Wall clock time and date at job start Sun Mar 29 2020 21:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47385 * 2 1 4 4 C 1.36935 * 119.99446 * 272.56844 * 3 2 1 5 5 H 1.08006 * 119.99838 * 146.31233 * 4 3 2 6 6 C 1.38806 * 120.00501 * 326.30894 * 4 3 2 7 7 N 1.31622 * 119.99735 * 336.65426 * 6 4 3 8 8 Si 1.86795 * 120.00320 * 156.64567 * 6 4 3 9 9 H 1.48500 * 109.47051 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47427 * 120.00239 * 8 6 4 11 11 H 1.48504 * 109.47472 * 240.00378 * 8 6 4 12 12 C 1.46505 * 120.00162 * 92.56105 * 3 2 1 13 13 C 1.52997 * 109.47264 * 270.00318 * 12 3 2 14 14 N 1.46503 * 109.46895 * 179.97438 * 13 12 3 15 15 N 1.40081 * 126.03969 * 269.97919 * 14 13 12 16 16 C 1.30838 * 108.20765 * 180.02562 * 15 14 13 17 17 C 1.50697 * 125.90008 * 179.97438 * 16 15 14 18 18 C 1.39874 * 108.19961 * 359.78142 * 16 15 14 19 19 C 1.34947 * 126.03567 * 90.00216 * 14 13 12 20 20 C 1.50702 * 126.12808 * 359.94026 * 19 14 13 21 21 H 1.09001 * 109.47398 * 300.00782 * 1 2 3 22 22 H 1.09001 * 109.47120 * 60.00144 * 1 2 3 23 23 H 1.08993 * 109.47429 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47086 * 239.99484 * 2 1 3 25 25 H 1.09004 * 109.46426 * 119.99620 * 2 1 3 26 26 H 0.97000 * 119.99772 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.46453 * 150.00251 * 12 3 2 28 28 H 1.08994 * 109.46579 * 30.00587 * 12 3 2 29 29 H 1.09000 * 109.46793 * 60.00233 * 13 12 3 30 30 H 1.08997 * 109.47462 * 300.00207 * 13 12 3 31 31 H 1.08997 * 109.46823 * 89.97741 * 17 16 15 32 32 H 1.09000 * 109.47214 * 209.97729 * 17 16 15 33 33 H 1.09002 * 109.47417 * 329.98350 * 17 16 15 34 34 H 1.08001 * 126.03970 * 180.23554 * 18 16 15 35 35 H 1.08996 * 109.47431 * 89.99699 * 20 19 14 36 36 H 1.09004 * 109.47161 * 330.00236 * 20 19 14 37 37 H 1.08994 * 109.47428 * 210.00614 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1965 2.0443 -1.1848 5 1 2.0192 3.1083 -1.2400 6 6 2.6049 1.3492 -2.3147 7 7 3.2508 0.2093 -2.1884 8 14 2.2377 2.0313 -4.0145 9 1 1.5064 3.3172 -3.8844 10 1 3.5119 2.2585 -4.7426 11 1 1.4034 1.0608 -4.7678 12 6 2.3161 2.0530 1.2675 13 6 1.0611 2.7672 1.7732 14 7 1.3587 3.4384 3.0410 15 7 1.2223 2.8826 4.3196 16 6 1.5822 3.7836 5.1975 17 6 1.5893 3.6060 6.6939 18 6 1.9636 4.9386 4.5068 19 6 1.8121 4.7014 3.1833 20 6 2.1037 5.6717 2.0677 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.5365 -0.2762 -2.9780 27 1 3.1120 2.7817 1.1142 28 1 2.6357 1.3151 2.0033 29 1 0.2652 2.0383 1.9265 30 1 0.7414 3.5049 1.0374 31 1 2.5587 3.2202 7.0094 32 1 1.4067 4.5670 7.1747 33 1 0.8077 2.9022 6.9800 34 1 2.3148 5.8580 4.9515 35 1 1.2062 6.2481 1.8435 36 1 2.4134 5.1214 1.1791 37 1 2.9026 6.3473 2.3732 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068815598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:25 Heat of formation + Delta-G solvation = 66.536832 kcal Electronic energy + Delta-G solvation = -17039.414775 eV Core-core repulsion = 14432.108911 eV Total energy + Delta-G solvation = -2607.305864 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15671 -38.19167 -35.27191 -33.62142 -32.84352 -31.70797 -30.23303 -27.97893 -27.71740 -25.93212 -23.69895 -22.16766 -21.25648 -20.12355 -18.70815 -17.54209 -16.78073 -16.35802 -15.97822 -15.54251 -15.03831 -14.68890 -14.35477 -14.12952 -14.00695 -13.92422 -13.69394 -13.41485 -13.24840 -13.14699 -12.80625 -12.75763 -12.65718 -12.38686 -12.36730 -11.96399 -11.63818 -11.48203 -11.34977 -10.61687 -9.99761 -9.41141 -8.68445 -7.85943 -5.48235 0.98680 1.45821 1.49522 1.58585 1.62924 1.89809 2.49854 3.20767 3.54810 3.69559 3.82236 4.06907 4.24510 4.26336 4.41631 4.50811 4.58216 4.70873 4.71529 4.78856 4.84482 4.86799 4.89696 4.99627 5.03078 5.08668 5.11046 5.19796 5.41094 5.44745 5.63799 5.81073 5.89275 6.19457 6.40724 6.90089 7.09463 7.76200 8.29363 9.10612 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033578 B = 0.006095 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.671967 B = 4592.782788 C = 5105.258555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.130 3.870 3 N -0.592 5.592 4 C -0.268 4.268 5 H 0.067 0.933 6 C -0.037 4.037 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.263 1.263 10 H -0.292 1.292 11 H -0.290 1.290 12 C 0.148 3.852 13 C 0.127 3.873 14 N -0.373 5.373 15 N -0.346 5.346 16 C 0.056 3.944 17 C -0.066 4.066 18 C -0.289 4.289 19 C 0.076 3.924 20 C -0.091 4.091 21 H 0.044 0.956 22 H 0.039 0.961 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.253 0.747 27 H 0.041 0.959 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 9.428 11.116 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.004 3.996 3 N -0.314 5.314 4 C -0.398 4.398 5 H 0.085 0.915 6 C -0.234 4.234 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.187 1.187 10 H -0.219 1.219 11 H -0.217 1.217 12 C 0.020 3.980 13 C 0.003 3.997 14 N -0.155 5.155 15 N -0.169 5.169 16 C -0.110 4.110 17 C -0.124 4.124 18 C -0.318 4.318 19 C -0.052 4.052 20 C -0.150 4.150 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.188 0.812 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.195 8.053 10.676 14.015 hybrid contribution 0.281 0.549 -0.997 1.173 sum -3.914 8.601 9.678 13.527 Atomic orbital electron populations 1.22152 0.98013 1.00322 1.00291 1.21023 0.92339 0.85731 1.00481 1.43996 1.74825 1.11882 1.00679 1.19339 1.39640 0.93672 0.87132 0.91535 1.25811 0.97279 0.98226 1.02115 1.70127 1.38361 1.18635 1.29192 0.85331 0.77321 0.78333 0.80179 1.18726 1.21901 1.21650 1.21020 0.93800 0.95203 0.87964 1.22436 1.00294 0.97333 0.79624 1.48805 1.51079 1.10101 1.05511 1.77245 1.27547 1.23819 0.88324 1.22998 0.97921 0.92066 0.97994 1.20260 1.03325 1.04205 0.84627 1.21423 1.17052 1.02021 0.91305 1.21776 0.98228 0.87021 0.98141 1.20560 1.04087 0.96465 0.93842 0.93745 0.94186 0.92437 0.90974 0.95951 0.93803 0.94041 0.95397 0.90210 0.88806 0.89800 0.88145 0.91269 0.81209 0.88852 0.91962 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 10.23 71.98 0.74 -5.23 16 2 C 0.13 6.21 6.07 86.38 0.52 6.74 16 3 N -0.59 -29.14 2.46 -702.01 -1.72 -30.86 16 4 C -0.27 -14.08 9.48 84.03 0.80 -13.28 16 5 H 0.07 3.38 7.93 -2.91 -0.02 3.36 16 6 C -0.04 -1.99 4.97 84.86 0.42 -1.57 16 7 N -0.92 -52.92 11.29 21.65 0.24 -52.67 16 8 Si 0.96 43.07 29.61 68.60 2.03 45.10 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.15 6.42 6.04 86.38 0.52 6.94 16 13 C 0.13 4.74 6.39 86.38 0.55 5.29 16 14 N -0.37 -13.35 3.61 -334.70 -1.21 -14.56 16 15 N -0.35 -12.74 12.58 -47.38 -0.60 -13.34 16 16 C 0.06 1.65 7.22 43.10 0.31 1.96 16 17 C -0.07 -1.30 10.45 71.23 0.74 -0.56 16 18 C -0.29 -7.90 10.65 21.99 0.23 -7.67 16 19 C 0.08 2.31 6.93 41.41 0.29 2.59 16 20 C -0.09 -2.13 9.90 71.24 0.71 -1.42 16 21 H 0.04 1.66 6.44 -2.39 -0.02 1.64 16 22 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.07 3.94 5.30 -2.39 -0.01 3.92 16 25 H 0.02 1.03 7.86 -2.39 -0.02 1.02 16 26 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 28 H 0.03 1.27 7.87 -2.39 -0.02 1.25 16 29 H 0.08 3.07 6.44 -2.39 -0.02 3.05 16 30 H 0.09 3.36 7.66 -2.39 -0.02 3.34 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 34 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.67 7.73 -2.38 -0.02 1.65 16 37 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -64.04 307.81 5.61 -58.43 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.03 Total: 14.10 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 5.83 Total: -6.21 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -3.28 Total: -111.42 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.04 5.61 -58.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068815598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.964 kcal (2) G-P(sol) polarization free energy of solvation -64.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds