Wall clock time and date at job start Sun Mar 29 2020 21:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99759 * 2 1 4 4 H 1.48504 * 109.47317 * 267.17521 * 3 2 1 5 5 H 1.48503 * 109.47340 * 27.17422 * 3 2 1 6 6 H 1.48503 * 109.47517 * 147.17444 * 3 2 1 7 7 C 1.38810 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99922 * 351.75453 * 7 2 1 9 9 N 1.36936 * 119.99997 * 171.75662 * 7 2 1 10 10 C 1.47523 * 125.63634 * 307.22315 * 9 7 2 11 11 C 1.54916 * 104.78383 * 155.84512 * 10 9 7 12 12 C 1.55156 * 101.61485 * 36.99936 * 11 10 9 13 13 C 1.47022 * 125.64840 * 127.17573 * 9 7 2 14 14 H 1.09003 * 109.88150 * 300.51684 * 13 9 7 15 15 C 1.53004 * 109.88060 * 61.67769 * 13 9 7 16 16 C 1.53004 * 109.47143 * 286.85363 * 15 13 9 17 17 C 1.53004 * 109.47290 * 294.70598 * 16 15 13 18 18 C 1.52994 * 109.47352 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.46892 * 59.99664 * 18 17 16 20 20 C 1.52998 * 109.47198 * 299.99686 * 19 18 17 21 21 C 1.52998 * 109.47145 * 174.70433 * 16 15 13 22 22 H 0.97000 * 120.00378 * 359.97438 * 1 2 3 23 23 H 1.08998 * 110.41753 * 37.00922 * 10 9 7 24 24 H 1.09007 * 110.36963 * 274.64936 * 10 9 7 25 25 H 1.08996 * 111.00196 * 278.90855 * 11 10 9 26 26 H 1.08996 * 111.00461 * 155.09147 * 11 10 9 27 27 H 1.09003 * 110.72232 * 82.84712 * 12 11 10 28 28 H 1.09002 * 110.72000 * 205.93693 * 12 11 10 29 29 H 1.09000 * 109.47336 * 46.85460 * 15 13 9 30 30 H 1.09001 * 109.47169 * 166.85730 * 15 13 9 31 31 H 1.09006 * 109.47122 * 54.70063 * 16 15 13 32 32 H 1.09006 * 109.46601 * 299.99784 * 17 16 15 33 33 H 1.08997 * 109.47562 * 59.99441 * 17 16 15 34 34 H 1.08995 * 109.47204 * 300.00025 * 18 17 16 35 35 H 1.08996 * 109.47366 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.46821 * 180.02562 * 19 18 17 37 37 H 1.08992 * 109.47240 * 60.00567 * 19 18 17 38 38 H 1.08992 * 109.47745 * 300.00572 * 20 19 18 39 39 H 1.09001 * 109.47002 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.46529 * 299.99747 * 21 16 15 41 41 H 1.08996 * 109.47353 * 59.99640 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5574 2.0120 -1.3984 5 1 1.4189 2.6692 0.6394 6 1 3.5165 1.4583 0.7590 7 6 2.0103 -1.2021 -0.0005 8 1 1.4787 -2.1326 0.1332 9 7 3.3690 -1.2081 -0.1706 10 6 4.1001 -0.5564 -1.2739 11 6 5.5229 -0.3087 -0.7134 12 6 5.7462 -1.5814 0.1456 13 6 4.3407 -1.8641 0.7166 14 1 4.2599 -1.4534 1.7231 15 6 4.0841 -3.3722 0.7447 16 6 2.8182 -3.6592 1.5547 17 6 3.0475 -3.2667 3.0157 18 6 1.7815 -3.5531 3.8255 19 6 1.4504 -5.0446 3.7439 20 6 1.2209 -5.4370 2.2830 21 6 2.4877 -5.1508 1.4731 22 1 -0.4851 0.8400 0.0004 23 1 3.6264 0.3891 -1.5377 24 1 4.1436 -1.2150 -2.1414 25 1 5.5486 0.5889 -0.0957 26 1 6.2548 -0.2475 -1.5187 27 1 6.0843 -2.4112 -0.4751 28 1 6.4588 -1.3857 0.9468 29 1 3.9544 -3.7378 -0.2739 30 1 4.9330 -3.8766 1.2064 31 1 1.9883 -3.0804 1.1491 32 1 3.8774 -3.8455 3.4213 33 1 3.2830 -2.2041 3.0738 34 1 0.9519 -2.9741 3.4197 35 1 1.9450 -3.2739 4.8663 36 1 0.5481 -5.2486 4.3205 37 1 2.2799 -5.6237 4.1497 38 1 0.3914 -4.8580 1.8772 39 1 0.9846 -6.4995 2.2250 40 1 2.3243 -5.4302 0.4323 41 1 3.3176 -5.7295 1.8787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057871697.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:07 Heat of formation + Delta-G solvation = -11.222085 kcal Electronic energy + Delta-G solvation = -18284.668108 eV Core-core repulsion = 15777.530708 eV Total energy + Delta-G solvation = -2507.137400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.73052 -37.13242 -32.55443 -32.35280 -30.24675 -29.84383 -28.30002 -24.81301 -23.84874 -22.13340 -20.93875 -20.32684 -19.24557 -18.85951 -16.78779 -15.87732 -14.93714 -14.50560 -14.00087 -13.72812 -13.45455 -13.23746 -12.78498 -12.49626 -12.38557 -11.97856 -11.82866 -11.63296 -11.40357 -11.13673 -11.04863 -10.66055 -10.59836 -10.55259 -10.33350 -10.21790 -10.02206 -9.94642 -9.73626 -9.34994 -9.22740 -9.13146 -8.44306 -6.38332 -5.91357 -3.59387 3.34963 3.46453 3.54659 4.55268 5.10548 5.20216 5.23125 5.25691 5.27979 5.52317 5.57845 5.66422 5.78315 5.78721 5.97905 5.98758 6.04306 6.04891 6.12230 6.19468 6.22503 6.30471 6.37799 6.42241 6.44683 6.54341 6.59936 6.60331 6.64146 6.75380 6.79637 6.83440 6.95536 6.96337 7.05001 7.27725 7.40502 8.15595 8.55382 8.94264 9.69434 10.41106 11.17804 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022534 B = 0.009830 C = 0.007829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.273751 B = 2847.872293 C = 3575.470853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.043 3.957 3 Si 0.892 3.108 4 H -0.285 1.285 5 H -0.304 1.304 6 H -0.266 1.266 7 C -0.249 4.249 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.115 3.885 11 C -0.139 4.139 12 C -0.127 4.127 13 C 0.153 3.847 14 H 0.043 0.957 15 C -0.110 4.110 16 C -0.105 4.105 17 C -0.105 4.105 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.110 4.110 22 H 0.263 0.737 23 H 0.041 0.959 24 H 0.026 0.974 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.784 -6.727 4.009 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.159 4.159 3 Si 0.722 3.278 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.103 0.897 9 N -0.329 5.329 10 C -0.009 4.009 11 C -0.177 4.177 12 C -0.165 4.165 13 C 0.047 3.953 14 H 0.061 0.939 15 C -0.150 4.150 16 C -0.123 4.123 17 C -0.143 4.143 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.147 4.147 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.527 -6.626 4.029 10.807 hybrid contribution 0.416 0.974 -0.061 1.061 sum 7.943 -5.652 3.969 10.526 Atomic orbital electron populations 1.69771 1.06015 1.26845 1.51948 1.25870 0.95109 0.98441 0.96433 0.86644 0.79988 0.83584 0.77564 1.21281 1.23168 1.19124 1.18546 0.79208 0.92855 1.47104 0.89697 1.44583 1.02163 1.63237 1.22911 1.21918 0.90515 0.96358 0.92109 1.22781 0.97949 0.97909 0.99058 1.22594 0.97521 0.97476 0.98924 1.21184 0.87845 0.91890 0.94378 0.93935 1.21955 0.96263 0.97456 0.99293 1.21584 1.00805 0.95065 0.94801 1.21511 0.96214 1.01083 0.95464 1.21524 0.99293 0.95785 0.99119 1.21493 1.00257 0.96829 0.96598 1.21526 0.98803 0.99848 0.95454 1.21567 0.96616 0.97439 0.99093 0.92670 0.94101 0.95629 0.91995 0.92099 0.91937 0.92263 0.92662 0.94097 0.86649 0.93747 0.91703 0.91366 0.93137 0.92931 0.92864 0.91669 0.93146 0.92740 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.27 13.97 55.49 0.78 -26.50 16 2 C 0.04 1.23 5.50 -17.43 -0.10 1.14 16 3 Si 0.89 22.67 25.33 -169.99 -4.30 18.37 16 4 H -0.29 -7.14 6.70 56.52 0.38 -6.76 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.27 -6.64 6.99 56.52 0.40 -6.25 16 7 C -0.25 -6.78 9.21 -15.06 -0.14 -6.92 16 8 H 0.09 2.46 5.51 -52.49 -0.29 2.18 16 9 N -0.60 -14.24 2.38 -162.49 -0.39 -14.62 16 10 C 0.12 2.50 6.24 -2.47 -0.02 2.49 16 11 C -0.14 -2.49 7.08 -24.58 -0.17 -2.66 16 12 C -0.13 -2.15 6.46 -24.90 -0.16 -2.31 16 13 C 0.15 3.05 3.13 -66.95 -0.21 2.84 16 14 H 0.04 0.90 6.16 -51.93 -0.32 0.59 16 15 C -0.11 -2.00 4.14 -26.73 -0.11 -2.11 16 16 C -0.10 -1.92 2.06 -90.62 -0.19 -2.10 16 17 C -0.11 -1.79 4.99 -26.73 -0.13 -1.92 16 18 C -0.12 -1.91 5.92 -26.73 -0.16 -2.07 16 19 C -0.11 -1.62 5.92 -26.73 -0.16 -1.77 16 20 C -0.12 -1.78 5.93 -26.70 -0.16 -1.94 16 21 C -0.11 -1.75 5.21 -26.70 -0.14 -1.89 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.04 0.96 4.44 -51.93 -0.23 0.73 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.15 8.03 -51.93 -0.42 0.73 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.97 7.85 -51.93 -0.41 0.57 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16 31 H 0.12 2.60 4.18 -51.93 -0.22 2.38 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.21 6.36 -51.93 -0.33 0.88 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -28.59 299.07 -8.54 -37.13 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.29 Total: 0.33 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -1.84 Total: -19.22 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.39 Total: -41.12 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.30 Total: 18.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.59 -8.54 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057871697.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.908 kcal (2) G-P(sol) polarization free energy of solvation -28.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds