Wall clock time and date at job start Sun Mar 29 2020 21:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00094 * 2 1 4 4 H 1.48497 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47095 * 299.99791 * 3 2 1 6 6 H 1.48501 * 109.46828 * 60.00018 * 3 2 1 7 7 C 1.38813 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00271 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.47416 * 125.64923 * 335.69219 * 9 7 2 11 11 C 1.54907 * 104.83213 * 204.16404 * 10 9 7 12 12 C 1.55396 * 101.66718 * 323.07773 * 11 10 9 13 13 C 1.47025 * 125.64611 * 155.73584 * 9 7 2 14 14 H 1.08996 * 109.87988 * 59.33214 * 13 9 7 15 15 C 1.53003 * 109.88159 * 298.32256 * 13 9 7 16 16 C 1.53000 * 109.47234 * 66.77963 * 15 13 9 17 17 C 1.52995 * 109.46925 * 183.54682 * 16 15 13 18 18 C 1.53001 * 109.47249 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47106 * 59.99951 * 18 17 16 20 20 C 1.53008 * 109.47256 * 300.00174 * 19 18 17 21 21 C 1.53000 * 109.46881 * 60.00077 * 20 19 18 22 22 H 0.96999 * 120.00036 * 0.02562 * 1 2 3 23 23 H 1.08996 * 110.36889 * 323.00257 * 10 9 7 24 24 H 1.09002 * 110.36856 * 85.32996 * 10 9 7 25 25 H 1.09005 * 111.00441 * 81.06841 * 11 10 9 26 26 H 1.08997 * 111.00694 * 204.87544 * 11 10 9 27 27 H 1.09006 * 110.69636 * 277.04289 * 12 11 10 28 28 H 1.09006 * 110.85554 * 153.69740 * 12 11 10 29 29 H 1.08995 * 109.46848 * 306.78032 * 15 13 9 30 30 H 1.09003 * 109.46766 * 186.78008 * 15 13 9 31 31 H 1.08998 * 109.47445 * 303.54701 * 16 15 13 32 32 H 1.08996 * 109.47340 * 60.00169 * 17 16 15 33 33 H 1.09005 * 109.47417 * 300.00186 * 17 16 15 34 34 H 1.08998 * 109.47523 * 180.02562 * 18 17 16 35 35 H 1.09005 * 109.46908 * 300.00308 * 18 17 16 36 36 H 1.08994 * 109.47416 * 60.00407 * 19 18 17 37 37 H 1.09000 * 109.47437 * 180.02562 * 19 18 17 38 38 H 1.08996 * 109.47002 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.46969 * 299.99922 * 20 19 18 40 40 H 1.08998 * 109.47445 * 60.00137 * 21 20 19 41 41 H 1.08993 * 109.47181 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0498 -2.5861 0.4932 11 6 -0.1280 -4.0899 0.8570 12 6 0.7371 -4.7298 -0.2642 13 6 1.8405 -3.6749 -0.4900 14 1 2.7368 -3.9512 0.0652 15 6 2.1640 -3.5712 -1.9818 16 6 3.3383 -2.6114 -2.1836 17 6 3.6048 -2.4392 -3.6803 18 6 4.7794 -1.4799 -3.8821 19 6 6.0266 -2.0510 -3.2045 20 6 5.7601 -2.2233 -1.7076 21 6 4.5854 -3.1826 -1.5059 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2286 -1.9725 1.3760 24 1 -0.7709 -2.3470 -0.2885 25 1 0.3072 -4.2775 1.8386 26 1 -1.1559 -4.4497 0.8125 27 1 0.1487 -4.8726 -1.1706 28 1 1.1685 -5.6736 0.0695 29 1 1.2920 -3.1961 -2.5174 30 1 2.4299 -4.5564 -2.3651 31 1 3.0964 -1.6438 -1.7440 32 1 2.7162 -2.0327 -4.1632 33 1 3.8467 -3.4069 -4.1200 34 1 4.9690 -1.3569 -4.9484 35 1 4.5379 -0.5122 -3.4423 36 1 6.2681 -3.0187 -3.6442 37 1 6.8634 -1.3674 -3.3478 38 1 6.6484 -2.6306 -1.2250 39 1 5.5186 -1.2556 -1.2679 40 1 4.8269 -4.1503 -1.9456 41 1 4.3953 -3.3050 -0.4396 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057871693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:05 Heat of formation + Delta-G solvation = -27.789711 kcal Electronic energy + Delta-G solvation = -18359.018549 eV Core-core repulsion = 15851.162722 eV Total energy + Delta-G solvation = -2507.855826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16987 -38.46993 -34.53655 -33.65506 -31.56395 -31.03336 -29.58964 -26.66035 -25.56792 -23.44828 -22.40104 -21.60848 -20.69567 -20.30987 -18.63947 -17.01094 -16.32552 -16.17778 -15.68901 -15.10280 -14.95442 -14.75245 -14.05034 -13.77907 -13.72264 -13.52402 -13.26221 -12.99060 -12.92271 -12.73481 -12.65283 -12.13753 -12.00816 -11.92192 -11.88965 -11.63938 -11.54126 -11.44473 -11.27000 -11.02463 -10.68978 -10.55769 -10.42659 -8.58995 -7.83224 -5.19061 1.41401 1.43209 1.51941 2.50658 3.35861 3.75875 3.91453 3.96288 4.01458 4.13352 4.23708 4.35378 4.45212 4.47489 4.63098 4.70561 4.73266 4.76622 4.84258 4.89545 4.93172 4.97090 5.03108 5.11476 5.19231 5.22927 5.26135 5.29323 5.32896 5.47228 5.50343 5.51454 5.57863 5.67161 5.68507 5.79992 5.82210 5.99152 6.35918 7.17491 7.86316 8.59103 9.30302 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.011988 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.542878 B = 2335.049497 C = 3497.063019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.206 4.206 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.117 4.117 13 C 0.148 3.852 14 H 0.038 0.962 15 C -0.104 4.104 16 C -0.103 4.103 17 C -0.106 4.106 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.101 4.101 22 H 0.243 0.757 23 H 0.014 0.986 24 H -0.003 1.003 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 -8.960 -4.981 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.336 4.336 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.155 4.155 13 C 0.042 3.958 14 H 0.055 0.945 15 C -0.144 4.144 16 C -0.121 4.121 17 C -0.144 4.144 18 C -0.157 4.157 19 C -0.146 4.146 20 C -0.158 4.158 21 C -0.138 4.138 22 H 0.053 0.947 23 H 0.032 0.968 24 H 0.015 0.985 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.555 -8.760 -4.972 13.216 hybrid contribution -0.246 1.565 0.124 1.589 sum 8.310 -7.195 -4.848 12.014 Atomic orbital electron populations 1.70114 1.06347 1.24870 1.58132 1.25706 0.96207 1.00566 1.02852 0.85396 0.78912 0.81087 0.76548 1.18770 1.22259 1.22262 1.19124 0.90356 0.83049 1.41061 0.90536 1.44719 1.13095 1.04842 1.70829 1.21104 0.86527 0.92244 0.94988 1.22883 1.00083 0.95787 0.98526 1.22620 0.96725 0.97738 0.98441 1.21282 0.95406 0.86002 0.93068 0.94479 1.21867 0.96963 0.98396 0.97126 1.21388 0.94441 1.00879 0.95378 1.21511 0.97320 0.99582 0.95977 1.21533 0.95521 0.98148 1.00519 1.21474 0.96935 1.01505 0.94720 1.21538 0.98198 0.98973 0.97072 1.21465 0.94193 0.98559 0.99593 0.94720 0.96777 0.98459 0.91716 0.90293 0.91570 0.89114 0.95450 0.91385 0.91099 0.94272 0.91203 0.90916 0.94290 0.90743 0.91405 0.90989 0.94396 0.91297 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.94 11.02 21.65 0.24 -57.71 16 2 C -0.06 -3.42 5.46 84.86 0.46 -2.96 16 3 Si 0.95 46.46 29.55 68.60 2.03 48.49 16 4 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.21 -11.29 7.59 84.03 0.64 -10.65 16 8 H 0.08 4.10 6.81 -2.91 -0.02 4.08 16 9 N -0.61 -30.79 3.11 -668.28 -2.08 -32.86 16 10 C 0.18 8.83 5.35 86.86 0.46 9.30 16 11 C -0.13 -4.96 7.09 32.07 0.23 -4.73 16 12 C -0.12 -3.92 6.50 31.87 0.21 -3.71 16 13 C 0.15 5.92 3.08 45.34 0.14 6.06 16 14 H 0.04 1.48 6.29 -2.39 -0.02 1.47 16 15 C -0.10 -3.87 4.22 30.60 0.13 -3.74 16 16 C -0.10 -3.75 1.82 -10.79 -0.02 -3.77 16 17 C -0.11 -3.33 5.20 30.59 0.16 -3.17 16 18 C -0.12 -3.38 5.92 30.59 0.18 -3.19 16 19 C -0.11 -2.67 5.92 30.60 0.18 -2.49 16 20 C -0.12 -3.43 5.92 30.60 0.18 -3.24 16 21 C -0.10 -3.15 4.94 30.60 0.15 -3.00 16 22 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 23 H 0.01 0.78 7.61 -2.39 -0.02 0.76 16 24 H 0.00 -0.15 7.83 -2.39 -0.02 -0.17 16 25 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.07 2.14 7.85 -2.38 -0.02 2.12 16 28 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 3.26 4.56 -2.39 -0.01 3.25 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.05 1.59 6.40 -2.39 -0.02 1.57 16 Total: -1.00 -63.38 303.67 4.25 -59.13 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.96 Total: 12.25 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 3.10 Total: -29.29 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -1.84 Total: -90.57 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -63.38 4.25 -59.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057871693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.337 kcal (2) G-P(sol) polarization free energy of solvation -63.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds