Wall clock time and date at job start Sun Mar 29 2020 22:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47345 * 2 1 4 4 C 1.53001 * 109.47010 * 295.00096 * 3 2 1 5 5 C 1.52996 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47249 * 60.00033 * 5 4 3 7 7 N 1.46503 * 109.47278 * 179.97438 * 6 5 4 8 8 C 1.36942 * 119.99654 * 59.99948 * 7 6 5 9 9 H 1.07994 * 119.99966 * 303.88653 * 8 7 6 10 10 C 1.38809 * 119.99526 * 123.88134 * 8 7 6 11 11 N 1.31631 * 119.99753 * 168.66358 * 10 8 7 12 12 Si 1.86797 * 120.00508 * 348.66593 * 10 8 7 13 13 H 1.48500 * 109.47194 * 94.50892 * 12 10 8 14 14 H 1.48500 * 109.47347 * 214.50759 * 12 10 8 15 15 H 1.48499 * 109.47086 * 334.51143 * 12 10 8 16 16 C 1.46494 * 120.00435 * 240.00101 * 7 6 5 17 17 C 1.52999 * 117.50289 * 183.10762 * 16 7 6 18 18 C 1.52998 * 117.50000 * 114.48321 * 16 7 6 19 19 C 1.53001 * 109.47130 * 299.99842 * 6 5 4 20 20 C 1.52997 * 109.46937 * 60.00356 * 19 6 5 21 21 H 1.08996 * 109.47598 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47145 * 59.99945 * 1 2 3 23 23 H 1.09001 * 109.47393 * 300.00505 * 1 2 3 24 24 H 1.09000 * 109.47049 * 120.00341 * 2 1 3 25 25 H 1.09006 * 109.47219 * 240.00217 * 2 1 3 26 26 H 1.08991 * 109.46665 * 55.00008 * 3 2 1 27 27 H 1.08998 * 109.47375 * 300.00183 * 4 3 2 28 28 H 1.08998 * 109.47400 * 59.99760 * 4 3 2 29 29 H 1.09001 * 109.47125 * 299.99519 * 5 4 3 30 30 H 1.09002 * 109.47349 * 180.02562 * 5 4 3 31 31 H 1.09007 * 109.47083 * 59.99913 * 6 5 4 32 32 H 0.96993 * 120.00059 * 180.02562 * 11 10 8 33 33 H 1.09008 * 115.54905 * 328.81882 * 16 7 6 34 34 H 1.09001 * 117.49359 * 359.97438 * 17 16 7 35 35 H 1.08997 * 117.49849 * 145.01913 * 17 16 7 36 36 H 1.09000 * 117.50064 * 214.97730 * 18 16 7 37 37 H 1.08999 * 117.49733 * 359.97438 * 18 16 7 38 38 H 1.08993 * 109.47006 * 300.00004 * 19 6 5 39 39 H 1.09001 * 109.46904 * 179.97438 * 19 6 5 40 40 H 1.09001 * 109.47332 * 180.02562 * 20 19 6 41 41 H 1.08998 * 109.47584 * 59.99521 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 -1.3074 5 6 2.1447 3.5692 -1.3071 6 6 3.6695 3.5716 -1.1811 7 7 4.1574 4.9530 -1.1814 8 6 3.7439 5.8254 -0.2102 9 1 2.6897 6.0051 -0.0592 10 6 4.6796 6.4785 0.5800 11 7 4.3060 7.4750 1.3548 12 14 6.4690 5.9436 0.5442 13 1 7.2162 6.7797 -0.4294 14 1 7.0621 6.1082 1.8956 15 1 6.5513 4.5177 0.1377 16 6 5.0877 5.4010 -2.2206 17 6 5.6175 6.8332 -2.1248 18 6 4.5926 6.4669 -3.2001 19 6 4.0743 2.8875 0.1263 20 6 3.5649 1.4449 0.1260 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6054 1.9815 0.8418 27 1 2.0698 1.5875 -2.1492 28 1 0.5489 2.1253 -1.3970 29 1 1.7097 4.1080 -0.4653 30 1 1.8560 4.0567 -2.2382 31 1 4.1045 3.0328 -2.0229 32 1 4.9599 7.9317 1.9067 33 1 5.7644 4.6385 -2.6063 34 1 5.2734 7.4421 -1.2888 35 1 6.6429 7.0131 -2.4474 36 1 4.9439 6.4059 -4.2302 37 1 3.5745 6.8344 -3.0717 38 1 3.6393 3.4263 0.9680 39 1 5.1606 2.8888 0.2158 40 1 3.8528 0.9576 1.0575 41 1 3.9998 0.9061 -0.7159 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052103657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:36 Heat of formation + Delta-G solvation = 4.800116 kcal Electronic energy + Delta-G solvation = -18091.425369 eV Core-core repulsion = 15584.982743 eV Total energy + Delta-G solvation = -2506.442625 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.16781 -38.49647 -35.37384 -34.18277 -32.29343 -31.51415 -28.81024 -26.35999 -24.20831 -23.32232 -23.12509 -21.84987 -21.13033 -20.50957 -18.58135 -17.22046 -16.59960 -15.90650 -15.56484 -15.37581 -15.06890 -14.79033 -14.43381 -14.34298 -14.04436 -13.53232 -13.24468 -13.07427 -12.83723 -12.59932 -12.35238 -12.25384 -12.10466 -11.96335 -11.91909 -11.75193 -11.40114 -11.31824 -11.15561 -10.98623 -10.81619 -10.66540 -10.42464 -8.33522 -8.05946 -5.82218 1.40171 1.43481 1.56736 2.47457 3.05325 3.15699 3.37499 3.88656 3.93876 4.09723 4.23246 4.31768 4.34341 4.40782 4.53434 4.56866 4.65801 4.69483 4.71912 4.79360 4.86256 4.90253 4.94811 4.96095 5.08724 5.14527 5.23465 5.25214 5.29590 5.38703 5.42667 5.48219 5.53059 5.54173 5.58359 5.71185 5.77904 6.03604 6.34487 7.17716 7.65242 8.16136 9.00149 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030496 B = 0.007810 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.920604 B = 3584.456834 C = 3875.934865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.086 4.086 4 C -0.100 4.100 5 C -0.115 4.115 6 C 0.178 3.822 7 N -0.585 5.585 8 C -0.251 4.251 9 H 0.022 0.978 10 C 0.006 3.994 11 N -0.954 5.954 12 Si 0.941 3.059 13 H -0.256 1.256 14 H -0.322 1.322 15 H -0.252 1.252 16 C 0.101 3.899 17 C -0.217 4.217 18 C -0.192 4.192 19 C -0.122 4.122 20 C -0.102 4.102 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.261 0.739 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -14.654 -7.038 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.104 4.104 4 C -0.138 4.138 5 C -0.155 4.155 6 C 0.073 3.927 7 N -0.305 5.305 8 C -0.381 4.381 9 H 0.040 0.960 10 C -0.191 4.191 11 N -0.597 5.597 12 Si 0.769 3.231 13 H -0.181 1.181 14 H -0.252 1.252 15 H -0.176 1.176 16 C -0.006 4.006 17 C -0.255 4.255 18 C -0.233 4.233 19 C -0.161 4.161 20 C -0.140 4.140 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.380 -14.561 -6.924 16.183 hybrid contribution 0.621 0.957 0.758 1.369 sum -0.759 -13.605 -6.166 14.956 Atomic orbital electron populations 1.21821 0.95697 1.01874 1.01662 1.21515 0.96057 0.94942 1.02402 1.21161 0.95191 0.96554 0.97544 1.21542 1.00516 0.93998 0.97696 1.21768 0.96937 0.96972 0.99776 1.20597 0.93040 0.83240 0.95812 1.43834 1.52411 1.07435 1.26852 1.18123 0.90851 1.19488 1.09642 0.96048 1.26454 1.02511 0.95917 0.94197 1.69974 1.36093 1.23611 1.30017 0.85936 0.81448 0.80628 0.75112 1.18111 1.25155 1.17558 1.21616 0.95831 0.90052 0.93138 1.23415 0.98529 1.00946 1.02651 1.23319 0.97784 1.06857 0.95294 1.21866 0.99113 0.96124 0.99018 1.21534 0.95455 0.94932 1.02069 0.91738 0.92468 0.93659 0.91850 0.90935 0.93464 0.90731 0.91516 0.95251 0.93559 0.90923 0.93008 0.86456 0.90426 0.88438 0.87087 0.91694 0.94818 0.94117 0.91965 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.67 71.98 0.70 -2.15 16 2 C -0.11 -2.23 5.40 30.59 0.17 -2.06 16 3 C -0.09 -2.26 2.19 -10.79 -0.02 -2.29 16 4 C -0.10 -2.69 4.96 30.59 0.15 -2.54 16 5 C -0.12 -4.19 5.16 30.59 0.16 -4.04 16 6 C 0.18 6.86 2.65 44.99 0.12 6.98 16 7 N -0.59 -27.06 2.01 -654.25 -1.32 -28.37 16 8 C -0.25 -14.13 7.74 84.03 0.65 -13.48 16 9 H 0.02 1.41 7.43 -2.91 -0.02 1.39 16 10 C 0.01 0.37 3.91 84.86 0.33 0.70 16 11 N -0.95 -60.14 13.97 21.65 0.30 -59.83 16 12 Si 0.94 46.48 24.43 68.60 1.68 48.16 16 13 H -0.26 -11.80 5.79 99.48 0.58 -11.23 16 14 H -0.32 -16.54 7.11 99.48 0.71 -15.83 16 15 H -0.25 -11.77 6.14 99.48 0.61 -11.16 16 16 C 0.10 4.13 5.01 44.99 0.23 4.35 16 17 C -0.22 -9.32 6.54 30.59 0.20 -9.12 16 18 C -0.19 -7.34 10.36 30.59 0.32 -7.02 16 19 C -0.12 -4.64 5.17 30.59 0.16 -4.49 16 20 C -0.10 -2.86 5.21 30.59 0.16 -2.70 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 1.05 6.57 -2.38 -0.02 1.04 16 23 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.66 6.56 -2.39 -0.02 1.65 16 29 H 0.03 1.26 7.25 -2.39 -0.02 1.25 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.45 7.93 -2.38 -0.02 2.44 16 32 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.12 4.11 8.14 -2.38 -0.02 4.09 16 34 H 0.08 4.04 5.03 -2.39 -0.01 4.03 16 35 H 0.10 3.68 7.80 -2.39 -0.02 3.66 16 36 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.03 1.51 7.66 -2.39 -0.02 1.50 16 39 H 0.04 1.62 7.17 -2.39 -0.02 1.60 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -64.60 302.81 4.71 -59.89 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.73 Total: 18.00 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 3.31 Total: -37.85 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -1.01 Total: -88.21 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.68 Total: 48.16 kcal Total: -64.60 4.71 -59.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052103657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.691 kcal (2) G-P(sol) polarization free energy of solvation -64.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds