Wall clock time and date at job start Sun Mar 29 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99541 * 2 1 4 4 H 1.48498 * 109.47200 * 269.99866 * 3 2 1 5 5 H 1.48494 * 109.47545 * 30.00062 * 3 2 1 6 6 H 1.48502 * 109.47089 * 150.00405 * 3 2 1 7 7 C 1.37879 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00022 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47120 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47273 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99730 * 66.04332 * 12 11 10 14 14 C 1.53002 * 109.47204 * 195.85670 * 13 12 11 15 15 C 1.53001 * 117.49938 * 244.09483 * 14 13 12 16 16 C 1.53003 * 117.49797 * 175.43911 * 14 13 12 17 17 C 1.46900 * 111.00461 * 189.99720 * 12 11 10 18 18 C 1.53002 * 109.46882 * 74.79477 * 17 12 11 19 19 C 1.52993 * 117.50055 * 245.07946 * 18 17 12 20 20 C 1.52998 * 117.50086 * 176.42011 * 18 17 12 21 21 H 0.96991 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47080 * 60.00562 * 9 7 2 23 23 H 1.09001 * 109.47196 * 300.00442 * 9 7 2 24 24 H 1.08997 * 109.46805 * 300.00174 * 10 9 7 25 25 H 1.08992 * 109.46979 * 59.99987 * 10 9 7 26 26 H 1.09001 * 109.47042 * 300.00153 * 11 10 9 27 27 H 1.09004 * 109.47031 * 59.99805 * 11 10 9 28 28 H 1.08997 * 109.47590 * 315.86395 * 13 12 11 29 29 H 1.09008 * 109.47025 * 75.85849 * 13 12 11 30 30 H 1.08999 * 115.54963 * 29.76439 * 14 13 12 31 31 H 1.09005 * 117.49683 * 0.02562 * 15 14 13 32 32 H 1.08999 * 117.49888 * 145.01934 * 15 14 13 33 33 H 1.09001 * 117.49584 * 214.98480 * 16 14 13 34 34 H 1.08998 * 117.49746 * 359.97313 * 16 14 13 35 35 H 1.09001 * 109.47539 * 194.79643 * 17 12 11 36 36 H 1.09001 * 109.47164 * 314.79991 * 17 12 11 37 37 H 1.09009 * 115.54909 * 30.74934 * 18 17 12 38 38 H 1.09003 * 117.50089 * 0.02562 * 19 18 17 39 39 H 1.09006 * 117.49809 * 145.02021 * 19 18 17 40 40 H 1.08998 * 117.49812 * 214.98574 * 20 18 17 41 41 H 1.09006 * 117.49463 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6364 0.0001 12 7 6.0414 -4.0213 0.0009 13 6 5.6919 -4.7039 -1.2521 14 6 5.8532 -6.2147 -1.0720 15 6 6.9174 -6.9173 -1.9176 16 6 5.4333 -7.1138 -2.2366 17 6 7.4902 -4.0673 0.2390 18 6 7.7734 -3.7856 1.7160 19 6 8.5434 -2.5082 2.0565 20 6 9.2270 -3.8716 2.1855 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6796 0.8895 23 1 3.8745 -0.6807 -0.8905 24 1 3.6586 -3.1501 0.8903 25 1 3.6580 -3.1505 -0.8896 26 1 5.9149 -2.1226 -0.8899 27 1 5.9149 -2.1224 0.8901 28 1 4.6582 -4.4774 -1.5132 29 1 6.3515 -4.3605 -2.0491 30 1 5.6856 -6.5883 -0.0619 31 1 7.5028 -6.3031 -2.6018 32 1 7.4495 -7.7533 -1.4638 33 1 4.9895 -8.0790 -1.9926 34 1 5.0416 -6.6290 -3.1308 35 1 7.8702 -5.0551 -0.0218 36 1 7.9835 -3.3143 -0.3755 37 1 6.9995 -4.1077 2.4128 38 1 8.8478 -1.8681 1.2284 39 1 8.2763 -1.9900 2.9776 40 1 9.4095 -4.2499 3.1913 41 1 9.9816 -4.1292 1.4422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070505327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:42 Heat of formation + Delta-G solvation = 36.976296 kcal Electronic energy + Delta-G solvation = -16857.935272 eV Core-core repulsion = 14352.887911 eV Total energy + Delta-G solvation = -2505.047362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.85821 -37.18011 -35.73930 -33.46325 -31.47314 -27.81693 -27.51574 -24.29314 -22.46423 -22.37613 -21.69810 -20.49937 -20.14909 -19.80537 -16.68665 -16.23366 -15.69642 -14.97989 -14.72531 -14.21269 -14.13312 -13.81343 -13.74031 -12.80860 -12.61705 -12.30833 -11.88409 -11.69196 -11.57447 -11.55277 -11.33723 -11.13490 -10.89618 -10.75271 -10.42911 -10.24002 -10.03365 -9.91595 -9.81445 -9.51706 -9.46610 -9.11223 -8.49671 -8.10210 -6.00186 -3.97516 3.32875 3.40228 3.44477 3.70377 3.80503 4.07190 4.48764 4.69522 4.84676 4.90064 4.91882 4.97735 5.13644 5.33766 5.36732 5.42766 5.53084 5.57114 5.57459 5.66823 5.68014 5.74491 5.84140 5.86945 6.00816 6.02159 6.06561 6.08034 6.23338 6.30183 6.32708 6.62740 6.65460 6.97068 7.32495 7.34734 7.44728 7.52347 7.85074 8.59709 9.05803 9.62762 11.13499 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019314 B = 0.005798 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.389060 B = 4828.163634 C = 6015.754742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.098 4.098 11 C 0.054 3.946 12 N -0.533 5.533 13 C 0.080 3.920 14 C -0.138 4.138 15 C -0.189 4.189 16 C -0.179 4.179 17 C 0.086 3.914 18 C -0.139 4.139 19 C -0.184 4.184 20 C -0.182 4.182 21 H 0.262 0.738 22 H 0.015 0.985 23 H 0.008 0.992 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.825 -10.525 -0.591 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.073 4.073 12 N -0.256 5.256 13 C -0.048 4.048 14 C -0.156 4.156 15 C -0.226 4.226 16 C -0.217 4.217 17 C -0.042 4.042 18 C -0.157 4.157 19 C -0.221 4.221 20 C -0.220 4.220 21 H 0.072 0.928 22 H 0.033 0.967 23 H 0.026 0.974 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.438 -10.644 -0.210 20.431 hybrid contribution 0.768 1.387 -0.681 1.726 sum 18.207 -9.256 -0.891 20.444 Atomic orbital electron populations 1.69918 1.06290 1.26782 1.51487 1.25037 0.94712 0.99124 0.94691 0.86781 0.80400 0.83709 0.78413 1.20412 1.21428 1.19021 1.21158 0.89548 0.94424 1.50352 0.91029 1.19551 0.97114 0.92434 0.96014 1.21494 0.91122 0.99375 1.01554 1.22327 0.97802 0.86962 1.00198 1.61930 1.12484 1.17038 1.34194 1.21756 1.01851 0.91121 0.90073 1.22328 1.02902 0.93706 0.96703 1.23056 0.92013 1.03457 1.04076 1.22943 0.97284 1.01327 1.00132 1.21655 0.88637 1.00601 0.93337 1.22319 0.94393 1.01363 0.97663 1.23050 1.04874 0.90921 1.03296 1.22930 0.95694 1.01106 1.02265 0.92819 0.96663 0.97417 0.91975 0.92920 0.95664 0.90865 0.89264 0.95142 0.87011 0.89295 0.89186 0.88871 0.88863 0.90569 0.95151 0.86923 0.89155 0.88900 0.88983 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -1.98 5.12 -26.73 -0.14 -2.12 16 11 C 0.05 0.91 4.79 -3.83 -0.02 0.89 16 12 N -0.53 -7.74 4.40 -234.62 -1.03 -8.77 16 13 C 0.08 1.08 5.11 -3.82 -0.02 1.06 16 14 C -0.14 -1.61 4.97 -90.62 -0.45 -2.07 16 15 C -0.19 -1.87 9.99 -26.70 -0.27 -2.13 16 16 C -0.18 -1.86 10.25 -26.69 -0.27 -2.14 16 17 C 0.09 1.06 5.10 -3.82 -0.02 1.04 16 18 C -0.14 -1.65 5.14 -90.62 -0.47 -2.11 16 19 C -0.18 -2.04 10.18 -26.70 -0.27 -2.31 16 20 C -0.18 -1.80 10.25 -26.70 -0.27 -2.07 16 21 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 22 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 23 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.05 1.07 6.28 -51.93 -0.33 0.74 16 26 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.07 1.23 7.40 -51.93 -0.38 0.85 16 28 H 0.09 1.35 5.94 -51.93 -0.31 1.04 16 29 H 0.03 0.40 7.79 -51.92 -0.40 0.00 16 30 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 0.85 8.03 -51.93 -0.42 0.44 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.88 6.97 -51.93 -0.36 0.52 16 36 H 0.03 0.38 7.75 -51.93 -0.40 -0.02 16 37 H 0.11 1.46 8.14 -51.92 -0.42 1.04 16 38 H 0.09 0.99 8.04 -51.93 -0.42 0.58 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -30.16 327.35 -10.34 -40.49 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.60 Total: -0.55 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -2.74 Total: -25.92 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.26 Total: -36.39 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.16 -10.34 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070505327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.469 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds