Wall clock time and date at job start Sun Mar 29 2020 21:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99759 * 2 1 4 4 H 1.48504 * 109.47317 * 267.17521 * 3 2 1 5 5 H 1.48503 * 109.47340 * 27.17422 * 3 2 1 6 6 H 1.48503 * 109.47517 * 147.17444 * 3 2 1 7 7 C 1.38810 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99922 * 351.75453 * 7 2 1 9 9 N 1.36936 * 119.99997 * 171.75662 * 7 2 1 10 10 C 1.47523 * 125.63634 * 307.22315 * 9 7 2 11 11 C 1.54916 * 104.78383 * 155.84512 * 10 9 7 12 12 C 1.55156 * 101.61485 * 36.99936 * 11 10 9 13 13 C 1.47022 * 125.64840 * 127.17573 * 9 7 2 14 14 H 1.09003 * 109.88150 * 300.51684 * 13 9 7 15 15 C 1.53004 * 109.88060 * 61.67769 * 13 9 7 16 16 C 1.53004 * 109.47143 * 286.85363 * 15 13 9 17 17 C 1.53004 * 109.47290 * 294.70598 * 16 15 13 18 18 C 1.52994 * 109.47352 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.46892 * 59.99664 * 18 17 16 20 20 C 1.52998 * 109.47198 * 299.99686 * 19 18 17 21 21 C 1.52998 * 109.47145 * 174.70433 * 16 15 13 22 22 H 0.97000 * 120.00378 * 359.97438 * 1 2 3 23 23 H 1.08998 * 110.41753 * 37.00922 * 10 9 7 24 24 H 1.09007 * 110.36963 * 274.64936 * 10 9 7 25 25 H 1.08996 * 111.00196 * 278.90855 * 11 10 9 26 26 H 1.08996 * 111.00461 * 155.09147 * 11 10 9 27 27 H 1.09003 * 110.72232 * 82.84712 * 12 11 10 28 28 H 1.09002 * 110.72000 * 205.93693 * 12 11 10 29 29 H 1.09000 * 109.47336 * 46.85460 * 15 13 9 30 30 H 1.09001 * 109.47169 * 166.85730 * 15 13 9 31 31 H 1.09006 * 109.47122 * 54.70063 * 16 15 13 32 32 H 1.09006 * 109.46601 * 299.99784 * 17 16 15 33 33 H 1.08997 * 109.47562 * 59.99441 * 17 16 15 34 34 H 1.08995 * 109.47204 * 300.00025 * 18 17 16 35 35 H 1.08996 * 109.47366 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.46821 * 180.02562 * 19 18 17 37 37 H 1.08992 * 109.47240 * 60.00567 * 19 18 17 38 38 H 1.08992 * 109.47745 * 300.00572 * 20 19 18 39 39 H 1.09001 * 109.47002 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.46529 * 299.99747 * 21 16 15 41 41 H 1.08996 * 109.47353 * 59.99640 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5574 2.0120 -1.3984 5 1 1.4189 2.6692 0.6394 6 1 3.5165 1.4583 0.7590 7 6 2.0103 -1.2021 -0.0005 8 1 1.4787 -2.1326 0.1332 9 7 3.3690 -1.2081 -0.1706 10 6 4.1001 -0.5564 -1.2739 11 6 5.5229 -0.3087 -0.7134 12 6 5.7462 -1.5814 0.1456 13 6 4.3407 -1.8641 0.7166 14 1 4.2599 -1.4534 1.7231 15 6 4.0841 -3.3722 0.7447 16 6 2.8182 -3.6592 1.5547 17 6 3.0475 -3.2667 3.0157 18 6 1.7815 -3.5531 3.8255 19 6 1.4504 -5.0446 3.7439 20 6 1.2209 -5.4370 2.2830 21 6 2.4877 -5.1508 1.4731 22 1 -0.4851 0.8400 0.0004 23 1 3.6264 0.3891 -1.5377 24 1 4.1436 -1.2150 -2.1414 25 1 5.5486 0.5889 -0.0957 26 1 6.2548 -0.2475 -1.5187 27 1 6.0843 -2.4112 -0.4751 28 1 6.4588 -1.3857 0.9468 29 1 3.9544 -3.7378 -0.2739 30 1 4.9330 -3.8766 1.2064 31 1 1.9883 -3.0804 1.1491 32 1 3.8774 -3.8455 3.4213 33 1 3.2830 -2.2041 3.0738 34 1 0.9519 -2.9741 3.4197 35 1 1.9450 -3.2739 4.8663 36 1 0.5481 -5.2486 4.3205 37 1 2.2799 -5.6237 4.1497 38 1 0.3914 -4.8580 1.8772 39 1 0.9846 -6.4995 2.2250 40 1 2.3243 -5.4302 0.4323 41 1 3.3176 -5.7295 1.8787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057871697.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:07 Heat of formation + Delta-G solvation = -26.296504 kcal Electronic energy + Delta-G solvation = -18285.321784 eV Core-core repulsion = 15777.530708 eV Total energy + Delta-G solvation = -2507.791076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22003 -38.60637 -34.61200 -33.75805 -31.71003 -31.54794 -29.76059 -26.49119 -25.56382 -23.45818 -22.54335 -21.71172 -20.77509 -20.37563 -18.74647 -17.66812 -16.28857 -16.24688 -15.57194 -15.03939 -14.89517 -14.80702 -14.62397 -14.13292 -13.93487 -13.46578 -13.27691 -13.12811 -12.96138 -12.91519 -12.61527 -12.39527 -12.05181 -11.95130 -11.91955 -11.64741 -11.60551 -11.48360 -11.31540 -10.91013 -10.68600 -10.58608 -10.55646 -8.38323 -8.04378 -5.76224 1.29116 1.36196 1.49370 2.42930 3.12022 3.45783 3.86947 3.94337 4.00071 4.05048 4.16099 4.21997 4.41850 4.44225 4.56497 4.66423 4.72359 4.75488 4.79263 4.80518 4.90183 4.91623 4.95713 5.03617 5.08889 5.17580 5.18953 5.21209 5.27980 5.33996 5.40579 5.46477 5.50825 5.54502 5.65375 5.77656 5.85759 6.04738 6.45901 6.99644 7.57434 8.35739 9.02312 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022534 B = 0.009830 C = 0.007829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.273751 B = 2847.872293 C = 3575.470853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.015 4.015 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.311 1.311 6 H -0.257 1.257 7 C -0.229 4.229 8 H 0.056 0.944 9 N -0.619 5.619 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.117 4.117 13 C 0.143 3.857 14 H 0.029 0.971 15 C -0.102 4.102 16 C -0.105 4.105 17 C -0.100 4.100 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.104 4.104 22 H 0.261 0.739 23 H 0.021 0.979 24 H 0.031 0.969 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 -7.958 4.791 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.212 4.212 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.239 1.239 6 H -0.181 1.181 7 C -0.358 4.358 8 H 0.073 0.927 9 N -0.346 5.346 10 C -0.019 4.019 11 C -0.168 4.168 12 C -0.154 4.154 13 C 0.038 3.962 14 H 0.047 0.953 15 C -0.141 4.141 16 C -0.123 4.123 17 C -0.137 4.137 18 C -0.158 4.158 19 C -0.145 4.145 20 C -0.157 4.157 21 C -0.142 4.142 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.829 -7.868 4.806 14.222 hybrid contribution -0.600 1.258 -0.328 1.431 sum 10.229 -6.610 4.479 12.977 Atomic orbital electron populations 1.69903 1.07544 1.27244 1.55056 1.26490 0.95679 1.01555 0.97475 0.85723 0.78870 0.79871 0.77777 1.20557 1.23950 1.18093 1.18480 0.81206 0.91748 1.44392 0.92676 1.44751 1.01496 1.63713 1.24665 1.22063 0.92714 0.95228 0.91935 1.22754 0.95820 0.98149 1.00073 1.22596 0.95576 0.97537 0.99727 1.21393 0.89061 0.92519 0.93186 0.95349 1.21859 0.97161 0.96362 0.98748 1.21447 0.99198 0.96163 0.95538 1.21448 0.97513 0.99966 0.94804 1.21518 0.97561 0.97054 0.99678 1.21466 1.01794 0.95249 0.96021 1.21534 0.97370 1.00843 0.95969 1.21512 0.97882 0.95763 0.99019 0.92997 0.96115 0.95154 0.92595 0.88490 0.89953 0.89479 0.93987 0.90818 0.91813 0.90971 0.94120 0.95107 0.91321 0.91676 0.90465 0.94721 0.90684 0.93664 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.53 13.97 21.65 0.30 -60.23 16 2 C -0.02 -0.91 5.50 84.86 0.47 -0.45 16 3 Si 0.95 48.05 25.33 68.60 1.74 49.78 16 4 H -0.28 -13.65 6.70 99.48 0.67 -12.98 16 5 H -0.31 -15.95 7.11 99.48 0.71 -15.25 16 6 H -0.26 -12.41 6.99 99.48 0.70 -11.71 16 7 C -0.23 -12.99 9.21 84.03 0.77 -12.22 16 8 H 0.06 3.46 5.51 -2.91 -0.02 3.45 16 9 N -0.62 -29.35 2.38 -668.00 -1.59 -30.95 16 10 C 0.10 4.41 6.24 86.84 0.54 4.95 16 11 C -0.13 -4.19 7.08 31.99 0.23 -3.96 16 12 C -0.12 -3.46 6.46 31.78 0.21 -3.25 16 13 C 0.14 5.51 3.13 45.34 0.14 5.65 16 14 H 0.03 1.19 6.16 -2.39 -0.01 1.17 16 15 C -0.10 -3.54 4.14 30.60 0.13 -3.41 16 16 C -0.11 -3.85 2.06 -10.79 -0.02 -3.88 16 17 C -0.10 -3.31 4.99 30.59 0.15 -3.16 16 18 C -0.12 -3.81 5.92 30.59 0.18 -3.63 16 19 C -0.11 -2.83 5.92 30.60 0.18 -2.65 16 20 C -0.12 -3.48 5.93 30.61 0.18 -3.30 16 21 C -0.10 -3.19 5.21 30.61 0.16 -3.03 16 22 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 23 H 0.02 0.95 4.44 -2.39 -0.01 0.94 16 24 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.06 1.88 8.03 -2.39 -0.02 1.86 16 26 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.08 2.15 7.85 -2.39 -0.02 2.13 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 31 H 0.06 3.05 4.18 -2.38 -0.01 3.04 16 32 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.04 1.52 6.36 -2.39 -0.02 1.51 16 34 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -65.30 299.07 4.69 -60.62 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.92 Total: 13.10 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 3.32 Total: -32.33 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -1.29 Total: -91.18 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 1.74 Total: 49.78 kcal Total: -65.30 4.69 -60.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057871697.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.319 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds