Wall clock time and date at job start Sun Mar 29 2020 21:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 C 1.52997 * 109.47317 * 240.00091 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53002 * 109.46817 * 179.97438 * 4 2 1 7 7 N 1.46899 * 109.47254 * 59.99645 * 4 2 1 8 8 C 1.46897 * 111.00355 * 204.99848 * 7 4 2 9 9 C 1.52994 * 109.47637 * 180.02562 * 8 7 4 10 10 C 1.50698 * 109.47254 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00321 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99675 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00200 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99561 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47128 * 60.00187 * 14 12 10 16 16 H 1.48508 * 109.47187 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47584 * 299.99856 * 14 12 10 18 18 N 1.46500 * 109.46944 * 119.99651 * 2 1 3 19 19 C 1.34944 * 126.03669 * 34.72323 * 18 2 1 20 20 C 1.35323 * 107.74482 * 179.83861 * 19 18 2 21 21 C 1.39873 * 107.91958 * 0.41777 * 20 19 18 22 22 N 1.30842 * 108.20046 * 359.74273 * 21 20 19 23 23 H 1.09000 * 109.47486 * 299.99918 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00641 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47407 * 60.00219 * 6 4 2 27 27 H 1.09000 * 109.46986 * 179.97438 * 6 4 2 28 28 H 1.09002 * 109.47075 * 299.99262 * 6 4 2 29 29 H 1.00898 * 111.00393 * 328.95803 * 7 4 2 30 30 H 1.09006 * 109.46948 * 300.00869 * 8 7 4 31 31 H 1.09006 * 109.47033 * 59.99701 * 8 7 4 32 32 H 1.09008 * 109.47073 * 300.00564 * 9 8 7 33 33 H 1.08997 * 109.47237 * 59.99919 * 9 8 7 34 34 H 0.96999 * 120.00222 * 180.02562 * 13 12 10 35 35 H 1.07999 * 126.13049 * 359.97438 * 19 18 2 36 36 H 1.08003 * 126.04072 * 180.16194 * 20 19 18 37 37 H 1.07999 * 125.90008 * 179.71671 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6768 -1.7489 -1.2492 6 6 3.5701 -0.7206 -1.2494 7 7 1.5503 -0.0288 -2.4487 8 6 1.4876 -0.9438 -3.5961 9 6 0.9750 -0.1882 -4.8237 10 6 0.9102 -1.1271 -6.0007 11 1 1.2054 -2.1594 -5.8848 12 6 0.4748 -0.6678 -7.2257 13 7 0.1157 0.5894 -7.3669 14 14 0.3951 -1.8315 -8.6847 15 1 -0.5273 -2.9530 -8.3736 16 1 -0.1026 -1.0981 -9.8763 17 1 1.7510 -2.3687 -8.9643 18 7 2.0183 -0.6905 1.1962 19 6 1.4373 -1.7525 1.7926 20 6 2.1966 -2.0927 2.8598 21 6 3.2735 -1.2023 2.9231 22 7 3.1676 -0.3613 1.9264 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.9338 -1.2342 -0.3595 27 1 3.9335 -1.2348 -2.1392 28 1 3.9330 0.3072 -1.2497 29 1 0.6527 0.3992 -2.2780 30 1 2.4831 -1.3376 -3.8017 31 1 0.8113 -1.7675 -3.3675 32 1 -0.0203 0.2059 -4.6184 33 1 1.6517 0.6352 -5.0522 34 1 -0.1909 0.9124 -8.2286 35 1 0.5301 -2.2444 1.4739 36 1 2.0029 -2.9053 3.5444 37 1 4.0568 -1.2077 3.6666 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071882134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:30 Heat of formation + Delta-G solvation = 69.126957 kcal Electronic energy + Delta-G solvation = -16641.286267 eV Core-core repulsion = 14034.092719 eV Total energy + Delta-G solvation = -2607.193548 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27924 -37.73855 -34.34667 -32.73818 -30.70401 -29.92785 -29.51525 -27.94806 -24.47980 -23.84978 -21.46461 -21.16550 -20.53281 -19.61344 -17.24008 -16.44747 -16.07876 -15.02030 -14.58644 -14.47787 -14.08921 -13.65404 -13.55397 -13.34317 -12.88083 -12.69527 -12.40958 -12.21280 -11.81334 -11.57108 -11.38301 -11.08394 -10.98807 -10.81193 -10.69397 -10.56565 -10.01734 -9.52523 -9.36195 -9.19360 -8.61568 -8.38536 -7.95820 -6.02865 -4.05792 1.88254 2.43132 2.81460 3.31450 3.36025 3.38298 4.34806 4.39601 4.58812 4.67911 4.79122 4.93091 4.96000 5.30677 5.33172 5.37363 5.52324 5.62136 5.65513 5.74428 5.89745 5.95484 6.04076 6.13523 6.24389 6.34759 6.49591 6.61756 6.92185 6.99357 7.36574 7.65186 7.70110 7.75053 7.87129 8.02859 8.39038 9.00996 9.58195 11.08491 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053237 B = 0.004152 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.828033 B = 6742.113625 C = 6814.506319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.155 3.845 3 H 0.110 0.890 4 C 0.075 3.925 5 H 0.043 0.957 6 C -0.134 4.134 7 N -0.682 5.682 8 C 0.068 3.932 9 C 0.026 3.974 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.355 5.355 19 C 0.055 3.945 20 C -0.281 4.281 21 C 0.036 3.964 22 N -0.291 5.291 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.336 0.664 30 H 0.060 0.940 31 H 0.016 0.984 32 H 0.013 0.987 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.169 0.831 36 H 0.143 0.857 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -3.548 18.629 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.052 3.948 3 H 0.128 0.872 4 C -0.036 4.036 5 H 0.061 0.939 6 C -0.192 4.192 7 N -0.317 5.317 8 C -0.060 4.060 9 C -0.012 4.012 10 C -0.563 4.563 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 N -0.138 5.138 19 C -0.092 4.092 20 C -0.310 4.310 21 C -0.150 4.150 22 N -0.112 5.112 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.156 0.844 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.186 0.814 36 H 0.161 0.839 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.466 -2.083 17.601 17.894 hybrid contribution -1.252 -1.956 -0.226 2.333 sum 1.214 -4.039 17.374 17.879 Atomic orbital electron populations 1.22270 0.93050 1.03459 1.04062 1.21499 0.94279 0.97768 0.81217 0.87172 1.21852 0.97077 0.95790 0.88845 0.93936 1.21721 0.93894 1.02552 1.01020 1.60741 1.33354 1.34169 1.03395 1.22225 0.99821 0.93395 0.90601 1.19065 0.96210 0.95857 0.90021 1.21121 1.44234 0.96303 0.94592 0.92820 1.24994 0.95336 0.95105 0.98830 1.69955 1.44291 1.14338 1.24616 0.86644 0.78450 0.80864 0.81948 1.20288 1.21230 1.20190 1.48833 1.18948 1.23960 1.22036 1.22493 0.99912 0.91481 0.95327 1.21461 0.99474 1.06599 1.03510 1.23854 0.99370 0.94283 0.97446 1.77400 1.02842 1.23787 1.07209 0.91233 0.89176 0.91582 0.92978 0.92428 0.91910 0.84408 0.92151 0.96556 0.96821 0.95539 0.92884 0.81405 0.83879 0.80360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 8.59 37.16 0.32 -1.38 16 2 C 0.15 1.91 3.04 -67.93 -0.21 1.70 16 3 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.08 1.10 2.42 -67.71 -0.16 0.93 16 5 H 0.04 0.64 7.80 -51.93 -0.40 0.24 16 6 C -0.13 -2.04 9.23 37.16 0.34 -1.69 16 7 N -0.68 -11.63 6.31 -106.73 -0.67 -12.31 16 8 C 0.07 1.39 5.42 -3.83 -0.02 1.37 16 9 C 0.03 0.66 5.23 -27.89 -0.15 0.52 16 10 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 14 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 N -0.36 -4.48 2.89 -54.86 -0.16 -4.64 16 19 C 0.05 0.60 10.59 -17.22 -0.18 0.41 16 20 C -0.28 -2.90 10.80 -40.01 -0.43 -3.34 16 21 C 0.04 0.41 12.03 -17.36 -0.21 0.20 16 22 N -0.29 -4.00 11.91 30.63 0.36 -3.63 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 0.91 6.21 -51.93 -0.32 0.59 16 25 H 0.07 0.61 7.15 -51.93 -0.37 0.24 16 26 H 0.05 0.78 7.04 -51.93 -0.37 0.41 16 27 H 0.06 0.92 7.45 -51.93 -0.39 0.53 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.34 5.28 6.17 -39.29 -0.24 5.04 16 30 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 31 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 32 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.17 1.39 7.25 -52.49 -0.38 1.01 16 36 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 304.62 15.07 4.59 4.59 Total: -1.00 -31.18 304.62 -7.05 -38.23 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.78 Total: 1.96 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -1.11 Total: -14.76 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.27 Total: -46.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.18 -7.05 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071882134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.359 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds