Wall clock time and date at job start Sun Mar 29 2020 21:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46794 * 2 1 4 4 C 1.50693 * 109.47417 * 120.00148 * 2 1 3 5 5 H 1.08009 * 120.00046 * 114.31699 * 4 2 1 6 6 C 1.37876 * 120.00344 * 294.32249 * 4 2 1 7 7 N 1.31513 * 120.00472 * 155.04852 * 6 4 2 8 8 Si 1.86809 * 119.99627 * 335.31965 * 6 4 2 9 9 H 1.48494 * 109.46841 * 179.72766 * 8 6 4 10 10 H 1.48497 * 109.46901 * 299.72684 * 8 6 4 11 11 H 1.48501 * 109.46726 * 59.72958 * 8 6 4 12 12 N 1.46897 * 109.46761 * 240.00401 * 2 1 3 13 13 C 1.46904 * 111.00054 * 183.95091 * 12 2 1 14 14 C 1.46901 * 111.00395 * 59.99587 * 12 2 1 15 15 C 1.52998 * 109.47600 * 189.99939 * 14 12 2 16 16 C 1.52998 * 109.47351 * 180.02562 * 15 14 12 17 17 N 1.46499 * 109.47010 * 179.97438 * 16 15 14 18 18 C 1.36887 * 126.39534 * 89.99936 * 17 16 15 19 19 C 1.34668 * 106.81766 * 179.97438 * 18 17 16 20 20 N 1.34131 * 108.01725 * 0.02562 * 19 18 17 21 21 C 1.30499 * 109.25789 * 359.72291 * 20 19 18 22 22 H 1.09002 * 109.46962 * 291.91327 * 1 2 3 23 23 H 1.08998 * 109.47417 * 51.91130 * 1 2 3 24 24 H 1.09001 * 109.47132 * 171.91475 * 1 2 3 25 25 H 0.97000 * 119.99785 * 355.21976 * 7 6 4 26 26 H 1.09002 * 109.46603 * 59.99758 * 13 12 2 27 27 H 1.08996 * 109.47049 * 179.97438 * 13 12 2 28 28 H 1.08994 * 109.47094 * 299.99946 * 13 12 2 29 29 H 1.08996 * 109.47188 * 310.00376 * 14 12 2 30 30 H 1.09007 * 109.46801 * 70.00069 * 14 12 2 31 31 H 1.09002 * 109.46930 * 300.00093 * 15 14 12 32 32 H 1.08997 * 109.46947 * 60.00019 * 15 14 12 33 33 H 1.09002 * 109.46966 * 299.99809 * 16 15 14 34 34 H 1.08997 * 109.47293 * 59.99969 * 16 15 14 35 35 H 1.07998 * 126.59139 * 359.96633 * 18 17 16 36 36 H 1.07994 * 125.98798 * 179.97438 * 19 18 17 37 37 H 1.08002 * 125.64624 * 180.29066 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5756 -1.6390 1.1339 6 6 1.7986 -0.1751 2.4793 7 7 1.7729 -0.9578 3.5359 8 14 1.5107 1.6608 2.6696 9 1 1.2783 1.9795 4.1012 10 1 2.7029 2.4016 2.1847 11 1 0.3221 2.0604 1.8742 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0263 -2.4211 15 6 1.8624 -0.9042 -3.6342 16 6 1.3723 -0.2101 -4.9066 17 7 1.6735 -1.0504 -6.0682 18 6 0.8626 -2.0130 -6.6065 19 6 1.5237 -2.5370 -7.6562 20 7 2.7062 -1.9118 -7.7558 21 6 2.8005 -1.0163 -6.8112 22 1 -0.3633 0.3835 0.9534 23 1 -0.3634 0.6339 -0.8088 24 1 -0.3633 -1.0175 -0.1445 25 1 1.8492 -1.9189 3.4295 26 1 3.8029 -1.3531 -0.3069 27 1 3.8207 -1.3115 -2.0861 28 1 3.9186 0.2052 -1.1593 29 1 0.4721 0.1325 -2.3563 30 1 2.0517 0.9347 -2.5281 31 1 2.9389 -1.0629 -3.6990 32 1 1.3592 -1.8651 -3.5273 33 1 0.2959 -0.0510 -4.8421 34 1 1.8758 0.7507 -5.0134 35 1 -0.1187 -2.2975 -6.2565 36 1 1.1650 -3.3233 -8.3037 37 1 3.6416 -0.3584 -6.6493 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:05 Heat of formation + Delta-G solvation = 44.496960 kcal Electronic energy + Delta-G solvation = -16673.107102 eV Core-core repulsion = 14064.845518 eV Total energy + Delta-G solvation = -2608.261585 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.89019 -39.18193 -36.18794 -34.74878 -32.50920 -31.17125 -30.28049 -27.94871 -26.17025 -25.36764 -22.65125 -22.22401 -21.64252 -21.01980 -19.54184 -18.24737 -17.07573 -16.32439 -15.93409 -15.86526 -15.38425 -15.18783 -14.82361 -14.74616 -14.16695 -14.11432 -14.01055 -13.40356 -13.29231 -12.92317 -12.70596 -12.64064 -12.24733 -12.14145 -11.97300 -11.68096 -11.50218 -10.96999 -10.92744 -10.54495 -10.37145 -9.42246 -9.01054 -8.74205 -6.29441 1.18025 1.45685 1.51398 1.71243 1.93799 2.24907 2.49956 3.01143 3.22758 3.75746 3.90564 3.99288 4.08989 4.19049 4.30625 4.46888 4.52456 4.56310 4.61541 4.64771 4.75838 4.79817 4.82518 4.90188 4.98601 5.09697 5.17991 5.28607 5.41042 5.54035 5.85615 5.88801 6.08964 6.22562 6.31895 6.62319 6.76087 7.16570 7.44220 8.62654 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.054291 B = 0.004445 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.611689 B = 6298.357668 C = 6367.890615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.190 3.810 3 H -0.008 1.008 4 C -0.600 4.600 5 H 0.023 0.977 6 C -0.013 4.013 7 N -0.932 5.932 8 Si 1.076 2.924 9 H -0.289 1.289 10 H -0.270 1.270 11 H -0.246 1.246 12 N -0.548 5.548 13 C 0.044 3.956 14 C 0.052 3.948 15 C -0.116 4.116 16 C 0.111 3.889 17 N -0.456 5.456 18 C -0.053 4.053 19 C -0.061 4.061 20 N -0.541 5.541 21 C 0.172 3.828 22 H 0.039 0.961 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.253 0.747 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.017 0.983 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.196 0.804 36 H 0.180 0.820 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 4.958 -18.530 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.082 3.918 3 H 0.009 0.991 4 C -0.638 4.638 5 H 0.041 0.959 6 C -0.212 4.212 7 N -0.567 5.567 8 Si 0.897 3.103 9 H -0.216 1.216 10 H -0.196 1.196 11 H -0.170 1.170 12 N -0.273 5.273 13 C -0.105 4.105 14 C -0.077 4.077 15 C -0.155 4.155 16 C -0.011 4.011 17 N -0.137 5.137 18 C -0.187 4.187 19 C -0.207 4.207 20 N -0.260 5.260 21 C -0.110 4.110 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.213 0.787 36 H 0.197 0.803 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.824 5.580 -17.870 18.933 hybrid contribution 0.316 -1.025 0.070 1.075 sum -2.508 4.555 -17.800 18.544 Atomic orbital electron populations 1.22040 0.96624 1.00473 1.00023 1.19426 0.92892 0.91387 0.88048 0.99099 1.22079 1.39749 1.09264 0.92724 0.95894 1.27023 0.92877 1.09352 0.91997 1.70973 1.46856 1.05427 1.33402 0.83642 0.78857 0.71330 0.76453 1.21554 1.19559 1.16985 1.61889 1.10208 1.52932 1.02251 1.22136 0.88054 0.99211 1.01051 1.22129 1.01442 0.95138 0.88969 1.21796 1.01704 0.99431 0.92579 1.22002 1.04216 0.93510 0.81398 1.45767 1.15023 1.28933 1.24010 1.23192 1.00240 0.96002 0.99276 1.22659 0.92457 1.04512 1.01122 1.70241 1.21267 1.10262 1.24193 1.25494 0.92755 1.01625 0.91127 0.94177 0.92049 0.93940 0.93770 0.94100 0.90821 0.96422 0.89731 0.94250 0.91874 0.92119 0.87112 0.86657 0.78689 0.80329 0.75752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 8.47 71.98 0.61 -4.76 16 2 C 0.19 8.50 1.66 44.17 0.07 8.58 16 3 H -0.01 -0.37 6.70 -2.39 -0.02 -0.39 16 4 C -0.60 -33.32 7.98 25.60 0.20 -33.12 16 5 H 0.02 1.43 6.88 -2.91 -0.02 1.41 16 6 C -0.01 -0.74 5.15 84.65 0.44 -0.30 16 7 N -0.93 -57.65 13.70 21.45 0.29 -57.36 16 8 Si 1.08 48.37 26.49 68.60 1.82 50.19 16 9 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.25 -9.70 6.29 99.48 0.63 -9.07 16 12 N -0.55 -20.94 4.62 -901.49 -4.17 -25.11 16 13 C 0.04 1.62 9.05 127.69 1.16 2.78 16 14 C 0.05 1.37 4.77 86.30 0.41 1.78 16 15 C -0.12 -2.48 5.47 30.59 0.17 -2.31 16 16 C 0.11 1.61 6.15 86.38 0.53 2.14 16 17 N -0.46 -8.53 2.75 -529.08 -1.46 -9.99 16 18 C -0.05 -1.03 11.58 83.09 0.96 -0.07 16 19 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 20 N -0.54 -14.23 11.25 -200.32 -2.25 -16.48 16 21 C 0.17 3.61 12.56 180.26 2.26 5.87 16 22 H 0.04 1.70 5.67 -2.39 -0.01 1.68 16 23 H 0.06 1.94 6.64 -2.39 -0.02 1.93 16 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.25 16.01 8.73 -92.71 -0.81 15.20 16 26 H 0.04 1.79 6.34 -2.39 -0.02 1.78 16 27 H 0.07 2.27 6.30 -2.39 -0.02 2.25 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 2.10 6.00 -2.39 -0.01 2.09 16 30 H 0.04 0.96 8.12 -2.38 -0.02 0.94 16 31 H 0.06 1.43 6.47 -2.39 -0.02 1.42 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.23 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -70.21 296.77 2.96 -67.25 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.92 Total: 11.28 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 7.81 Total: -19.77 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -7.58 Total: -108.94 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 1.82 Total: 50.19 kcal Total: -70.21 2.96 -67.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.743 kcal (2) G-P(sol) polarization free energy of solvation -70.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds