Wall clock time and date at job start Sun Mar 29 2020 21:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.46722 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47349 * 300.00141 * 3 2 1 6 6 H 1.48499 * 109.46875 * 60.00478 * 3 2 1 7 7 C 1.37878 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99509 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47198 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.46851 * 110.99999 * 45.67000 * 11 10 9 13 13 C 1.53106 * 109.47975 * 186.21982 * 12 11 10 14 14 C 1.52748 * 109.28694 * 301.47514 * 13 12 11 15 15 C 1.53946 * 109.85555 * 177.82622 * 14 13 12 16 16 C 1.54967 * 104.12280 * 95.98742 * 15 14 13 17 17 C 1.54914 * 102.79368 * 37.65197 * 16 15 14 18 18 C 1.53570 * 110.01925 * 295.28013 * 14 13 12 19 19 C 1.52746 * 110.11243 * 56.70953 * 14 13 12 20 20 C 1.46835 * 111.00032 * 170.00142 * 11 10 9 21 21 H 0.97001 * 119.99851 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46594 * 60.00822 * 9 7 2 23 23 H 1.08996 * 109.47202 * 300.00680 * 9 7 2 24 24 H 1.08993 * 109.47007 * 60.00472 * 10 9 7 25 25 H 1.08996 * 109.47340 * 300.00278 * 10 9 7 26 26 H 1.09006 * 109.46837 * 306.22474 * 12 11 10 27 27 H 1.08997 * 109.46554 * 66.21791 * 12 11 10 28 28 H 1.08997 * 109.50619 * 181.52415 * 13 12 11 29 29 H 1.09001 * 109.53069 * 61.43138 * 13 12 11 30 30 H 1.09001 * 110.49820 * 214.64921 * 15 14 13 31 31 H 1.09002 * 110.49571 * 337.32934 * 15 14 13 32 32 H 1.09000 * 110.74649 * 279.32646 * 16 15 14 33 33 H 1.09002 * 110.74611 * 155.98416 * 16 15 14 34 34 H 1.09001 * 110.48522 * 203.54790 * 17 16 15 35 35 H 1.09004 * 110.47976 * 80.90820 * 17 16 15 36 36 H 1.09008 * 110.05462 * 359.87584 * 18 14 13 37 37 H 1.08995 * 110.05718 * 121.31487 * 18 14 13 38 38 H 1.09003 * 109.50078 * 183.34071 * 19 14 13 39 39 H 1.08998 * 109.53048 * 63.24942 * 19 14 13 40 40 H 1.08997 * 109.47273 * 293.77792 * 20 11 10 41 41 H 1.09006 * 109.47172 * 53.77464 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 0.4182 -4.9108 -0.9822 13 6 -0.4173 -6.1866 -0.8467 14 6 0.4803 -7.4031 -1.0650 15 6 -0.3355 -8.6952 -0.8779 16 6 -0.7523 -9.0909 -2.3171 17 6 0.4993 -8.7196 -3.1511 18 6 1.0102 -7.4136 -2.5064 19 6 1.6468 -7.3788 -0.0792 20 6 2.4167 -6.0650 -0.2392 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8717 -3.6044 0.8894 25 1 2.8719 -3.6044 -0.8904 26 1 -0.2140 -4.0415 -0.8011 27 1 0.8344 -4.8542 -1.9880 28 1 -1.2120 -6.1822 -1.5927 29 1 -0.8547 -6.2315 0.1507 30 1 0.2815 -9.4748 -0.4312 31 1 -1.2159 -8.5051 -0.2641 32 1 -1.6177 -8.5128 -2.6411 33 1 -0.9552 -10.1600 -2.3801 34 1 0.2269 -8.5498 -4.1927 35 1 1.2538 -9.5026 -3.0758 36 1 0.6257 -6.5519 -3.0523 37 1 2.1000 -7.3983 -2.5041 38 1 2.3124 -8.2177 -0.2823 39 1 1.2652 -7.4552 0.9389 40 1 2.8199 -6.0010 -1.2498 41 1 3.2345 -6.0331 0.4809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062953858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:06 Heat of formation + Delta-G solvation = -43.845060 kcal Electronic energy + Delta-G solvation = -17593.670909 eV Core-core repulsion = 15085.118871 eV Total energy + Delta-G solvation = -2508.552039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11726 -38.04887 -35.33496 -33.42472 -31.92581 -30.75457 -29.62244 -27.15221 -25.36945 -24.37158 -22.90529 -21.63964 -21.17333 -18.96381 -18.61236 -16.79665 -16.58038 -16.51284 -16.09473 -15.59372 -15.31503 -14.80610 -14.53624 -14.11414 -14.03295 -13.70472 -13.44186 -13.00413 -12.89694 -12.67394 -12.48884 -12.23070 -12.13908 -11.99658 -11.88364 -11.80606 -11.46907 -11.34869 -11.27924 -11.22992 -10.93141 -10.81331 -10.54123 -9.12340 -8.22012 -6.33499 1.38873 1.39480 1.52899 2.39079 3.10572 3.11659 3.66738 3.72308 3.74613 4.17347 4.21659 4.29130 4.32168 4.47541 4.53296 4.55571 4.63267 4.66557 4.69736 4.77704 4.84761 4.93118 4.98729 5.01746 5.03909 5.08819 5.15168 5.20429 5.23072 5.30620 5.35441 5.44162 5.52530 5.54316 5.59275 5.65761 5.77408 6.09569 6.33775 6.38301 6.83081 7.35707 8.90311 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.049450 B = 0.004854 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.089612 B = 5766.753626 C = 5929.084582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.031 3.969 10 C 0.077 3.923 11 N -0.546 5.546 12 C 0.055 3.945 13 C -0.094 4.094 14 C -0.059 4.059 15 C -0.110 4.110 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.094 4.094 20 C 0.052 3.948 21 H 0.264 0.736 22 H 0.000 1.000 23 H -0.008 1.008 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.053 0.947 27 H 0.021 0.979 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 -18.971 -4.189 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.050 4.050 11 N -0.271 5.271 12 C -0.073 4.073 13 C -0.132 4.132 14 C -0.060 4.060 15 C -0.148 4.148 16 C -0.159 4.159 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.132 4.132 20 C -0.076 4.076 21 H 0.073 0.927 22 H 0.018 0.982 23 H 0.010 0.990 24 H 0.081 0.919 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.783 -18.931 -3.725 19.310 hybrid contribution 0.531 1.577 -0.722 1.814 sum 1.314 -17.354 -4.447 17.963 Atomic orbital electron populations 1.70112 1.07822 1.27762 1.51452 1.25961 0.95761 1.03323 0.94525 0.85367 0.79022 0.78592 0.77870 1.18613 1.20259 1.20218 1.21655 0.93496 0.92318 1.50935 0.92307 1.19052 0.94263 0.92171 0.95126 1.21973 0.95769 0.88562 0.98719 1.61978 1.12125 1.03044 1.49980 1.22120 0.93762 0.98890 0.92528 1.21596 0.97137 0.92755 1.01673 1.20963 0.95108 0.94939 0.94946 1.22407 0.99266 0.95679 0.97420 1.22501 0.97440 1.01350 0.94646 1.22357 0.97792 0.96550 0.98955 1.22300 1.00280 0.98240 0.94888 1.21606 0.96566 0.95543 0.99494 1.22215 0.95062 0.91124 0.99186 0.92709 0.98226 0.98967 0.91943 0.96586 0.92812 0.96085 0.91249 0.92033 0.90445 0.91693 0.92051 0.90299 0.91672 0.90804 0.93350 0.92074 0.89658 0.91639 0.95413 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.55 -32.03 9.11 25.60 0.23 -31.80 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.72 4.22 29.85 0.13 1.85 16 10 C 0.08 3.47 5.21 86.30 0.45 3.92 16 11 N -0.55 -20.96 4.79 -896.08 -4.30 -25.25 16 12 C 0.05 2.06 4.65 86.35 0.40 2.46 16 13 C -0.09 -2.73 4.55 30.55 0.14 -2.59 16 14 C -0.06 -1.39 0.62 -51.84 -0.03 -1.42 16 15 C -0.11 -2.04 5.89 31.59 0.19 -1.85 16 16 C -0.12 -2.01 6.91 31.92 0.22 -1.79 16 17 C -0.12 -2.07 6.84 31.70 0.22 -1.86 16 18 C -0.12 -2.69 5.09 31.24 0.16 -2.53 16 19 C -0.09 -2.26 4.55 30.55 0.14 -2.12 16 20 C 0.05 1.55 5.22 86.35 0.45 2.01 16 21 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 22 H 0.00 -0.03 6.20 -2.39 -0.01 -0.04 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.02 0.71 8.08 -2.39 -0.02 0.69 16 26 H 0.05 2.40 5.79 -2.38 -0.01 2.38 16 27 H 0.02 0.80 6.80 -2.39 -0.02 0.78 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 30 H 0.08 1.25 7.84 -2.39 -0.02 1.23 16 31 H 0.06 1.22 7.81 -2.39 -0.02 1.20 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.25 6.64 -2.38 -0.02 1.23 16 37 H 0.06 1.38 6.63 -2.39 -0.02 1.37 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.03 0.84 6.80 -2.39 -0.02 0.82 16 41 H 0.07 2.10 8.12 -2.38 -0.02 2.08 16 Total: -1.00 -64.49 305.43 2.13 -62.36 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.96 Total: 8.44 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 3.15 Total: -35.13 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -4.01 Total: -82.69 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.49 2.13 -62.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062953858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.514 kcal (2) G-P(sol) polarization free energy of solvation -64.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds