Wall clock time and date at job start Sun Mar 29 2020 21:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86809 * 119.99484 * 2 1 4 4 H 1.48506 * 109.46718 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47017 * 300.00457 * 3 2 1 6 6 H 1.48490 * 109.47030 * 60.00501 * 3 2 1 7 7 C 1.37874 * 120.00564 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00027 * 180.27257 * 7 2 1 9 9 C 1.50699 * 119.99582 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47117 * 175.00185 * 9 7 2 11 11 C 1.46846 * 111.00052 * 300.65424 * 10 9 7 12 12 C 1.53048 * 109.51215 * 185.85321 * 11 10 9 13 13 C 1.53075 * 109.26137 * 300.86539 * 12 11 10 14 14 C 1.52951 * 109.50912 * 177.62273 * 13 12 11 15 15 C 1.53011 * 109.46161 * 60.12582 * 14 13 12 16 16 C 1.52998 * 109.47230 * 59.92825 * 15 14 13 17 17 C 1.53002 * 109.49686 * 300.00897 * 16 15 14 18 18 C 1.52960 * 109.48183 * 297.75203 * 13 12 11 19 19 C 1.53066 * 109.23456 * 57.64937 * 13 12 11 20 20 C 1.46844 * 110.99958 * 64.91084 * 10 9 7 21 21 H 0.96999 * 120.00298 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47701 * 295.00363 * 9 7 2 23 23 H 1.09004 * 109.47395 * 55.00406 * 9 7 2 24 24 H 1.08992 * 109.46492 * 305.87054 * 11 10 9 25 25 H 1.09001 * 109.45955 * 65.84369 * 11 10 9 26 26 H 1.09006 * 109.50368 * 180.93256 * 12 11 10 27 27 H 1.09004 * 109.53883 * 60.82835 * 12 11 10 28 28 H 1.08996 * 109.47173 * 180.11780 * 14 13 12 29 29 H 1.08997 * 109.47164 * 300.13039 * 14 13 12 30 30 H 1.09003 * 109.46769 * 299.93415 * 15 14 13 31 31 H 1.08998 * 109.47483 * 179.97438 * 15 14 13 32 32 H 1.09000 * 109.46579 * 180.02562 * 16 15 14 33 33 H 1.08996 * 109.46409 * 60.01704 * 16 15 14 34 34 H 1.09008 * 109.47229 * 300.01089 * 17 16 15 35 35 H 1.09003 * 109.47407 * 180.02562 * 17 16 15 36 36 H 1.08998 * 109.47786 * 59.87376 * 18 13 12 37 37 H 1.08999 * 109.47848 * 179.88913 * 18 13 12 38 38 H 1.09005 * 109.50952 * 182.42745 * 19 13 12 39 39 H 1.09007 * 109.54019 * 62.32335 * 19 13 12 40 40 H 1.08995 * 109.46193 * 294.17168 * 20 10 9 41 41 H 1.09004 * 109.45993 * 54.15188 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7092 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 0.0039 9 6 1.2512 -2.4991 -0.0005 10 7 2.2012 -3.6129 -0.1218 11 6 2.9826 -3.5056 -1.3605 12 6 3.8539 -4.7531 -1.5249 13 6 4.7875 -4.8797 -0.3185 14 6 5.6194 -6.1566 -0.4481 15 6 6.4527 -6.0942 -1.7298 16 6 7.3831 -4.8809 -1.6747 17 6 6.5501 -3.6041 -1.5456 18 6 5.7173 -3.6663 -0.2635 19 6 3.9512 -4.9410 0.9621 20 6 3.0769 -3.6882 1.0546 21 1 -0.4850 0.8400 0.0004 22 1 0.6937 -2.5968 0.9309 23 1 0.5588 -2.5189 -0.8421 24 1 2.3059 -3.4206 -2.2106 25 1 3.6189 -2.6219 -1.3130 26 1 4.4461 -4.6659 -2.4359 27 1 3.2180 -5.6363 -1.5874 28 1 6.2824 -6.2471 0.4123 29 1 4.9556 -7.0202 -0.4879 30 1 5.7896 -6.0047 -2.5903 31 1 7.0460 -7.0039 -1.8221 32 1 7.9764 -4.8363 -2.5880 33 1 8.0463 -4.9706 -0.8144 34 1 5.8867 -3.5144 -2.4059 35 1 7.2133 -2.7399 -1.5068 36 1 5.1232 -2.7571 -0.1716 37 1 6.3807 -3.7555 0.5967 38 1 4.6128 -4.9877 1.8271 39 1 3.3166 -5.8270 0.9410 40 1 3.7125 -2.8035 1.0913 41 1 2.4684 -3.7360 1.9577 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061559757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:20 Heat of formation + Delta-G solvation = -46.701258 kcal Electronic energy + Delta-G solvation = -18280.965838 eV Core-core repulsion = 15772.289945 eV Total energy + Delta-G solvation = -2508.675893 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30705 -37.98102 -35.01504 -33.40067 -31.70411 -31.57284 -29.35978 -27.12848 -24.79532 -24.09282 -23.39368 -22.41707 -20.89831 -19.12886 -18.20365 -17.04576 -16.54581 -15.89798 -15.83901 -15.26593 -15.04897 -14.87815 -14.82439 -14.15089 -13.85566 -13.39068 -13.23612 -13.10905 -12.90894 -12.87241 -12.71406 -12.27974 -12.14341 -12.01475 -11.92784 -11.82051 -11.72842 -11.70038 -11.21264 -10.79538 -10.68003 -10.62535 -10.58384 -8.93978 -8.15855 -6.37074 1.32796 1.33748 1.45633 2.34522 3.06900 3.41866 3.74504 3.85092 3.89573 4.17141 4.35206 4.36412 4.46051 4.48122 4.58802 4.64427 4.68792 4.74741 4.83977 4.89636 4.91100 4.97831 5.04656 5.11503 5.19430 5.24973 5.26378 5.28864 5.31740 5.36810 5.38382 5.41065 5.50750 5.52340 5.70671 5.71439 5.73386 6.06248 6.30041 6.62462 6.85564 7.34538 8.85432 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032412 B = 0.007210 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.658077 B = 3882.575074 C = 4321.282675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.198 3.802 10 N -0.541 5.541 11 C 0.067 3.933 12 C -0.096 4.096 13 C -0.050 4.050 14 C -0.100 4.100 15 C -0.119 4.119 16 C -0.111 4.111 17 C -0.120 4.120 18 C -0.111 4.111 19 C -0.097 4.097 20 C 0.063 3.937 21 H 0.265 0.735 22 H 0.000 1.000 23 H 0.004 0.996 24 H 0.043 0.957 25 H 0.021 0.979 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.019 0.981 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.679 -11.328 -2.219 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.071 3.929 10 N -0.265 5.265 11 C -0.062 4.062 12 C -0.134 4.134 13 C -0.050 4.050 14 C -0.137 4.137 15 C -0.156 4.156 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.149 4.149 19 C -0.135 4.135 20 C -0.065 4.065 21 H 0.074 0.926 22 H 0.018 0.982 23 H 0.022 0.978 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.257 -11.665 -2.241 18.557 hybrid contribution 0.018 2.205 0.178 2.213 sum 14.275 -9.460 -2.063 17.249 Atomic orbital electron populations 1.70076 1.07580 1.27792 1.51297 1.25835 0.95622 1.02864 0.94587 0.85532 0.78906 0.79463 0.77964 1.19227 1.20211 1.20205 1.21987 0.93275 0.92921 1.50900 0.92679 1.19407 0.91426 0.87131 0.94904 1.62368 1.17917 1.43634 1.02559 1.21871 0.95136 0.97288 0.91859 1.21695 0.96585 0.96757 0.98333 1.20473 0.94286 0.95831 0.94440 1.21512 0.97955 0.95738 0.98519 1.21567 0.98071 0.98224 0.97737 1.21485 0.97514 0.93832 1.02041 1.21562 0.98329 0.98451 0.97444 1.21622 0.97461 0.97328 0.98444 1.21628 0.97218 0.96851 0.97786 1.21915 0.94454 0.97304 0.92833 0.92595 0.98206 0.97822 0.93793 0.96036 0.90343 0.91759 0.91397 0.91576 0.92076 0.90692 0.91324 0.91707 0.92541 0.92489 0.94597 0.91768 0.90684 0.91383 0.96236 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 2 C 0.01 0.58 5.46 84.65 0.46 1.04 16 3 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.55 -31.55 7.72 25.60 0.20 -31.35 16 8 H 0.06 3.12 5.86 -2.91 -0.02 3.10 16 9 C 0.20 10.93 5.12 85.56 0.44 11.37 16 10 N -0.54 -24.37 4.85 -900.91 -4.37 -28.75 16 11 C 0.07 2.71 4.78 86.33 0.41 3.12 16 12 C -0.10 -2.91 4.18 30.64 0.13 -2.78 16 13 C -0.05 -1.35 0.51 -52.16 -0.03 -1.37 16 14 C -0.10 -2.04 4.74 30.58 0.14 -1.89 16 15 C -0.12 -2.13 5.65 30.60 0.17 -1.95 16 16 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 17 C -0.12 -2.89 5.65 30.60 0.17 -2.71 16 18 C -0.11 -3.12 4.15 30.58 0.13 -3.00 16 19 C -0.10 -2.90 4.88 30.63 0.15 -2.76 16 20 C 0.06 2.53 4.87 86.33 0.42 2.95 16 21 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 22 H 0.00 -0.01 8.08 -2.39 -0.02 -0.03 16 23 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 24 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 25 H 0.02 0.95 5.10 -2.39 -0.01 0.94 16 26 H 0.08 2.12 4.83 -2.38 -0.01 2.10 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.16 6.49 -2.39 -0.02 1.14 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.45 6.38 -2.38 -0.02 1.43 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.27 4.91 -2.39 -0.01 1.26 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.02 0.85 5.23 -2.39 -0.01 0.84 16 41 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 Total: -1.00 -62.80 293.60 1.90 -60.89 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.98 Total: 8.43 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 2.98 Total: -31.22 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -4.09 Total: -85.00 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -62.80 1.90 -60.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061559757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.193 kcal (2) G-P(sol) polarization free energy of solvation -62.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds