Wall clock time and date at job start Sun Mar 29 2020 21:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 C 1.52997 * 109.47317 * 240.00091 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53002 * 109.46817 * 179.97438 * 4 2 1 7 7 N 1.46899 * 109.47254 * 59.99645 * 4 2 1 8 8 C 1.46897 * 111.00355 * 204.99848 * 7 4 2 9 9 C 1.52994 * 109.47637 * 180.02562 * 8 7 4 10 10 C 1.50698 * 109.47254 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00321 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99675 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00200 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99561 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47128 * 60.00187 * 14 12 10 16 16 H 1.48508 * 109.47187 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47584 * 299.99856 * 14 12 10 18 18 N 1.46500 * 109.46944 * 119.99651 * 2 1 3 19 19 C 1.34944 * 126.03669 * 34.72323 * 18 2 1 20 20 C 1.35323 * 107.74482 * 179.83861 * 19 18 2 21 21 C 1.39873 * 107.91958 * 0.41777 * 20 19 18 22 22 N 1.30842 * 108.20046 * 359.74273 * 21 20 19 23 23 H 1.09000 * 109.47486 * 299.99918 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00641 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47407 * 60.00219 * 6 4 2 27 27 H 1.09000 * 109.46986 * 179.97438 * 6 4 2 28 28 H 1.09002 * 109.47075 * 299.99262 * 6 4 2 29 29 H 1.00898 * 111.00393 * 328.95803 * 7 4 2 30 30 H 1.09006 * 109.46948 * 300.00869 * 8 7 4 31 31 H 1.09006 * 109.47033 * 59.99701 * 8 7 4 32 32 H 1.09008 * 109.47073 * 300.00564 * 9 8 7 33 33 H 1.08997 * 109.47237 * 59.99919 * 9 8 7 34 34 H 0.96999 * 120.00222 * 180.02562 * 13 12 10 35 35 H 1.07999 * 126.13049 * 359.97438 * 19 18 2 36 36 H 1.08003 * 126.04072 * 180.16194 * 20 19 18 37 37 H 1.07999 * 125.90008 * 179.71671 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6768 -1.7489 -1.2492 6 6 3.5701 -0.7206 -1.2494 7 7 1.5503 -0.0288 -2.4487 8 6 1.4876 -0.9438 -3.5961 9 6 0.9750 -0.1882 -4.8237 10 6 0.9102 -1.1271 -6.0007 11 1 1.2054 -2.1594 -5.8848 12 6 0.4748 -0.6678 -7.2257 13 7 0.1157 0.5894 -7.3669 14 14 0.3951 -1.8315 -8.6847 15 1 -0.5273 -2.9530 -8.3736 16 1 -0.1026 -1.0981 -9.8763 17 1 1.7510 -2.3687 -8.9643 18 7 2.0183 -0.6905 1.1962 19 6 1.4373 -1.7525 1.7926 20 6 2.1966 -2.0927 2.8598 21 6 3.2735 -1.2023 2.9231 22 7 3.1676 -0.3613 1.9264 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.9338 -1.2342 -0.3595 27 1 3.9335 -1.2348 -2.1392 28 1 3.9330 0.3072 -1.2497 29 1 0.6527 0.3992 -2.2780 30 1 2.4831 -1.3376 -3.8017 31 1 0.8113 -1.7675 -3.3675 32 1 -0.0203 0.2059 -4.6184 33 1 1.6517 0.6352 -5.0522 34 1 -0.1909 0.9124 -8.2286 35 1 0.5301 -2.2444 1.4739 36 1 2.0029 -2.9053 3.5444 37 1 4.0568 -1.2077 3.6666 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071882134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:29 Heat of formation + Delta-G solvation = 49.076560 kcal Electronic energy + Delta-G solvation = -16642.155717 eV Core-core repulsion = 14034.092719 eV Total energy + Delta-G solvation = -2608.062998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.14430 -38.97133 -35.94103 -34.48228 -32.15763 -30.88107 -30.45117 -29.54862 -26.19775 -25.00877 -22.81405 -22.31386 -21.84656 -20.59312 -18.53271 -18.12311 -17.46676 -16.48596 -16.00685 -15.78592 -15.21735 -14.82025 -14.73960 -14.39188 -14.33789 -13.96653 -13.58610 -13.38175 -13.28249 -12.89325 -12.86805 -12.72491 -12.43196 -12.34879 -12.09612 -11.76951 -11.55772 -11.40413 -11.29704 -10.56162 -10.33841 -9.49000 -9.37093 -8.20635 -6.32018 1.03004 1.40597 1.43418 1.51260 1.54991 2.01658 2.40409 3.13066 3.24741 3.43165 3.63391 3.96231 4.02572 4.12567 4.31135 4.34086 4.48552 4.58874 4.64263 4.71490 4.75390 4.83952 4.87247 4.93975 5.03319 5.10054 5.20416 5.24803 5.43712 5.65739 5.75894 5.82404 6.07020 6.17017 6.23281 6.49477 6.84797 6.85287 7.37273 8.91180 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053237 B = 0.004152 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.828033 B = 6742.113625 C = 6814.506319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.162 3.838 3 H 0.099 0.901 4 C 0.081 3.919 5 H 0.045 0.955 6 C -0.127 4.127 7 N -0.687 5.687 8 C 0.087 3.913 9 C 0.032 3.968 10 C -0.546 4.546 11 H 0.059 0.941 12 C 0.003 3.997 13 N -0.930 5.930 14 Si 0.965 3.035 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.269 1.269 18 N -0.367 5.367 19 C 0.048 3.952 20 C -0.283 4.283 21 C 0.034 3.966 22 N -0.334 5.334 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.344 0.656 30 H 0.053 0.947 31 H 0.024 0.976 32 H -0.003 1.003 33 H -0.006 1.006 34 H 0.264 0.736 35 H 0.193 0.807 36 H 0.168 0.832 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -5.190 19.511 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.117 0.883 4 C -0.030 4.030 5 H 0.063 0.937 6 C -0.185 4.185 7 N -0.322 5.322 8 C -0.042 4.042 9 C -0.005 4.005 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.789 3.211 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.194 1.194 18 N -0.150 5.150 19 C -0.098 4.098 20 C -0.312 4.312 21 C -0.151 4.151 22 N -0.156 5.156 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.166 0.834 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.210 0.790 36 H 0.186 0.814 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.982 -3.733 18.511 18.987 hybrid contribution -1.064 -1.433 -0.410 1.831 sum 0.918 -5.166 18.101 18.846 Atomic orbital electron populations 1.22242 0.91112 1.04390 1.04513 1.21309 0.95641 0.96715 0.80385 0.88328 1.21799 0.96413 0.95934 0.88808 0.93693 1.21639 0.94545 1.01819 1.00489 1.60566 1.34137 1.33778 1.03690 1.21806 0.99131 0.93222 0.89997 1.18912 0.94615 0.95030 0.91970 1.21572 1.44206 0.96962 0.95746 0.92245 1.25939 0.94753 0.96794 1.02043 1.70088 1.45100 1.16321 1.25512 0.85507 0.78884 0.78731 0.77954 1.19023 1.20807 1.19370 1.48813 1.19205 1.24781 1.22165 1.23027 1.00650 0.90849 0.95248 1.21835 0.98843 1.06867 1.03658 1.24415 1.00058 0.93596 0.97079 1.77364 1.04019 1.25532 1.08642 0.90027 0.89412 0.90398 0.92708 0.93592 0.92750 0.83416 0.92821 0.95785 0.98503 0.98765 0.92710 0.78991 0.81435 0.77863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.59 71.98 0.62 -2.38 16 2 C 0.16 3.84 3.04 44.99 0.14 3.98 16 3 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.08 2.30 2.42 44.92 0.11 2.41 16 5 H 0.05 1.28 7.80 -2.39 -0.02 1.26 16 6 C -0.13 -3.85 9.23 71.98 0.66 -3.19 16 7 N -0.69 -23.31 6.31 -491.57 -3.10 -26.41 16 8 C 0.09 3.59 5.42 86.30 0.47 4.06 16 9 C 0.03 1.69 5.23 29.85 0.16 1.85 16 10 C -0.55 -30.94 9.11 25.60 0.23 -30.70 16 11 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 12 C 0.00 0.17 5.46 84.66 0.46 0.63 16 13 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 14 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 N -0.37 -8.74 2.89 -327.49 -0.95 -9.69 16 19 C 0.05 0.93 10.59 83.54 0.88 1.82 16 20 C -0.28 -5.11 10.80 21.99 0.24 -4.87 16 21 C 0.03 0.70 12.03 85.24 1.03 1.72 16 22 N -0.33 -8.85 11.91 -57.02 -0.68 -9.53 16 23 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.09 1.65 6.21 -2.39 -0.01 1.64 16 25 H 0.08 1.24 7.15 -2.39 -0.02 1.22 16 26 H 0.05 1.62 7.04 -2.39 -0.02 1.61 16 27 H 0.04 1.47 7.45 -2.39 -0.02 1.45 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.34 10.72 6.17 -89.70 -0.55 10.17 16 30 H 0.05 2.27 7.44 -2.38 -0.02 2.25 16 31 H 0.02 0.95 8.06 -2.38 -0.02 0.93 16 32 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.19 2.57 7.25 -2.91 -0.02 2.55 16 36 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.20 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -66.96 304.62 3.07 -63.89 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.49 Total: 16.55 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 4.99 Total: -24.68 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -4.44 Total: -101.70 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.96 3.07 -63.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071882134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.970 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds