Wall clock time and date at job start Sun Mar 29 2020 21:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48492 * 109.47068 * 269.99859 * 3 2 1 5 5 H 1.48500 * 109.46772 * 29.99892 * 3 2 1 6 6 H 1.48501 * 109.47044 * 149.99479 * 3 2 1 7 7 C 1.37881 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99624 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00197 * 180.02562 * 7 2 1 10 10 N 1.46894 * 109.47500 * 179.61628 * 9 7 2 11 11 C 1.46895 * 111.00311 * 285.63865 * 10 9 7 12 12 C 1.53005 * 109.47104 * 74.64306 * 11 10 9 13 13 C 1.53004 * 117.49891 * 247.44721 * 12 11 10 14 14 C 1.53001 * 117.49930 * 178.78842 * 12 11 10 15 15 C 1.46903 * 111.00403 * 161.68070 * 10 9 7 16 16 C 1.53001 * 109.47224 * 298.95841 * 15 10 9 17 17 C 1.52994 * 109.47119 * 179.97438 * 16 15 10 18 18 C 1.53004 * 109.47420 * 300.00095 * 17 16 15 19 19 C 1.53000 * 109.46695 * 59.99766 * 18 17 16 20 20 C 1.52988 * 109.47522 * 299.99981 * 19 18 17 21 21 H 0.97000 * 120.00492 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46814 * 59.61641 * 9 7 2 23 23 H 1.09000 * 109.46991 * 299.62282 * 9 7 2 24 24 H 1.09002 * 109.47368 * 194.63917 * 11 10 9 25 25 H 1.08995 * 109.47369 * 314.64477 * 11 10 9 26 26 H 1.08998 * 115.54830 * 33.11513 * 12 11 10 27 27 H 1.08995 * 117.49583 * 359.97438 * 13 12 11 28 28 H 1.09004 * 117.49631 * 145.01949 * 13 12 11 29 29 H 1.09003 * 117.49731 * 214.98289 * 14 12 11 30 30 H 1.08994 * 117.50091 * 359.97438 * 14 12 11 31 31 H 1.08996 * 109.47143 * 178.95483 * 15 10 9 32 32 H 1.09007 * 109.46921 * 59.99532 * 16 15 10 33 33 H 1.08997 * 109.47267 * 299.99922 * 16 15 10 34 34 H 1.09007 * 109.47073 * 60.00278 * 17 16 15 35 35 H 1.08998 * 109.47273 * 180.02562 * 17 16 15 36 36 H 1.09005 * 109.46980 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47258 * 300.00159 * 18 17 16 38 38 H 1.09006 * 109.46824 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.47020 * 60.00294 * 19 18 17 40 40 H 1.09007 * 109.47229 * 300.00186 * 20 19 18 41 41 H 1.08998 * 109.47417 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5790 0.0109 11 6 3.8277 -3.1895 1.3357 12 6 2.3509 -3.5257 1.5528 13 6 1.5963 -2.7351 2.6236 14 6 1.9663 -4.1996 2.8715 15 6 5.4043 -2.6444 -0.4192 16 6 5.5247 -2.1143 -1.8494 17 6 6.9861 -2.1818 -2.2970 18 6 7.8457 -1.3280 -1.3626 19 6 7.7253 -1.8582 0.0675 20 6 6.2640 -1.7906 0.5152 21 1 -0.4851 0.8400 -0.0004 22 1 3.8744 -0.6741 0.8877 23 1 3.8752 -0.6864 -0.8922 24 1 4.4206 -4.1021 1.3957 25 1 4.1578 -2.4904 2.1040 26 1 1.7986 -3.8164 0.6592 27 1 2.1521 -1.9757 3.1736 28 1 0.5476 -2.5060 2.4345 29 1 1.1607 -4.9335 2.8454 30 1 2.7653 -4.4038 3.5841 31 1 5.7470 -3.6785 -0.3849 32 1 5.1819 -1.0801 -1.8835 33 1 4.9120 -2.7222 -2.5150 34 1 7.3292 -3.2159 -2.2628 35 1 7.0719 -1.8037 -3.3157 36 1 8.8870 -1.3765 -1.6813 37 1 7.5027 -0.2940 -1.3968 38 1 8.3381 -1.2503 0.7332 39 1 8.0684 -2.8923 0.1018 40 1 5.9209 -0.7565 0.4810 41 1 6.1783 -2.1679 1.5342 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069079567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:07 Heat of formation + Delta-G solvation = -1.666939 kcal Electronic energy + Delta-G solvation = -18086.969984 eV Core-core repulsion = 15580.246926 eV Total energy + Delta-G solvation = -2506.723058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50494 -38.27341 -36.02297 -34.44777 -31.67563 -30.65382 -29.64414 -26.38591 -23.99897 -23.49412 -23.06374 -21.89981 -21.14542 -20.04433 -18.76248 -16.84687 -16.72481 -16.12730 -15.64690 -15.26027 -15.23645 -15.05814 -14.71199 -14.52747 -14.18853 -13.46821 -13.25397 -13.12221 -13.01004 -12.73949 -12.49635 -12.25385 -12.14990 -11.97673 -11.79809 -11.70936 -11.40677 -11.26511 -11.17842 -11.06782 -10.71326 -10.69849 -10.37471 -8.87955 -8.15384 -6.11618 1.30536 1.32863 1.40832 2.38377 3.02641 3.17162 3.33940 3.81181 3.90326 4.06263 4.10670 4.20917 4.31564 4.37125 4.43816 4.53262 4.62432 4.64699 4.67586 4.70827 4.79077 4.84326 4.87494 4.99705 5.03860 5.09782 5.16525 5.23599 5.27408 5.29299 5.29826 5.38749 5.40931 5.47205 5.56882 5.60941 5.71434 6.15435 6.53484 6.79710 6.96245 7.48209 9.00123 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.010157 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.566484 B = 2756.131587 C = 3780.884864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.012 3.988 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.484 4.484 8 H 0.062 0.938 9 C 0.175 3.825 10 N -0.537 5.537 11 C 0.106 3.894 12 C -0.123 4.123 13 C -0.168 4.168 14 C -0.166 4.166 15 C 0.086 3.914 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.120 4.120 19 C -0.107 4.107 20 C -0.150 4.150 21 H 0.259 0.741 22 H -0.022 1.022 23 H 0.023 0.977 24 H 0.085 0.915 25 H 0.021 0.979 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.842 -5.918 1.123 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.747 3.253 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.048 3.952 10 N -0.260 5.260 11 C -0.022 4.022 12 C -0.142 4.142 13 C -0.206 4.206 14 C -0.203 4.203 15 C -0.023 4.023 16 C -0.152 4.152 17 C -0.147 4.147 18 C -0.157 4.157 19 C -0.145 4.145 20 C -0.189 4.189 21 H 0.068 0.932 22 H -0.005 1.005 23 H 0.041 0.959 24 H 0.103 0.897 25 H 0.039 0.961 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.414 -6.074 0.783 16.586 hybrid contribution -0.172 1.824 0.538 1.910 sum 15.242 -4.249 1.322 15.878 Atomic orbital electron populations 1.70020 1.07562 1.27059 1.54410 1.25564 0.95262 1.01737 0.95842 0.86112 0.79509 0.80990 0.78734 1.19681 1.21383 1.18390 1.21470 0.90736 0.93648 1.46372 0.91975 1.19963 0.94612 0.86455 0.94176 1.62033 1.17953 1.19199 1.26783 1.21457 0.93963 0.97732 0.89028 1.21983 0.96288 1.03596 0.92293 1.22561 0.99815 0.94226 1.03950 1.23153 1.03525 0.94561 0.99089 1.21837 0.86381 0.99458 0.94582 1.21623 0.97613 1.00271 0.95652 1.21487 0.93113 1.01054 0.99040 1.21564 1.00397 0.98811 0.94944 1.21446 0.94390 1.02136 0.96568 1.22223 0.97370 0.99747 0.99573 0.93157 1.00486 0.95927 0.89696 0.96101 0.90256 0.90695 0.92029 0.88367 0.87333 0.89220 0.94025 0.92273 0.90526 0.91271 0.89997 0.93569 0.91629 0.90491 0.94461 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.92 45.24 27.48 68.60 1.88 47.12 16 4 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.26 -12.19 6.53 99.48 0.65 -11.54 16 7 C -0.48 -27.21 7.81 25.60 0.20 -27.01 16 8 H 0.06 3.82 5.44 -2.91 -0.02 3.80 16 9 C 0.17 8.34 2.65 85.56 0.23 8.57 16 10 N -0.54 -21.60 4.46 -875.54 -3.90 -25.50 16 11 C 0.11 3.87 4.45 86.31 0.38 4.26 16 12 C -0.12 -4.87 3.85 -10.79 -0.04 -4.91 16 13 C -0.17 -6.95 9.06 30.62 0.28 -6.67 16 14 C -0.17 -5.28 10.25 30.62 0.31 -4.96 16 15 C 0.09 2.72 2.20 44.92 0.10 2.81 16 16 C -0.11 -3.51 5.06 30.59 0.15 -3.35 16 17 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 18 C -0.12 -2.53 5.92 30.60 0.18 -2.35 16 19 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 20 C -0.15 -4.39 4.58 30.59 0.14 -4.25 16 21 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 22 H -0.02 -1.11 6.04 -2.39 -0.01 -1.13 16 23 H 0.02 1.10 5.07 -2.39 -0.01 1.09 16 24 H 0.08 2.58 7.83 -2.39 -0.02 2.56 16 25 H 0.02 0.79 6.82 -2.39 -0.02 0.77 16 26 H 0.08 3.63 7.03 -2.39 -0.02 3.61 16 27 H 0.07 3.12 8.04 -2.39 -0.02 3.10 16 28 H 0.06 2.89 8.14 -2.38 -0.02 2.87 16 29 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.09 2.51 7.96 -2.39 -0.02 2.49 16 32 H 0.04 1.49 6.09 -2.38 -0.01 1.47 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.04 1.29 6.82 -2.38 -0.02 1.27 16 41 H 0.06 1.68 6.97 -2.39 -0.02 1.66 16 Total: -1.00 -63.79 303.63 1.96 -61.82 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.92 Total: 16.67 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 2.76 Total: -41.13 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -3.60 Total: -84.49 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -63.79 1.96 -61.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069079567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.157 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds