Wall clock time and date at job start Sun Mar 29 2020 21:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.46722 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47349 * 300.00141 * 3 2 1 6 6 H 1.48499 * 109.46875 * 60.00478 * 3 2 1 7 7 C 1.37878 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99509 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47198 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.46851 * 110.99999 * 45.67000 * 11 10 9 13 13 C 1.53106 * 109.47975 * 186.21982 * 12 11 10 14 14 C 1.52748 * 109.28694 * 301.47514 * 13 12 11 15 15 C 1.53946 * 109.85555 * 177.82622 * 14 13 12 16 16 C 1.54967 * 104.12280 * 95.98742 * 15 14 13 17 17 C 1.54914 * 102.79368 * 37.65197 * 16 15 14 18 18 C 1.53570 * 110.01925 * 295.28013 * 14 13 12 19 19 C 1.52746 * 110.11243 * 56.70953 * 14 13 12 20 20 C 1.46835 * 111.00032 * 170.00142 * 11 10 9 21 21 H 0.97001 * 119.99851 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46594 * 60.00822 * 9 7 2 23 23 H 1.08996 * 109.47202 * 300.00680 * 9 7 2 24 24 H 1.08993 * 109.47007 * 60.00472 * 10 9 7 25 25 H 1.08996 * 109.47340 * 300.00278 * 10 9 7 26 26 H 1.09006 * 109.46837 * 306.22474 * 12 11 10 27 27 H 1.08997 * 109.46554 * 66.21791 * 12 11 10 28 28 H 1.08997 * 109.50619 * 181.52415 * 13 12 11 29 29 H 1.09001 * 109.53069 * 61.43138 * 13 12 11 30 30 H 1.09001 * 110.49820 * 214.64921 * 15 14 13 31 31 H 1.09002 * 110.49571 * 337.32934 * 15 14 13 32 32 H 1.09000 * 110.74649 * 279.32646 * 16 15 14 33 33 H 1.09002 * 110.74611 * 155.98416 * 16 15 14 34 34 H 1.09001 * 110.48522 * 203.54790 * 17 16 15 35 35 H 1.09004 * 110.47976 * 80.90820 * 17 16 15 36 36 H 1.09008 * 110.05462 * 359.87584 * 18 14 13 37 37 H 1.08995 * 110.05718 * 121.31487 * 18 14 13 38 38 H 1.09003 * 109.50078 * 183.34071 * 19 14 13 39 39 H 1.08998 * 109.53048 * 63.24942 * 19 14 13 40 40 H 1.08997 * 109.47273 * 293.77792 * 20 11 10 41 41 H 1.09006 * 109.47172 * 53.77464 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 0.4182 -4.9108 -0.9822 13 6 -0.4173 -6.1866 -0.8467 14 6 0.4803 -7.4031 -1.0650 15 6 -0.3355 -8.6952 -0.8779 16 6 -0.7523 -9.0909 -2.3171 17 6 0.4993 -8.7196 -3.1511 18 6 1.0102 -7.4136 -2.5064 19 6 1.6468 -7.3788 -0.0792 20 6 2.4167 -6.0650 -0.2392 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8717 -3.6044 0.8894 25 1 2.8719 -3.6044 -0.8904 26 1 -0.2140 -4.0415 -0.8011 27 1 0.8344 -4.8542 -1.9880 28 1 -1.2120 -6.1822 -1.5927 29 1 -0.8547 -6.2315 0.1507 30 1 0.2815 -9.4748 -0.4312 31 1 -1.2159 -8.5051 -0.2641 32 1 -1.6177 -8.5128 -2.6411 33 1 -0.9552 -10.1600 -2.3801 34 1 0.2269 -8.5498 -4.1927 35 1 1.2538 -9.5026 -3.0758 36 1 0.6257 -6.5519 -3.0523 37 1 2.1000 -7.3983 -2.5041 38 1 2.3124 -8.2177 -0.2823 39 1 1.2652 -7.4552 0.9389 40 1 2.8199 -6.0010 -1.2498 41 1 3.2345 -6.0331 0.4809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062953858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:06 Heat of formation + Delta-G solvation = -27.045769 kcal Electronic energy + Delta-G solvation = -17592.942437 eV Core-core repulsion = 15085.118871 eV Total energy + Delta-G solvation = -2507.823567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97824 -36.69925 -33.39114 -31.88447 -30.63537 -29.12057 -28.61865 -25.60639 -23.67452 -23.03274 -21.62187 -20.47539 -19.74038 -17.82196 -16.50658 -15.63525 -15.45986 -14.69779 -14.56995 -14.16962 -13.83311 -13.49835 -13.27384 -13.08908 -12.35445 -12.22795 -11.87870 -11.59294 -11.29657 -11.11609 -11.05151 -10.96317 -10.89342 -10.83360 -10.52679 -10.49867 -10.31202 -10.03181 -9.82343 -9.77244 -9.23207 -9.01423 -8.32629 -7.56991 -5.99038 -4.01000 3.31870 3.39236 3.43468 4.42346 4.53676 4.64144 4.68071 4.72698 5.22734 5.30704 5.35495 5.37253 5.42977 5.57412 5.60688 5.66033 5.72989 5.81072 5.86152 5.91411 5.95915 5.97602 6.06360 6.10671 6.24692 6.31283 6.33443 6.38920 6.42432 6.45800 6.56025 6.70588 6.71689 6.98051 7.58639 7.69337 7.87383 7.89397 8.08443 8.45567 9.05993 9.62673 11.12451 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.049450 B = 0.004854 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.089612 B = 5766.753626 C = 5929.084582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.538 5.538 12 C 0.051 3.949 13 C -0.101 4.101 14 C -0.060 4.060 15 C -0.115 4.115 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.101 4.101 20 C 0.054 3.946 21 H 0.260 0.740 22 H 0.020 0.980 23 H 0.024 0.976 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.092 0.908 27 H 0.026 0.974 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.027 0.973 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 -17.517 -3.883 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.077 4.077 13 C -0.139 4.139 14 C -0.061 4.061 15 C -0.152 4.152 16 C -0.162 4.162 17 C -0.161 4.161 18 C -0.156 4.156 19 C -0.138 4.138 20 C -0.074 4.074 21 H 0.069 0.931 22 H 0.038 0.962 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.110 0.890 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.220 -17.454 -3.418 17.787 hybrid contribution 0.871 1.126 -0.815 1.640 sum 0.651 -16.328 -4.233 16.880 Atomic orbital electron populations 1.69977 1.06022 1.26458 1.50887 1.24991 0.94829 0.99180 0.95317 0.86542 0.80112 0.83822 0.77567 1.19769 1.21054 1.20974 1.21240 0.93044 0.91047 1.50574 0.92741 1.19246 0.94134 0.90540 0.97739 1.22294 0.96979 0.88342 0.98799 1.61994 1.11554 1.03391 1.49393 1.22221 0.94080 0.98360 0.93066 1.21652 0.97055 0.93459 1.01746 1.20964 0.95397 0.95035 0.94658 1.22439 0.99444 0.96724 0.96601 1.22498 0.97845 1.00265 0.95587 1.22370 0.97373 0.97549 0.98828 1.22318 1.00415 0.97572 0.95269 1.21612 0.96300 0.96427 0.99495 1.22081 0.95092 0.91323 0.98934 0.93067 0.96160 0.95721 0.92091 0.96451 0.89009 0.95598 0.92116 0.91410 0.91859 0.91643 0.91612 0.92122 0.92133 0.92086 0.91603 0.91939 0.92307 0.91379 0.95534 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.54 4.22 -27.88 -0.12 0.42 16 10 C 0.06 1.37 5.21 -3.82 -0.02 1.35 16 11 N -0.54 -10.15 4.79 -234.58 -1.12 -11.28 16 12 C 0.05 0.91 4.65 -3.80 -0.02 0.89 16 13 C -0.10 -1.48 4.55 -26.81 -0.12 -1.60 16 14 C -0.06 -0.76 0.62 -153.98 -0.10 -0.85 16 15 C -0.11 -1.22 5.89 -25.20 -0.15 -1.37 16 16 C -0.12 -1.21 6.91 -24.68 -0.17 -1.38 16 17 C -0.12 -1.25 6.84 -25.02 -0.17 -1.42 16 18 C -0.12 -1.43 5.09 -25.73 -0.13 -1.56 16 19 C -0.10 -1.31 4.55 -26.80 -0.12 -1.43 16 20 C 0.05 0.84 5.22 -3.80 -0.02 0.82 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.02 0.56 6.20 -51.93 -0.32 0.23 16 23 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.09 1.90 5.79 -51.93 -0.30 1.60 16 27 H 0.03 0.47 6.80 -51.93 -0.35 0.12 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 30 H 0.06 0.63 7.84 -51.93 -0.41 0.23 16 31 H 0.06 0.69 7.81 -51.93 -0.41 0.29 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.87 6.64 -51.92 -0.35 0.52 16 37 H 0.06 0.77 6.63 -51.93 -0.34 0.42 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.42 6.80 -51.93 -0.35 0.06 16 41 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 LS Contribution 305.43 15.07 4.60 4.60 Total: -1.00 -29.51 305.43 -9.79 -39.31 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.44 Total: -3.37 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.55 Total: -19.78 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.39 Total: -37.57 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.51 -9.79 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062953858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.261 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds