -0.272 4.272 9 H 0.070 0.930 10 C 0.053 3.947 11 N -0.904 5.904 12 Si 0.885 3.115 13 H -0.274 1.274 14 H -0.308 1.308 15 H -0.265 1.265 16 C 0.112 3.888 17 C -0.202 4.202 18 C -0.214 4.214 19 C -0.127 4.127 20 C -0.110 4.110 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 -11.739 -4.771 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.105 4.105 4 C -0.147 4.147 5 C -0.162 4.162 6 C 0.079 3.921 7 N -0.292 5.292 8 C -0.401 4.401 9 H 0.088 0.912 10 C -0.149 4.149 11 N -0.544 5.544 12 Si 0.714 3.286 13 H -0.200 1.200 14 H -0.237 1.237 15 H -0.189 1.189 16 C 0.004 3.996 17 C -0.240 4.240 18 C -0.255 4.255 19 C -0.166 4.166 20 C -0.148 4.148 21 H 0.066 0.934 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.436 -11.621 -4.621 12.741 hybrid contribution 1.062 0.012 0.089 1.065 sum -1.374 -11.609 -4.532 12.537 Atomic orbital electron populations 1.21818 0.96332 1.00847 1.02013 1.21580 0.95540 0.97176 1.01335 1.21190 0.95914 0.94787 0.98654 1.21599 0.99702 0.96748 0.96654 1.21888 0.97907 0.94578 1.01842 1.20352 0.92227 0.84864 0.94657 1.43679 1.52026 1.06542 1.26985 1.18477 0.92958 1.19600 1.09068 0.91235 1.25899 0.98653 0.95971 0.94364 1.69842 1.34821 1.21652 1.28053 0.86833 0.85894 0.80259 0.75571 1.20010 1.23652 1.18923 1.21299 0.95637 0.89446 0.93193 1.23507 0.96800 1.00952 1.02760 1.23358 0.99463 1.08946 0.93704 1.21962 1.00185 0.93635 1.00861 1.21582 0.94822 0.97881 1.00503 0.93450 0.92473 0.92861 0.92516 0.92435 0.91220 0.92901 0.92707 0.91398 0.92950 0.93571 0.92726 0.89731 0.86368 0.90840 0.91206 0.89307 0.90895 0.92884 0.92980 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.67 37.15 0.36 -1.27 16 2 C -0.12 -1.38 5.40 -26.73 -0.14 -1.53 16 3 C -0.09 -1.23 2.19 -90.61 -0.20 -1.43 16 4 C -0.11 -1.59 4.96 -26.73 -0.13 -1.72 16 5 C -0.12 -2.24 5.16 -26.73 -0.14 -2.38 16 6 C 0.18 3.67 2.65 -67.93 -0.18 3.49 16 7 N -0.57 -13.30 2.01 -158.14 -0.32 -13.62 16 8 C -0.27 -7.33 7.74 -15.06 -0.12 -7.45 16 9 H 0.07 2.08 7.43 -52.49 -0.39 1.69 16 10 C 0.05 1.48 3.91 -17.43 -0.07 1.42 16 11 N -0.90 -27.06 13.97 55.49 0.78 -26.28 16 12 Si 0.89 22.25 24.43 -169.99 -4.15 18.09 16 13 H -0.27 -6.65 5.79 56.52 0.33 -6.32 16 14 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 15 H -0.26 -6.52 6.14 56.52 0.35 -6.17 16 16 C 0.11 2.43 5.01 -67.94 -0.34 2.09 16 17 C -0.20 -4.51 6.54 -26.73 -0.17 -4.68 16 18 C -0.21 -4.33 10.36 -26.73 -0.28 -4.61 16 19 C -0.13 -2.46 5.17 -26.73 -0.14 -2.60 16 20 C -0.11 -1.67 5.21 -26.73 -0.14 -1.81 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.61 6.57 -51.92 -0.34 0.27 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.74 6.56 -51.93 -0.34 0.40 16 29 H 0.07 1.39 7.25 -51.93 -0.38 1.01 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 33 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 34 H 0.12 3.05 5.03 -51.93 -0.26 2.79 16 35 H 0.07 1.51 7.80 -51.93 -0.41 1.10 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 38 H 0.07 1.59 7.66 -51.93 -0.40 1.19 16 39 H 0.05 1.09 7.17 -51.93 -0.37 0.72 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -28.23 302.81 -8.45 -36.68 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.63 Total: 3.04 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -1.69 Total: -22.47 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.46 Total: -39.90 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.15 Total: 18.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.23 -8.45 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052103657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.287 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds