Wall clock time and date at job start Sun Mar 29 2020 21:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86809 * 119.99484 * 2 1 4 4 H 1.48506 * 109.46718 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47017 * 300.00457 * 3 2 1 6 6 H 1.48490 * 109.47030 * 60.00501 * 3 2 1 7 7 C 1.37874 * 120.00564 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00027 * 180.27257 * 7 2 1 9 9 C 1.50699 * 119.99582 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47117 * 175.00185 * 9 7 2 11 11 C 1.46846 * 111.00052 * 300.65424 * 10 9 7 12 12 C 1.53048 * 109.51215 * 185.85321 * 11 10 9 13 13 C 1.53075 * 109.26137 * 300.86539 * 12 11 10 14 14 C 1.52951 * 109.50912 * 177.62273 * 13 12 11 15 15 C 1.53011 * 109.46161 * 60.12582 * 14 13 12 16 16 C 1.52998 * 109.47230 * 59.92825 * 15 14 13 17 17 C 1.53002 * 109.49686 * 300.00897 * 16 15 14 18 18 C 1.52960 * 109.48183 * 297.75203 * 13 12 11 19 19 C 1.53066 * 109.23456 * 57.64937 * 13 12 11 20 20 C 1.46844 * 110.99958 * 64.91084 * 10 9 7 21 21 H 0.96999 * 120.00298 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47701 * 295.00363 * 9 7 2 23 23 H 1.09004 * 109.47395 * 55.00406 * 9 7 2 24 24 H 1.08992 * 109.46492 * 305.87054 * 11 10 9 25 25 H 1.09001 * 109.45955 * 65.84369 * 11 10 9 26 26 H 1.09006 * 109.50368 * 180.93256 * 12 11 10 27 27 H 1.09004 * 109.53883 * 60.82835 * 12 11 10 28 28 H 1.08996 * 109.47173 * 180.11780 * 14 13 12 29 29 H 1.08997 * 109.47164 * 300.13039 * 14 13 12 30 30 H 1.09003 * 109.46769 * 299.93415 * 15 14 13 31 31 H 1.08998 * 109.47483 * 179.97438 * 15 14 13 32 32 H 1.09000 * 109.46579 * 180.02562 * 16 15 14 33 33 H 1.08996 * 109.46409 * 60.01704 * 16 15 14 34 34 H 1.09008 * 109.47229 * 300.01089 * 17 16 15 35 35 H 1.09003 * 109.47407 * 180.02562 * 17 16 15 36 36 H 1.08998 * 109.47786 * 59.87376 * 18 13 12 37 37 H 1.08999 * 109.47848 * 179.88913 * 18 13 12 38 38 H 1.09005 * 109.50952 * 182.42745 * 19 13 12 39 39 H 1.09007 * 109.54019 * 62.32335 * 19 13 12 40 40 H 1.08995 * 109.46193 * 294.17168 * 20 10 9 41 41 H 1.09004 * 109.45993 * 54.15188 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7092 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 0.0039 9 6 1.2512 -2.4991 -0.0005 10 7 2.2012 -3.6129 -0.1218 11 6 2.9826 -3.5056 -1.3605 12 6 3.8539 -4.7531 -1.5249 13 6 4.7875 -4.8797 -0.3185 14 6 5.6194 -6.1566 -0.4481 15 6 6.4527 -6.0942 -1.7298 16 6 7.3831 -4.8809 -1.6747 17 6 6.5501 -3.6041 -1.5456 18 6 5.7173 -3.6663 -0.2635 19 6 3.9512 -4.9410 0.9621 20 6 3.0769 -3.6882 1.0546 21 1 -0.4850 0.8400 0.0004 22 1 0.6937 -2.5968 0.9309 23 1 0.5588 -2.5189 -0.8421 24 1 2.3059 -3.4206 -2.2106 25 1 3.6189 -2.6219 -1.3130 26 1 4.4461 -4.6659 -2.4359 27 1 3.2180 -5.6363 -1.5874 28 1 6.2824 -6.2471 0.4123 29 1 4.9556 -7.0202 -0.4879 30 1 5.7896 -6.0047 -2.5903 31 1 7.0460 -7.0039 -1.8221 32 1 7.9764 -4.8363 -2.5880 33 1 8.0463 -4.9706 -0.8144 34 1 5.8867 -3.5144 -2.4059 35 1 7.2133 -2.7399 -1.5068 36 1 5.1232 -2.7571 -0.1716 37 1 6.3807 -3.7555 0.5967 38 1 4.6128 -4.9877 1.8271 39 1 3.3166 -5.8270 0.9410 40 1 3.7125 -2.8035 1.0913 41 1 2.4684 -3.7360 1.9577 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061559757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:20 Heat of formation + Delta-G solvation = -30.301863 kcal Electronic energy + Delta-G solvation = -18280.254707 eV Core-core repulsion = 15772.289945 eV Total energy + Delta-G solvation = -2507.964761 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03620 -36.47201 -33.18256 -31.76329 -30.62920 -30.14814 -27.68102 -25.39977 -23.22378 -22.62702 -22.17778 -20.96955 -19.58951 -17.65315 -16.33320 -15.49411 -14.98858 -14.43610 -14.30960 -13.97307 -13.74947 -13.54247 -13.18437 -12.81368 -12.37697 -11.98398 -11.70068 -11.68173 -11.61796 -11.13139 -11.00319 -10.89750 -10.70206 -10.67848 -10.42948 -10.32550 -10.17725 -9.89260 -9.76642 -9.53454 -9.41677 -9.24339 -8.41164 -7.04182 -5.99745 -4.09192 3.26666 3.34882 3.38051 4.41771 4.81970 4.85095 4.93814 5.15625 5.29943 5.31852 5.40841 5.50752 5.58310 5.62375 5.71562 5.78895 5.89533 5.94736 6.05640 6.14305 6.15975 6.19253 6.22186 6.26593 6.32123 6.36870 6.46563 6.59995 6.63354 6.67814 6.74156 6.85729 6.89005 7.06999 7.37307 7.56560 7.93268 8.15179 8.35034 8.41820 9.02454 9.57553 11.04653 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032412 B = 0.007210 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.658077 B = 3882.575074 C = 4321.282675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.186 3.814 10 N -0.541 5.541 11 C 0.064 3.936 12 C -0.107 4.107 13 C -0.053 4.053 14 C -0.106 4.106 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.105 4.105 20 C 0.063 3.937 21 H 0.261 0.739 22 H 0.026 0.974 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.117 -10.244 -1.980 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.060 3.940 10 N -0.265 5.265 11 C -0.064 4.064 12 C -0.145 4.145 13 C -0.053 4.053 14 C -0.143 4.143 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.151 4.151 19 C -0.143 4.143 20 C -0.066 4.066 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.680 -10.565 -2.000 15.876 hybrid contribution 0.856 1.872 0.092 2.060 sum 12.536 -8.693 -1.909 15.374 Atomic orbital electron populations 1.69956 1.05990 1.26619 1.50480 1.24967 0.94744 0.99075 0.95055 0.86630 0.80157 0.84143 0.77655 1.19870 1.20960 1.20970 1.21801 0.93324 0.92126 1.51180 0.92513 1.19743 0.91007 0.85624 0.97622 1.62411 1.17305 1.46018 1.00771 1.21854 0.95514 0.95538 0.93505 1.21763 0.96863 0.99231 0.96607 1.20475 0.94462 0.94227 0.96101 1.21568 0.97977 0.97537 0.97265 1.21559 0.98099 0.97384 0.98693 1.21509 0.97694 0.95218 1.00938 1.21572 0.98419 0.96862 0.98993 1.21678 0.97512 0.98965 0.96911 1.21666 0.97409 0.99290 0.95947 1.21871 0.94793 0.95641 0.94306 0.92922 0.95626 0.94876 0.92198 0.94136 0.92167 0.92183 0.92570 0.92301 0.91704 0.92781 0.92712 0.92512 0.91553 0.92640 0.90848 0.92769 0.92838 0.91950 0.94398 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.55 -15.05 7.72 -34.44 -0.27 -15.32 16 8 H 0.06 1.56 5.86 -52.49 -0.31 1.25 16 9 C 0.19 4.86 5.12 -4.98 -0.03 4.84 16 10 N -0.54 -11.78 4.85 -236.11 -1.15 -12.93 16 11 C 0.06 1.27 4.78 -3.83 -0.02 1.26 16 12 C -0.11 -1.68 4.18 -26.67 -0.11 -1.80 16 13 C -0.05 -0.76 0.51 -154.48 -0.08 -0.84 16 14 C -0.11 -1.28 4.74 -26.75 -0.13 -1.41 16 15 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 16 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 17 C -0.12 -1.57 5.65 -26.73 -0.15 -1.72 16 18 C -0.11 -1.67 4.15 -26.75 -0.11 -1.78 16 19 C -0.11 -1.66 4.88 -26.67 -0.13 -1.79 16 20 C 0.06 1.23 4.87 -3.83 -0.02 1.21 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.03 0.71 8.08 -51.93 -0.42 0.30 16 23 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 25 H 0.04 0.87 5.10 -51.93 -0.26 0.60 16 26 H 0.06 0.87 4.83 -51.93 -0.25 0.61 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.74 6.49 -51.93 -0.34 0.40 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.90 6.38 -51.92 -0.33 0.57 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.30 4.91 -51.93 -0.26 1.04 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.80 5.23 -51.93 -0.27 0.53 16 41 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 LS Contribution 293.60 15.07 4.42 4.42 Total: -1.00 -28.46 293.60 -9.52 -37.98 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.06 Total: -1.73 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -1.44 Total: -18.56 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.41 Total: -38.66 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.46 -9.52 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061559757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.676 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds