Wall clock time and date at job start Sun Mar 29 2020 21:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46794 * 2 1 4 4 C 1.50693 * 109.47417 * 120.00148 * 2 1 3 5 5 H 1.08009 * 120.00046 * 114.31699 * 4 2 1 6 6 C 1.37876 * 120.00344 * 294.32249 * 4 2 1 7 7 N 1.31513 * 120.00472 * 155.04852 * 6 4 2 8 8 Si 1.86809 * 119.99627 * 335.31965 * 6 4 2 9 9 H 1.48494 * 109.46841 * 179.72766 * 8 6 4 10 10 H 1.48497 * 109.46901 * 299.72684 * 8 6 4 11 11 H 1.48501 * 109.46726 * 59.72958 * 8 6 4 12 12 N 1.46897 * 109.46761 * 240.00401 * 2 1 3 13 13 C 1.46904 * 111.00054 * 183.95091 * 12 2 1 14 14 C 1.46901 * 111.00395 * 59.99587 * 12 2 1 15 15 C 1.52998 * 109.47600 * 189.99939 * 14 12 2 16 16 C 1.52998 * 109.47351 * 180.02562 * 15 14 12 17 17 N 1.46499 * 109.47010 * 179.97438 * 16 15 14 18 18 C 1.36887 * 126.39534 * 89.99936 * 17 16 15 19 19 C 1.34668 * 106.81766 * 179.97438 * 18 17 16 20 20 N 1.34131 * 108.01725 * 0.02562 * 19 18 17 21 21 C 1.30499 * 109.25789 * 359.72291 * 20 19 18 22 22 H 1.09002 * 109.46962 * 291.91327 * 1 2 3 23 23 H 1.08998 * 109.47417 * 51.91130 * 1 2 3 24 24 H 1.09001 * 109.47132 * 171.91475 * 1 2 3 25 25 H 0.97000 * 119.99785 * 355.21976 * 7 6 4 26 26 H 1.09002 * 109.46603 * 59.99758 * 13 12 2 27 27 H 1.08996 * 109.47049 * 179.97438 * 13 12 2 28 28 H 1.08994 * 109.47094 * 299.99946 * 13 12 2 29 29 H 1.08996 * 109.47188 * 310.00376 * 14 12 2 30 30 H 1.09007 * 109.46801 * 70.00069 * 14 12 2 31 31 H 1.09002 * 109.46930 * 300.00093 * 15 14 12 32 32 H 1.08997 * 109.46947 * 60.00019 * 15 14 12 33 33 H 1.09002 * 109.46966 * 299.99809 * 16 15 14 34 34 H 1.08997 * 109.47293 * 59.99969 * 16 15 14 35 35 H 1.07998 * 126.59139 * 359.96633 * 18 17 16 36 36 H 1.07994 * 125.98798 * 179.97438 * 19 18 17 37 37 H 1.08002 * 125.64624 * 180.29066 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5756 -1.6390 1.1339 6 6 1.7986 -0.1751 2.4793 7 7 1.7729 -0.9578 3.5359 8 14 1.5107 1.6608 2.6696 9 1 1.2783 1.9795 4.1012 10 1 2.7029 2.4016 2.1847 11 1 0.3221 2.0604 1.8742 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0263 -2.4211 15 6 1.8624 -0.9042 -3.6342 16 6 1.3723 -0.2101 -4.9066 17 7 1.6735 -1.0504 -6.0682 18 6 0.8626 -2.0130 -6.6065 19 6 1.5237 -2.5370 -7.6562 20 7 2.7062 -1.9118 -7.7558 21 6 2.8005 -1.0163 -6.8112 22 1 -0.3633 0.3835 0.9534 23 1 -0.3634 0.6339 -0.8088 24 1 -0.3633 -1.0175 -0.1445 25 1 1.8492 -1.9189 3.4295 26 1 3.8029 -1.3531 -0.3069 27 1 3.8207 -1.3115 -2.0861 28 1 3.9186 0.2052 -1.1593 29 1 0.4721 0.1325 -2.3563 30 1 2.0517 0.9347 -2.5281 31 1 2.9389 -1.0629 -3.6990 32 1 1.3592 -1.8651 -3.5273 33 1 0.2959 -0.0510 -4.8421 34 1 1.8758 0.7507 -5.0134 35 1 -0.1187 -2.2975 -6.2565 36 1 1.1650 -3.3233 -8.3037 37 1 3.6416 -0.3584 -6.6493 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:05 Heat of formation + Delta-G solvation = 64.564498 kcal Electronic energy + Delta-G solvation = -16672.236908 eV Core-core repulsion = 14064.845518 eV Total energy + Delta-G solvation = -2607.391391 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.06734 -37.70634 -35.08627 -32.92132 -31.10032 -29.71545 -29.40426 -26.57838 -24.37216 -24.08406 -21.39400 -21.38199 -20.78651 -19.34083 -17.50828 -17.38591 -15.69199 -15.38023 -14.69119 -14.49728 -14.04284 -13.89715 -13.68430 -13.49117 -13.16698 -12.70818 -12.43304 -12.13073 -11.77959 -11.55202 -11.28552 -10.95809 -10.85627 -10.45313 -10.28362 -10.15376 -10.02832 -9.87794 -9.64706 -8.96202 -8.59374 -8.26090 -7.44842 -6.52459 -4.07878 2.00020 2.71486 3.11617 3.33773 3.38160 3.55830 4.45249 4.49600 4.51028 4.64316 4.81346 5.04143 5.12785 5.17571 5.26758 5.38774 5.49146 5.61924 5.76549 5.95467 6.04055 6.17182 6.22066 6.26909 6.37411 6.52439 6.55680 6.66248 6.79061 6.87611 7.10453 7.26057 7.69468 7.92861 8.00191 8.28534 8.39019 8.93706 9.56348 10.85888 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.054291 B = 0.004445 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.611689 B = 6298.357668 C = 6367.890615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.191 3.809 3 H -0.011 1.011 4 C -0.601 4.601 5 H 0.065 0.935 6 C 0.038 3.962 7 N -0.896 5.896 8 Si 1.034 2.966 9 H -0.284 1.284 10 H -0.286 1.286 11 H -0.279 1.279 12 N -0.529 5.529 13 C 0.038 3.962 14 C 0.051 3.949 15 C -0.130 4.130 16 C 0.104 3.896 17 N -0.454 5.454 18 C -0.054 4.054 19 C -0.036 4.036 20 N -0.501 5.501 21 C 0.179 3.821 22 H 0.053 0.947 23 H 0.019 0.981 24 H 0.051 0.949 25 H 0.271 0.729 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.012 0.988 29 H 0.075 0.925 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.172 0.828 36 H 0.167 0.833 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.939 2.733 -16.638 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.084 3.916 3 H 0.006 0.994 4 C -0.639 4.639 5 H 0.083 0.917 6 C -0.168 4.168 7 N -0.528 5.528 8 Si 0.862 3.138 9 H -0.210 1.210 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.253 5.253 13 C -0.111 4.111 14 C -0.079 4.079 15 C -0.168 4.168 16 C -0.019 4.019 17 N -0.136 5.136 18 C -0.187 4.187 19 C -0.184 4.184 20 N -0.219 5.219 21 C -0.104 4.104 22 H 0.072 0.928 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.190 0.810 36 H 0.184 0.816 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.814 3.368 -15.938 16.390 hybrid contribution -0.054 -0.221 -0.456 0.510 sum -1.868 3.146 -16.394 16.797 Atomic orbital electron populations 1.22169 0.98261 1.00161 0.99143 1.19559 0.91757 0.91895 0.88400 0.99360 1.21881 1.40906 1.10724 0.90348 0.91712 1.25618 0.93437 1.05624 0.92157 1.70841 1.43508 1.06248 1.32250 0.84167 0.77038 0.76398 0.76174 1.20963 1.21231 1.20530 1.62009 1.09861 1.52070 1.01383 1.22235 0.88162 0.99217 1.01449 1.22046 1.00953 0.94385 0.90467 1.21981 1.02224 1.00419 0.92188 1.21984 1.02874 0.93492 0.83562 1.45661 1.15230 1.28827 1.23870 1.22773 0.99500 0.96584 0.99854 1.22276 0.92453 1.03706 1.00012 1.70271 1.20076 1.08910 1.22637 1.24967 0.91972 1.01839 0.91573 0.92826 0.96184 0.92950 0.91950 0.90315 0.93623 0.96912 0.90661 0.95768 0.91237 0.90483 0.88940 0.88954 0.81035 0.81576 0.78177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.47 37.16 0.31 -2.67 16 2 C 0.19 4.42 1.66 -68.87 -0.11 4.31 16 3 H -0.01 -0.26 6.70 -51.93 -0.35 -0.61 16 4 C -0.60 -16.37 7.98 -34.44 -0.27 -16.65 16 5 H 0.06 1.92 6.88 -52.48 -0.36 1.56 16 6 C 0.04 1.07 5.15 -17.82 -0.09 0.98 16 7 N -0.90 -26.83 13.70 55.43 0.76 -26.07 16 8 Si 1.03 24.49 26.49 -169.99 -4.50 19.99 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.14 6.29 56.52 0.36 -5.78 16 12 N -0.53 -10.55 4.62 -236.29 -1.09 -11.64 16 13 C 0.04 0.71 9.05 60.07 0.54 1.26 16 14 C 0.05 0.77 4.77 -3.82 -0.02 0.75 16 15 C -0.13 -1.59 5.47 -26.73 -0.15 -1.74 16 16 C 0.10 0.98 6.15 -4.04 -0.02 0.95 16 17 N -0.45 -4.95 2.75 -118.58 -0.33 -5.27 16 18 C -0.05 -0.58 11.58 -16.56 -0.19 -0.77 16 19 C -0.04 -0.44 11.87 -17.81 -0.21 -0.65 16 20 N -0.50 -6.89 11.25 -14.67 -0.17 -7.06 16 21 C 0.18 2.08 12.56 -90.38 -1.14 0.94 16 22 H 0.05 1.21 5.67 -51.93 -0.29 0.91 16 23 H 0.02 0.35 6.64 -51.93 -0.34 0.01 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 26 H 0.08 1.68 6.34 -51.93 -0.33 1.35 16 27 H 0.05 0.74 6.30 -51.93 -0.33 0.41 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 1.11 6.00 -51.93 -0.31 0.80 16 30 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 296.77 15.07 4.47 4.47 Total: -1.00 -31.40 296.77 -7.86 -39.26 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.65 Total: -0.39 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -1.35 Total: -13.28 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.82 Total: -50.04 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.50 Total: 19.99 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.40 -7.86 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.821 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds