Wall clock time and date at job start Sun Mar 29 2020 21:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00094 * 2 1 4 4 H 1.48497 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47095 * 299.99791 * 3 2 1 6 6 H 1.48501 * 109.46828 * 60.00018 * 3 2 1 7 7 C 1.38813 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00271 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.47416 * 125.64923 * 335.69219 * 9 7 2 11 11 C 1.54907 * 104.83213 * 204.16404 * 10 9 7 12 12 C 1.55396 * 101.66718 * 323.07773 * 11 10 9 13 13 C 1.47025 * 125.64611 * 155.73584 * 9 7 2 14 14 H 1.08996 * 109.87988 * 59.33214 * 13 9 7 15 15 C 1.53003 * 109.88159 * 298.32256 * 13 9 7 16 16 C 1.53000 * 109.47234 * 66.77963 * 15 13 9 17 17 C 1.52995 * 109.46925 * 183.54682 * 16 15 13 18 18 C 1.53001 * 109.47249 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47106 * 59.99951 * 18 17 16 20 20 C 1.53008 * 109.47256 * 300.00174 * 19 18 17 21 21 C 1.53000 * 109.46881 * 60.00077 * 20 19 18 22 22 H 0.96999 * 120.00036 * 0.02562 * 1 2 3 23 23 H 1.08996 * 110.36889 * 323.00257 * 10 9 7 24 24 H 1.09002 * 110.36856 * 85.32996 * 10 9 7 25 25 H 1.09005 * 111.00441 * 81.06841 * 11 10 9 26 26 H 1.08997 * 111.00694 * 204.87544 * 11 10 9 27 27 H 1.09006 * 110.69636 * 277.04289 * 12 11 10 28 28 H 1.09006 * 110.85554 * 153.69740 * 12 11 10 29 29 H 1.08995 * 109.46848 * 306.78032 * 15 13 9 30 30 H 1.09003 * 109.46766 * 186.78008 * 15 13 9 31 31 H 1.08998 * 109.47445 * 303.54701 * 16 15 13 32 32 H 1.08996 * 109.47340 * 60.00169 * 17 16 15 33 33 H 1.09005 * 109.47417 * 300.00186 * 17 16 15 34 34 H 1.08998 * 109.47523 * 180.02562 * 18 17 16 35 35 H 1.09005 * 109.46908 * 300.00308 * 18 17 16 36 36 H 1.08994 * 109.47416 * 60.00407 * 19 18 17 37 37 H 1.09000 * 109.47437 * 180.02562 * 19 18 17 38 38 H 1.08996 * 109.47002 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.46969 * 299.99922 * 20 19 18 40 40 H 1.08998 * 109.47445 * 60.00137 * 21 20 19 41 41 H 1.08993 * 109.47181 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0498 -2.5861 0.4932 11 6 -0.1280 -4.0899 0.8570 12 6 0.7371 -4.7298 -0.2642 13 6 1.8405 -3.6749 -0.4900 14 1 2.7368 -3.9512 0.0652 15 6 2.1640 -3.5712 -1.9818 16 6 3.3383 -2.6114 -2.1836 17 6 3.6048 -2.4392 -3.6803 18 6 4.7794 -1.4799 -3.8821 19 6 6.0266 -2.0510 -3.2045 20 6 5.7601 -2.2233 -1.7076 21 6 4.5854 -3.1826 -1.5059 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2286 -1.9725 1.3760 24 1 -0.7709 -2.3470 -0.2885 25 1 0.3072 -4.2775 1.8386 26 1 -1.1559 -4.4497 0.8125 27 1 0.1487 -4.8726 -1.1706 28 1 1.1685 -5.6736 0.0695 29 1 1.2920 -3.1961 -2.5174 30 1 2.4299 -4.5564 -2.3651 31 1 3.0964 -1.6438 -1.7440 32 1 2.7162 -2.0327 -4.1632 33 1 3.8467 -3.4069 -4.1200 34 1 4.9690 -1.3569 -4.9484 35 1 4.5379 -0.5122 -3.4423 36 1 6.2681 -3.0187 -3.6442 37 1 6.8634 -1.3674 -3.3478 38 1 6.6484 -2.6306 -1.2250 39 1 5.5186 -1.2556 -1.2679 40 1 4.8269 -4.1503 -1.9456 41 1 4.3953 -3.3050 -0.4396 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057871693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:05 Heat of formation + Delta-G solvation = -14.042109 kcal Electronic energy + Delta-G solvation = -18358.422408 eV Core-core repulsion = 15851.162722 eV Total energy + Delta-G solvation = -2507.259686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.66385 -36.92242 -32.55832 -32.19190 -30.28616 -29.12524 -28.04067 -24.81463 -23.90443 -22.15365 -20.82247 -20.06827 -19.15007 -18.78074 -16.65744 -15.24792 -14.94254 -14.35728 -13.87761 -13.77896 -13.64021 -13.36574 -12.40045 -12.14456 -12.02398 -11.95265 -11.71337 -11.63345 -11.28324 -10.91180 -10.77548 -10.68761 -10.56720 -10.40584 -10.24681 -9.98639 -9.96013 -9.83697 -9.69562 -9.30195 -9.27968 -9.14290 -8.39500 -6.55932 -5.72012 -3.07724 3.39437 3.46621 3.47901 4.52645 5.15091 5.20666 5.24000 5.42936 5.53285 5.66630 5.72932 5.78584 5.83180 5.91390 6.00228 6.01378 6.03332 6.08487 6.13682 6.31767 6.37230 6.42087 6.46024 6.53551 6.56114 6.59448 6.66865 6.71702 6.75228 6.81926 6.85518 7.03475 7.07121 7.35654 7.50720 7.55667 7.76506 7.84531 8.39136 9.25903 9.87823 10.63792 11.41562 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.011988 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.542878 B = 2335.049497 C = 3497.063019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.000 4.000 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.157 3.843 14 H 0.033 0.967 15 C -0.111 4.111 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.108 4.108 22 H 0.251 0.749 23 H 0.050 0.950 24 H 0.031 0.969 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.499 -6.719 -4.152 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.198 4.198 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.093 0.907 9 N -0.317 5.317 10 C 0.049 3.951 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.050 3.950 14 H 0.051 0.949 15 C -0.151 4.151 16 C -0.120 4.120 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.145 4.145 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.444 -6.493 -4.142 10.042 hybrid contribution 0.380 0.927 -0.134 1.011 sum 6.824 -5.565 -4.276 9.789 Atomic orbital electron populations 1.69933 1.05063 1.24978 1.55585 1.25060 0.95513 0.97663 1.01520 0.86294 0.79307 0.84549 0.77296 1.20186 1.21671 1.21827 1.18888 0.90164 0.82108 1.43725 0.90674 1.44425 1.13062 1.03863 1.70341 1.21295 0.87216 0.88992 0.97584 1.23011 0.98061 1.00014 0.97609 1.22606 0.97881 0.97308 0.98643 1.21038 0.94390 0.87278 0.92282 0.94940 1.21972 0.97801 0.96803 0.98514 1.21522 0.93516 1.03241 0.93743 1.21561 0.97238 0.98138 0.97811 1.21522 0.95394 0.99627 0.99107 1.21495 0.97299 1.00171 0.96240 1.21534 0.98013 1.00551 0.95622 1.21548 0.94748 0.97293 1.00916 0.93840 0.93150 0.95098 0.92642 0.92692 0.92188 0.92752 0.92644 0.94565 0.86619 0.92618 0.93447 0.93081 0.91939 0.92699 0.92981 0.93064 0.91842 0.93583 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.50 11.02 55.49 0.61 -25.89 16 2 C 0.00 0.01 5.46 -17.43 -0.10 -0.09 16 3 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.22 -5.85 7.59 -15.06 -0.11 -5.97 16 8 H 0.08 1.96 6.81 -52.49 -0.36 1.61 16 9 N -0.59 -14.66 3.11 -162.58 -0.51 -15.17 16 10 C 0.17 4.23 5.35 -2.53 -0.01 4.21 16 11 C -0.15 -2.85 7.09 -24.45 -0.17 -3.03 16 12 C -0.13 -2.29 6.50 -24.77 -0.16 -2.45 16 13 C 0.16 3.24 3.08 -66.95 -0.21 3.03 16 14 H 0.03 0.68 6.29 -51.93 -0.33 0.36 16 15 C -0.11 -2.14 4.22 -26.73 -0.11 -2.25 16 16 C -0.10 -1.91 1.82 -90.62 -0.16 -2.08 16 17 C -0.11 -1.81 5.20 -26.73 -0.14 -1.95 16 18 C -0.12 -1.79 5.92 -26.73 -0.16 -1.95 16 19 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 20 C -0.12 -1.84 5.92 -26.73 -0.16 -2.00 16 21 C -0.11 -1.80 4.94 -26.73 -0.13 -1.94 16 22 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.05 1.34 7.61 -51.93 -0.40 0.95 16 24 H 0.03 0.82 7.83 -51.93 -0.41 0.42 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.05 7.85 -51.93 -0.41 0.65 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.12 2.61 4.56 -51.93 -0.24 2.37 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.16 6.40 -51.93 -0.33 0.83 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -27.98 303.67 -9.64 -37.63 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.52 Total: 0.31 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -1.79 Total: -18.20 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.11 Total: -41.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.98 -9.64 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057871693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.584 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds