Wall clock time and date at job start Sun Mar 29 2020 21:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47385 * 2 1 4 4 C 1.36935 * 119.99446 * 272.56844 * 3 2 1 5 5 H 1.08006 * 119.99838 * 146.31233 * 4 3 2 6 6 C 1.38806 * 120.00501 * 326.30894 * 4 3 2 7 7 N 1.31622 * 119.99735 * 336.65426 * 6 4 3 8 8 Si 1.86795 * 120.00320 * 156.64567 * 6 4 3 9 9 H 1.48500 * 109.47051 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47427 * 120.00239 * 8 6 4 11 11 H 1.48504 * 109.47472 * 240.00378 * 8 6 4 12 12 C 1.46505 * 120.00162 * 92.56105 * 3 2 1 13 13 C 1.52997 * 109.47264 * 270.00318 * 12 3 2 14 14 N 1.46503 * 109.46895 * 179.97438 * 13 12 3 15 15 N 1.40081 * 126.03969 * 269.97919 * 14 13 12 16 16 C 1.30838 * 108.20765 * 180.02562 * 15 14 13 17 17 C 1.50697 * 125.90008 * 179.97438 * 16 15 14 18 18 C 1.39874 * 108.19961 * 359.78142 * 16 15 14 19 19 C 1.34947 * 126.03567 * 90.00216 * 14 13 12 20 20 C 1.50702 * 126.12808 * 359.94026 * 19 14 13 21 21 H 1.09001 * 109.47398 * 300.00782 * 1 2 3 22 22 H 1.09001 * 109.47120 * 60.00144 * 1 2 3 23 23 H 1.08993 * 109.47429 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47086 * 239.99484 * 2 1 3 25 25 H 1.09004 * 109.46426 * 119.99620 * 2 1 3 26 26 H 0.97000 * 119.99772 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.46453 * 150.00251 * 12 3 2 28 28 H 1.08994 * 109.46579 * 30.00587 * 12 3 2 29 29 H 1.09000 * 109.46793 * 60.00233 * 13 12 3 30 30 H 1.08997 * 109.47462 * 300.00207 * 13 12 3 31 31 H 1.08997 * 109.46823 * 89.97741 * 17 16 15 32 32 H 1.09000 * 109.47214 * 209.97729 * 17 16 15 33 33 H 1.09002 * 109.47417 * 329.98350 * 17 16 15 34 34 H 1.08001 * 126.03970 * 180.23554 * 18 16 15 35 35 H 1.08996 * 109.47431 * 89.99699 * 20 19 14 36 36 H 1.09004 * 109.47161 * 330.00236 * 20 19 14 37 37 H 1.08994 * 109.47428 * 210.00614 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1965 2.0443 -1.1848 5 1 2.0192 3.1083 -1.2400 6 6 2.6049 1.3492 -2.3147 7 7 3.2508 0.2093 -2.1884 8 14 2.2377 2.0313 -4.0145 9 1 1.5064 3.3172 -3.8844 10 1 3.5119 2.2585 -4.7426 11 1 1.4034 1.0608 -4.7678 12 6 2.3161 2.0530 1.2675 13 6 1.0611 2.7672 1.7732 14 7 1.3587 3.4384 3.0410 15 7 1.2223 2.8826 4.3196 16 6 1.5822 3.7836 5.1975 17 6 1.5893 3.6060 6.6939 18 6 1.9636 4.9386 4.5068 19 6 1.8121 4.7014 3.1833 20 6 2.1037 5.6717 2.0677 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.5365 -0.2762 -2.9780 27 1 3.1120 2.7817 1.1142 28 1 2.6357 1.3151 2.0033 29 1 0.2652 2.0383 1.9265 30 1 0.7414 3.5049 1.0374 31 1 2.5587 3.2202 7.0094 32 1 1.4067 4.5670 7.1747 33 1 0.8077 2.9022 6.9800 34 1 2.3148 5.8580 4.9515 35 1 1.2062 6.2481 1.8435 36 1 2.4134 5.1214 1.1791 37 1 2.9026 6.3473 2.3732 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068815598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:26 Heat of formation + Delta-G solvation = 83.041724 kcal Electronic energy + Delta-G solvation = -17038.699069 eV Core-core repulsion = 14432.108911 eV Total energy + Delta-G solvation = -2606.590158 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91886 -36.38023 -33.86096 -32.02526 -31.32502 -30.21988 -28.74831 -26.77465 -26.25923 -24.15451 -22.09253 -20.28665 -20.04139 -18.88869 -16.79213 -16.12514 -15.13141 -14.77104 -14.34149 -13.86956 -13.53947 -13.52268 -13.17729 -12.88596 -12.64288 -12.52283 -12.24464 -12.17018 -11.94797 -11.57556 -11.42227 -11.24970 -10.89412 -10.70919 -10.57176 -10.17928 -10.07455 -9.77731 -9.62054 -8.80625 -8.54990 -8.14572 -6.72793 -5.86026 -3.43744 2.23369 2.91776 3.04979 3.30285 3.39487 3.41178 4.40998 4.86034 4.89423 5.21162 5.25493 5.47994 5.49762 5.53891 5.64621 5.69971 5.82769 5.86577 5.96099 5.99786 6.06669 6.09523 6.28825 6.43835 6.51488 6.57166 6.60192 6.82547 6.86108 7.03249 7.20689 7.46198 7.68160 7.75662 8.13957 8.40205 9.08602 9.71523 10.27066 11.13022 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033578 B = 0.006095 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.671967 B = 4592.782788 C = 5105.258555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 N -0.578 5.578 4 C -0.265 4.265 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.884 5.884 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.287 1.287 12 C 0.138 3.862 13 C 0.105 3.895 14 N -0.351 5.351 15 N -0.299 5.299 16 C 0.057 3.943 17 C -0.067 4.067 18 C -0.287 4.287 19 C 0.087 3.913 20 C -0.095 4.095 21 H 0.032 0.968 22 H 0.050 0.950 23 H 0.035 0.965 24 H 0.101 0.899 25 H 0.023 0.977 26 H 0.255 0.745 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 7.559 10.212 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 N -0.299 5.299 4 C -0.394 4.394 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.213 1.213 12 C 0.010 3.990 13 C -0.019 4.019 14 N -0.133 5.133 15 N -0.123 5.123 16 C -0.108 4.108 17 C -0.126 4.126 18 C -0.317 4.317 19 C -0.042 4.042 20 C -0.153 4.153 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.119 0.881 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.562 6.157 9.741 12.062 hybrid contribution 0.030 1.091 -0.863 1.392 sum -3.531 7.248 8.879 11.993 Atomic orbital electron populations 1.22348 1.00672 0.98896 1.00353 1.21085 0.90214 0.86147 1.01966 1.43827 1.74293 1.11577 1.00178 1.19053 1.40685 0.93331 0.86345 0.91933 1.25085 0.97110 0.97746 0.98888 1.69994 1.36832 1.17190 1.28600 0.86316 0.77863 0.78656 0.84468 1.20047 1.21598 1.21340 1.21111 0.92622 0.95924 0.89377 1.22981 1.02547 0.97554 0.78770 1.48887 1.49298 1.09159 1.05943 1.77285 1.25273 1.22026 0.87698 1.22197 0.99869 0.92418 0.96310 1.20086 1.02600 1.02441 0.87438 1.20981 1.17817 1.01149 0.91733 1.21119 0.99049 0.87449 0.96567 1.20466 1.02437 0.96864 0.95553 0.94875 0.93101 0.94596 0.88124 0.95843 0.93449 0.93050 0.93962 0.89488 0.89368 0.90979 0.90949 0.91350 0.84317 0.90609 0.90273 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.23 37.16 0.38 -2.95 16 2 C 0.13 3.10 6.07 -4.04 -0.02 3.07 16 3 N -0.58 -14.05 2.46 -173.24 -0.43 -14.47 16 4 C -0.26 -6.93 9.48 -15.06 -0.14 -7.07 16 5 H 0.06 1.60 7.93 -52.48 -0.42 1.19 16 6 C 0.01 0.33 4.97 -17.43 -0.09 0.24 16 7 N -0.88 -24.95 11.29 55.49 0.63 -24.32 16 8 Si 0.90 20.90 29.61 -169.99 -5.03 15.87 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.14 2.95 6.04 -4.04 -0.02 2.93 16 13 C 0.10 1.96 6.39 -4.04 -0.03 1.93 16 14 N -0.35 -6.38 3.61 -57.14 -0.21 -6.59 16 15 N -0.30 -5.59 12.58 33.67 0.42 -5.17 16 16 C 0.06 0.90 7.22 -82.41 -0.59 0.31 16 17 C -0.07 -0.75 10.45 36.00 0.38 -0.38 16 18 C -0.29 -4.30 10.65 -40.01 -0.43 -4.72 16 19 C 0.09 1.39 6.93 -82.26 -0.57 0.82 16 20 C -0.09 -1.20 9.90 36.01 0.36 -0.85 16 21 H 0.03 0.63 6.44 -51.93 -0.33 0.30 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.10 2.67 5.30 -51.93 -0.28 2.40 16 25 H 0.02 0.53 7.86 -51.93 -0.41 0.12 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.05 1.12 8.04 -51.93 -0.42 0.71 16 28 H 0.04 0.93 7.87 -51.93 -0.41 0.53 16 29 H 0.09 1.67 6.44 -51.93 -0.33 1.34 16 30 H 0.09 1.60 7.66 -51.93 -0.40 1.20 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.10 7.73 -51.93 -0.40 0.70 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -29.69 307.81 -6.67 -36.36 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.91 Total: 0.34 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.78 Total: -6.66 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.42 Total: -50.55 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.69 -6.67 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068815598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.406 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds