Wall clock time and date at job start Sun Mar 29 2020 21:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46885 * 2 1 4 4 N 1.46904 * 109.47247 * 119.99224 * 2 1 3 5 5 C 1.46906 * 111.00240 * 275.00896 * 4 2 1 6 6 C 1.52994 * 109.47074 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47067 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00186 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99844 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99931 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47260 * 89.99860 * 11 9 7 13 13 H 1.48504 * 109.46888 * 209.99451 * 11 9 7 14 14 H 1.48500 * 109.47188 * 329.99470 * 11 9 7 15 15 C 1.53001 * 109.47823 * 239.99568 * 2 1 3 16 16 H 1.08990 * 109.47338 * 185.00034 * 15 2 1 17 17 C 1.53003 * 109.46900 * 305.00284 * 15 2 1 18 18 N 1.46500 * 109.46991 * 64.99660 * 15 2 1 19 19 C 1.34947 * 126.04040 * 275.00665 * 18 15 2 20 20 C 1.35311 * 107.75028 * 180.02562 * 19 18 15 21 21 C 1.39876 * 107.91749 * 359.97438 * 20 19 18 22 22 N 1.30834 * 108.20073 * 0.27043 * 21 20 19 23 23 H 1.08997 * 109.47683 * 300.00147 * 1 2 3 24 24 H 1.08998 * 109.47259 * 60.00756 * 1 2 3 25 25 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.00897 * 111.00234 * 151.04996 * 4 2 1 27 27 H 1.09007 * 109.46567 * 299.99595 * 5 4 2 28 28 H 1.08995 * 109.47249 * 59.99050 * 5 4 2 29 29 H 1.08999 * 109.47087 * 299.99507 * 6 5 4 30 30 H 1.08996 * 109.47154 * 59.99850 * 6 5 4 31 31 H 0.96996 * 119.99855 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.47228 * 179.97438 * 17 15 2 33 33 H 1.09008 * 109.46742 * 299.99888 * 17 15 2 34 34 H 1.08997 * 109.47319 * 59.99040 * 17 15 2 35 35 H 1.08009 * 126.12504 * 0.02894 * 19 18 15 36 36 H 1.08001 * 126.04065 * 180.02562 * 20 19 18 37 37 H 1.08002 * 125.89548 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 2.0823 0.2228 2.3470 6 6 2.5949 -0.5328 3.5746 7 6 2.6597 0.4062 4.7515 8 1 2.3652 1.4387 4.6354 9 6 3.0960 -0.0526 5.9763 10 7 3.4552 -1.3099 6.1176 11 14 3.1770 1.1115 7.4349 12 1 1.8834 1.0828 8.1636 13 1 4.2687 0.6862 8.3475 14 1 3.4435 2.4907 6.9533 15 6 2.0401 -0.7213 -1.2491 16 1 3.1264 -0.7995 -1.2054 17 6 1.4301 -2.1230 -1.3135 18 7 1.6526 0.0352 -2.4424 19 6 0.4712 -0.0520 -3.0887 20 6 0.5095 0.8044 -4.1356 21 6 1.7570 1.4372 -4.1284 22 7 2.4450 0.9728 -3.1171 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.9173 -1.1203 1.0289 27 1 2.7587 1.0465 2.1182 28 1 1.0869 0.6166 2.5525 29 1 1.9182 -1.3562 3.8031 30 1 3.5902 -0.9268 3.3693 31 1 3.7618 -1.6328 6.9793 32 1 1.7931 -2.6367 -2.2036 33 1 1.7184 -2.6858 -0.4256 34 1 0.3438 -2.0448 -1.3571 35 1 -0.3568 -0.6910 -2.8187 36 1 -0.2833 0.9707 -4.8499 37 1 2.0956 2.1774 -4.8383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071882135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:31 Heat of formation + Delta-G solvation = 68.523877 kcal Electronic energy + Delta-G solvation = -16638.385700 eV Core-core repulsion = 14031.166001 eV Total energy + Delta-G solvation = -2607.219699 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30132 -37.76631 -34.44179 -32.71213 -30.51748 -30.12112 -28.94551 -28.06484 -25.12651 -23.86162 -21.42872 -20.94560 -20.51361 -19.51356 -17.05840 -16.36950 -15.90828 -15.36736 -14.76346 -14.49514 -14.27506 -13.74495 -13.43184 -12.98079 -12.86658 -12.67855 -12.27395 -12.22667 -12.06100 -11.66197 -11.20800 -11.09884 -10.91795 -10.84673 -10.68434 -10.54661 -10.00484 -9.50608 -9.35547 -9.18207 -8.61709 -8.37998 -7.97719 -6.02325 -4.04945 1.88620 2.44618 2.81548 3.30921 3.37093 3.40487 4.36526 4.42919 4.60319 4.71713 4.81356 4.92716 4.97990 5.33900 5.35235 5.41608 5.58874 5.60997 5.66313 5.78128 5.87897 5.95579 6.00900 6.07097 6.26148 6.32402 6.41553 6.61884 6.92977 7.00279 7.35699 7.66389 7.70416 7.74191 7.87029 8.03138 8.40054 9.02008 9.59097 11.09087 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.050064 B = 0.004176 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.149904 B = 6703.242720 C = 6890.461973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 H 0.046 0.954 4 N -0.679 5.679 5 C 0.067 3.933 6 C 0.026 3.974 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.156 3.844 16 H 0.099 0.901 17 C -0.159 4.159 18 N -0.357 5.357 19 C 0.061 3.939 20 C -0.284 4.284 21 C 0.039 3.961 22 N -0.299 5.299 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.336 0.664 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.014 0.986 31 H 0.261 0.739 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.170 0.830 36 H 0.144 0.856 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 0.542 -18.637 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 H 0.064 0.936 4 N -0.311 5.311 5 C -0.061 4.061 6 C -0.011 4.011 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.054 3.946 16 H 0.117 0.883 17 C -0.217 4.217 18 N -0.140 5.140 19 C -0.086 4.086 20 C -0.313 4.313 21 C -0.147 4.147 22 N -0.120 5.120 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.154 0.846 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.187 0.813 36 H 0.162 0.838 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.468 0.145 -17.568 18.400 hybrid contribution 0.041 1.180 0.194 1.197 sum -5.427 1.325 -17.374 18.250 Atomic orbital electron populations 1.21923 0.94455 1.02453 1.01444 1.21823 0.96735 0.96313 0.88935 0.93566 1.60751 1.33094 1.33968 1.03281 1.22233 0.99791 0.93485 0.90606 1.19063 0.96249 0.95811 0.90005 1.21164 1.44057 0.96337 0.94579 0.92788 1.24994 0.95328 0.95121 0.98854 1.69968 1.44439 1.14361 1.24464 0.86584 0.77716 0.81147 0.82495 1.20605 1.21185 1.19916 1.21520 1.01092 0.90776 0.81236 0.88299 1.22193 1.01882 0.93882 1.03718 1.48896 1.10874 1.31805 1.22392 1.22470 0.90969 1.00844 0.94355 1.21472 1.00485 1.05407 1.03969 1.23842 0.93543 1.00327 0.97016 1.77383 1.18995 1.06491 1.09143 0.92011 0.93076 0.91465 0.84560 0.96495 0.92185 0.95570 0.96766 0.92964 0.92289 0.88571 0.91232 0.81255 0.83832 0.80365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.57 37.16 0.32 -1.58 16 2 C 0.07 1.05 2.60 -67.71 -0.18 0.87 16 3 H 0.05 0.77 7.80 -51.93 -0.40 0.36 16 4 N -0.68 -11.36 5.76 -106.72 -0.62 -11.98 16 5 C 0.07 1.39 5.42 -3.82 -0.02 1.37 16 6 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 11 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.16 1.92 3.09 -67.93 -0.21 1.71 16 16 H 0.10 1.27 8.02 -51.93 -0.42 0.85 16 17 C -0.16 -1.60 8.23 37.16 0.31 -1.30 16 18 N -0.36 -4.58 3.43 -54.86 -0.19 -4.77 16 19 C 0.06 0.65 8.54 -17.23 -0.15 0.50 16 20 C -0.28 -2.95 10.80 -40.01 -0.43 -3.38 16 21 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 22 N -0.30 -4.29 12.58 30.63 0.39 -3.91 16 23 H 0.06 0.89 7.45 -51.93 -0.39 0.51 16 24 H 0.05 0.61 6.20 -51.93 -0.32 0.29 16 25 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 26 H 0.34 5.38 8.28 -39.29 -0.33 5.05 16 27 H 0.02 0.36 8.06 -51.92 -0.42 -0.06 16 28 H 0.06 1.26 7.44 -51.93 -0.39 0.87 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.02 7.75 -51.92 -0.40 0.62 16 34 H 0.07 0.64 5.36 -51.93 -0.28 0.36 16 35 H 0.17 1.37 7.20 -52.48 -0.38 0.99 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -31.41 301.50 -6.99 -38.41 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.70 Total: 1.68 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -1.13 Total: -14.59 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.32 Total: -46.71 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.41 -6.99 -38.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071882135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.929 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds