Wall clock time and date at job start Sun Mar 29 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99541 * 2 1 4 4 H 1.48498 * 109.47200 * 269.99866 * 3 2 1 5 5 H 1.48494 * 109.47545 * 30.00062 * 3 2 1 6 6 H 1.48502 * 109.47089 * 150.00405 * 3 2 1 7 7 C 1.37879 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00022 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47120 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47273 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99730 * 66.04332 * 12 11 10 14 14 C 1.53002 * 109.47204 * 195.85670 * 13 12 11 15 15 C 1.53001 * 117.49938 * 244.09483 * 14 13 12 16 16 C 1.53003 * 117.49797 * 175.43911 * 14 13 12 17 17 C 1.46900 * 111.00461 * 189.99720 * 12 11 10 18 18 C 1.53002 * 109.46882 * 74.79477 * 17 12 11 19 19 C 1.52993 * 117.50055 * 245.07946 * 18 17 12 20 20 C 1.52998 * 117.50086 * 176.42011 * 18 17 12 21 21 H 0.96991 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47080 * 60.00562 * 9 7 2 23 23 H 1.09001 * 109.47196 * 300.00442 * 9 7 2 24 24 H 1.08997 * 109.46805 * 300.00174 * 10 9 7 25 25 H 1.08992 * 109.46979 * 59.99987 * 10 9 7 26 26 H 1.09001 * 109.47042 * 300.00153 * 11 10 9 27 27 H 1.09004 * 109.47031 * 59.99805 * 11 10 9 28 28 H 1.08997 * 109.47590 * 315.86395 * 13 12 11 29 29 H 1.09008 * 109.47025 * 75.85849 * 13 12 11 30 30 H 1.08999 * 115.54963 * 29.76439 * 14 13 12 31 31 H 1.09005 * 117.49683 * 0.02562 * 15 14 13 32 32 H 1.08999 * 117.49888 * 145.01934 * 15 14 13 33 33 H 1.09001 * 117.49584 * 214.98480 * 16 14 13 34 34 H 1.08998 * 117.49746 * 359.97313 * 16 14 13 35 35 H 1.09001 * 109.47539 * 194.79643 * 17 12 11 36 36 H 1.09001 * 109.47164 * 314.79991 * 17 12 11 37 37 H 1.09009 * 115.54909 * 30.74934 * 18 17 12 38 38 H 1.09003 * 117.50089 * 0.02562 * 19 18 17 39 39 H 1.09006 * 117.49809 * 145.02021 * 19 18 17 40 40 H 1.08998 * 117.49812 * 214.98574 * 20 18 17 41 41 H 1.09006 * 117.49463 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6364 0.0001 12 7 6.0414 -4.0213 0.0009 13 6 5.6919 -4.7039 -1.2521 14 6 5.8532 -6.2147 -1.0720 15 6 6.9174 -6.9173 -1.9176 16 6 5.4333 -7.1138 -2.2366 17 6 7.4902 -4.0673 0.2390 18 6 7.7734 -3.7856 1.7160 19 6 8.5434 -2.5082 2.0565 20 6 9.2270 -3.8716 2.1855 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6796 0.8895 23 1 3.8745 -0.6807 -0.8905 24 1 3.6586 -3.1501 0.8903 25 1 3.6580 -3.1505 -0.8896 26 1 5.9149 -2.1226 -0.8899 27 1 5.9149 -2.1224 0.8901 28 1 4.6582 -4.4774 -1.5132 29 1 6.3515 -4.3605 -2.0491 30 1 5.6856 -6.5883 -0.0619 31 1 7.5028 -6.3031 -2.6018 32 1 7.4495 -7.7533 -1.4638 33 1 4.9895 -8.0790 -1.9926 34 1 5.0416 -6.6290 -3.1308 35 1 7.8702 -5.0551 -0.0218 36 1 7.9835 -3.3143 -0.3755 37 1 6.9995 -4.1077 2.4128 38 1 8.8478 -1.8681 1.2284 39 1 8.2763 -1.9900 2.9776 40 1 9.4095 -4.2499 3.1913 41 1 9.9816 -4.1292 1.4422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070505327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:42 Heat of formation + Delta-G solvation = 20.563599 kcal Electronic energy + Delta-G solvation = -16858.646980 eV Core-core repulsion = 14352.887911 eV Total energy + Delta-G solvation = -2505.759070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90808 -38.03656 -36.95064 -35.34228 -33.41236 -29.29568 -28.75890 -25.83487 -23.34993 -23.18925 -23.11458 -21.78696 -21.25742 -21.06876 -18.88862 -17.24512 -16.80064 -16.25943 -16.08825 -15.60633 -15.45483 -15.12376 -14.72924 -14.64171 -13.90536 -13.60076 -13.46569 -13.29259 -12.76383 -12.50417 -12.35445 -12.33771 -12.25582 -12.06926 -11.80359 -11.60339 -11.49815 -11.31449 -11.18474 -11.09020 -10.78414 -10.73939 -10.59892 -9.24699 -8.29206 -6.33372 1.35145 1.37516 1.49900 2.36457 2.75438 2.95544 3.05966 3.08104 3.80933 3.93658 4.03684 4.05008 4.11441 4.18641 4.21124 4.38732 4.39564 4.50552 4.59793 4.69645 4.75598 4.80607 4.81455 4.85915 4.90731 4.96499 5.00634 5.05748 5.07095 5.14103 5.28786 5.29038 5.36330 5.40733 5.53889 5.61253 5.66926 6.16457 6.26610 6.31261 6.74747 7.31144 8.87960 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019314 B = 0.005798 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.389060 B = 4828.163634 C = 6015.754742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.087 4.087 11 C 0.068 3.932 12 N -0.541 5.541 13 C 0.082 3.918 14 C -0.152 4.152 15 C -0.170 4.170 16 C -0.181 4.181 17 C 0.092 3.908 18 C -0.155 4.155 19 C -0.191 4.191 20 C -0.162 4.162 21 H 0.266 0.734 22 H 0.020 0.980 23 H 0.017 0.983 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.033 0.967 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.778 -10.271 -0.811 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.570 4.570 8 H 0.047 0.953 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.060 4.060 12 N -0.265 5.265 13 C -0.046 4.046 14 C -0.171 4.171 15 C -0.207 4.207 16 C -0.218 4.218 17 C -0.036 4.036 18 C -0.174 4.174 19 C -0.228 4.228 20 C -0.199 4.199 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.035 0.965 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.410 -10.414 -0.431 22.917 hybrid contribution -0.228 1.204 -0.609 1.368 sum 20.182 -9.210 -1.039 22.209 Atomic orbital electron populations 1.70076 1.08359 1.28174 1.52789 1.26053 0.95637 1.03618 0.94072 0.85622 0.79521 0.78047 0.79251 1.19078 1.20851 1.16941 1.21501 0.92218 0.93025 1.50293 0.95316 1.19484 0.93818 0.95028 0.96352 1.21305 0.93998 0.96699 1.00542 1.22040 0.94815 0.88650 1.00456 1.61881 1.14264 1.15462 1.34843 1.21714 1.00565 0.92441 0.89878 1.22178 1.05486 0.92565 0.96868 1.23113 0.91585 1.03169 1.02826 1.23027 0.98180 1.01290 0.99306 1.21658 0.86865 1.01306 0.93755 1.22246 0.95473 1.02685 0.97017 1.23102 1.05057 0.91233 1.03365 1.23007 0.94301 0.99543 1.03089 0.92493 0.96201 0.96505 0.93520 0.93555 0.95250 0.90663 0.91598 0.94453 0.87873 0.88674 0.87701 0.87951 0.89010 0.89433 0.94895 0.88489 0.88990 0.88963 0.87933 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 45.13 27.47 68.60 1.88 47.02 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 7 C -0.53 -31.84 9.66 25.60 0.25 -31.60 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.09 -3.60 5.12 30.59 0.16 -3.44 16 11 C 0.07 2.23 4.79 86.30 0.41 2.64 16 12 N -0.54 -15.25 4.40 -896.21 -3.94 -19.20 16 13 C 0.08 2.17 5.11 86.30 0.44 2.61 16 14 C -0.15 -3.41 4.97 -10.79 -0.05 -3.46 16 15 C -0.17 -2.94 9.99 30.62 0.31 -2.64 16 16 C -0.18 -3.50 10.25 30.62 0.31 -3.18 16 17 C 0.09 2.10 5.10 86.30 0.44 2.54 16 18 C -0.16 -3.43 5.14 -10.80 -0.06 -3.48 16 19 C -0.19 -3.83 10.18 30.61 0.31 -3.52 16 20 C -0.16 -2.75 10.25 30.62 0.31 -2.43 16 21 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 22 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 23 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 1.94 6.28 -2.39 -0.02 1.92 16 26 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 27 H 0.07 2.44 7.40 -2.38 -0.02 2.42 16 28 H 0.07 2.03 5.94 -2.39 -0.01 2.02 16 29 H 0.04 0.93 7.79 -2.38 -0.02 0.91 16 30 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.09 1.55 8.03 -2.38 -0.02 1.54 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.80 6.97 -2.39 -0.02 1.79 16 36 H 0.03 0.75 7.75 -2.39 -0.02 0.73 16 37 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.09 1.81 8.04 -2.39 -0.02 1.80 16 39 H 0.09 1.84 8.14 -2.38 -0.02 1.83 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -65.71 327.35 2.56 -63.14 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.90 Total: 15.64 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 3.42 Total: -45.66 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -3.64 Total: -80.14 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -65.71 2.56 -63.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070505327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.706 kcal (2) G-P(sol) polarization free energy of solvation -65.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds