Wall clock time and date at job start Sun Mar 29 2020 21:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46885 * 2 1 4 4 N 1.46904 * 109.47247 * 119.99224 * 2 1 3 5 5 C 1.46906 * 111.00240 * 275.00896 * 4 2 1 6 6 C 1.52994 * 109.47074 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47067 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00186 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99844 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99931 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47260 * 89.99860 * 11 9 7 13 13 H 1.48504 * 109.46888 * 209.99451 * 11 9 7 14 14 H 1.48500 * 109.47188 * 329.99470 * 11 9 7 15 15 C 1.53001 * 109.47823 * 239.99568 * 2 1 3 16 16 H 1.08990 * 109.47338 * 185.00034 * 15 2 1 17 17 C 1.53003 * 109.46900 * 305.00284 * 15 2 1 18 18 N 1.46500 * 109.46991 * 64.99660 * 15 2 1 19 19 C 1.34947 * 126.04040 * 275.00665 * 18 15 2 20 20 C 1.35311 * 107.75028 * 180.02562 * 19 18 15 21 21 C 1.39876 * 107.91749 * 359.97438 * 20 19 18 22 22 N 1.30834 * 108.20073 * 0.27043 * 21 20 19 23 23 H 1.08997 * 109.47683 * 300.00147 * 1 2 3 24 24 H 1.08998 * 109.47259 * 60.00756 * 1 2 3 25 25 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.00897 * 111.00234 * 151.04996 * 4 2 1 27 27 H 1.09007 * 109.46567 * 299.99595 * 5 4 2 28 28 H 1.08995 * 109.47249 * 59.99050 * 5 4 2 29 29 H 1.08999 * 109.47087 * 299.99507 * 6 5 4 30 30 H 1.08996 * 109.47154 * 59.99850 * 6 5 4 31 31 H 0.96996 * 119.99855 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.47228 * 179.97438 * 17 15 2 33 33 H 1.09008 * 109.46742 * 299.99888 * 17 15 2 34 34 H 1.08997 * 109.47319 * 59.99040 * 17 15 2 35 35 H 1.08009 * 126.12504 * 0.02894 * 19 18 15 36 36 H 1.08001 * 126.04065 * 180.02562 * 20 19 18 37 37 H 1.08002 * 125.89548 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 2.0823 0.2228 2.3470 6 6 2.5949 -0.5328 3.5746 7 6 2.6597 0.4062 4.7515 8 1 2.3652 1.4387 4.6354 9 6 3.0960 -0.0526 5.9763 10 7 3.4552 -1.3099 6.1176 11 14 3.1770 1.1115 7.4349 12 1 1.8834 1.0828 8.1636 13 1 4.2687 0.6862 8.3475 14 1 3.4435 2.4907 6.9533 15 6 2.0401 -0.7213 -1.2491 16 1 3.1264 -0.7995 -1.2054 17 6 1.4301 -2.1230 -1.3135 18 7 1.6526 0.0352 -2.4424 19 6 0.4712 -0.0520 -3.0887 20 6 0.5095 0.8044 -4.1356 21 6 1.7570 1.4372 -4.1284 22 7 2.4450 0.9728 -3.1171 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.9173 -1.1203 1.0289 27 1 2.7587 1.0465 2.1182 28 1 1.0869 0.6166 2.5525 29 1 1.9182 -1.3562 3.8031 30 1 3.5902 -0.9268 3.3693 31 1 3.7618 -1.6328 6.9793 32 1 1.7931 -2.6367 -2.2036 33 1 1.7184 -2.6858 -0.4256 34 1 0.3438 -2.0448 -1.3571 35 1 -0.3568 -0.6910 -2.8187 36 1 -0.2833 0.9707 -4.8499 37 1 2.0956 2.1774 -4.8383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071882135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:31 Heat of formation + Delta-G solvation = 47.691186 kcal Electronic energy + Delta-G solvation = -16639.289073 eV Core-core repulsion = 14031.166001 eV Total energy + Delta-G solvation = -2608.123073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.18276 -38.97880 -36.04610 -34.52645 -31.97328 -30.98954 -29.99686 -29.52637 -26.55106 -25.36944 -22.78752 -22.11285 -21.77253 -20.52532 -18.51312 -17.98825 -17.18108 -16.56515 -16.40729 -15.82360 -15.50304 -14.88812 -14.62210 -14.42282 -14.09779 -13.86172 -13.68282 -13.18942 -13.13126 -13.00177 -12.87669 -12.83723 -12.41282 -12.26253 -11.98714 -11.73245 -11.56079 -11.42711 -11.29048 -10.57672 -10.34708 -9.53052 -9.40313 -8.22151 -6.33368 1.02081 1.39364 1.40553 1.51427 1.55160 2.00202 2.39203 3.11485 3.23635 3.49728 3.64197 3.98769 4.01333 4.11128 4.32249 4.40565 4.47138 4.58405 4.69733 4.76728 4.81415 4.85562 4.91931 4.96225 5.01195 5.17219 5.22088 5.36605 5.42143 5.64579 5.74166 5.80528 6.03950 6.16312 6.22124 6.43627 6.83110 6.83494 7.35842 8.89804 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.050064 B = 0.004176 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.149904 B = 6703.242720 C = 6890.461973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.021 0.979 4 N -0.673 5.673 5 C 0.086 3.914 6 C 0.034 3.966 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.004 3.996 10 N -0.929 5.929 11 Si 0.965 3.035 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.266 1.266 15 C 0.162 3.838 16 H 0.088 0.912 17 C -0.151 4.151 18 N -0.369 5.369 19 C 0.057 3.943 20 C -0.286 4.286 21 C 0.035 3.965 22 N -0.350 5.350 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.340 0.660 27 H 0.010 0.990 28 H 0.059 0.941 29 H 0.001 0.999 30 H -0.007 1.007 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.198 0.802 36 H 0.171 0.829 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 1.004 -19.558 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.039 0.961 4 N -0.305 5.305 5 C -0.043 4.043 6 C -0.004 4.004 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.195 4.195 10 N -0.569 5.569 11 Si 0.789 3.211 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.190 1.190 15 C 0.060 3.940 16 H 0.106 0.894 17 C -0.209 4.209 18 N -0.152 5.152 19 C -0.089 4.089 20 C -0.315 4.315 21 C -0.150 4.150 22 N -0.171 5.171 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.159 0.841 27 H 0.029 0.971 28 H 0.077 0.923 29 H 0.019 0.981 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.215 0.785 36 H 0.188 0.812 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.719 0.611 -18.517 19.707 hybrid contribution 0.414 1.036 0.388 1.182 sum -6.304 1.647 -18.128 19.264 Atomic orbital electron populations 1.21883 0.93040 1.03372 1.01361 1.21805 0.97685 0.94949 0.88856 0.96060 1.60651 1.33405 1.33078 1.03412 1.21813 0.99072 0.93066 0.90306 1.18897 0.94593 0.95106 0.91758 1.21593 1.44260 0.96886 0.95837 0.92537 1.25926 0.94691 0.96839 1.02006 1.70091 1.45092 1.16264 1.25442 0.85454 0.78082 0.78999 0.78546 1.19619 1.20571 1.19033 1.21362 1.00620 0.91619 0.80442 0.89431 1.22149 1.02634 0.92138 1.03958 1.48881 1.11602 1.32120 1.22585 1.23036 0.90802 1.00981 0.94039 1.21868 1.00618 1.04716 1.04261 1.24407 0.93899 1.00205 0.96481 1.77341 1.20833 1.08134 1.10825 0.93670 0.91551 0.89991 0.84125 0.97135 0.92294 0.98069 0.98851 0.92667 0.91168 0.89174 0.89761 0.78490 0.81170 0.77960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.57 71.98 0.62 -2.82 16 2 C 0.08 2.21 2.60 44.91 0.12 2.33 16 3 H 0.02 0.72 7.80 -2.38 -0.02 0.70 16 4 N -0.67 -22.72 5.76 -491.55 -2.83 -25.56 16 5 C 0.09 3.66 5.42 86.30 0.47 4.12 16 6 C 0.03 1.80 5.23 29.85 0.16 1.96 16 7 C -0.55 -31.48 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.00 0.21 5.46 84.65 0.46 0.67 16 10 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 11 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 15 C 0.16 3.88 3.09 44.99 0.14 4.02 16 16 H 0.09 2.27 8.02 -2.39 -0.02 2.25 16 17 C -0.15 -2.76 8.23 71.98 0.59 -2.17 16 18 N -0.37 -8.99 3.43 -327.49 -1.12 -10.12 16 19 C 0.06 1.08 8.54 83.54 0.71 1.80 16 20 C -0.29 -5.16 10.80 21.99 0.24 -4.92 16 21 C 0.04 0.76 12.03 85.24 1.03 1.78 16 22 N -0.35 -9.82 12.58 -57.02 -0.72 -10.54 16 23 H 0.04 1.26 7.45 -2.39 -0.02 1.25 16 24 H 0.07 1.43 6.20 -2.39 -0.01 1.42 16 25 H 0.08 1.78 6.35 -2.38 -0.02 1.77 16 26 H 0.34 11.08 8.28 -89.70 -0.74 10.34 16 27 H 0.01 0.45 8.06 -2.38 -0.02 0.43 16 28 H 0.06 2.50 7.44 -2.39 -0.02 2.48 16 29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.79 7.75 -2.38 -0.02 1.77 16 34 H 0.08 1.29 5.36 -2.39 -0.01 1.27 16 35 H 0.20 2.43 7.20 -2.91 -0.02 2.40 16 36 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -68.13 301.50 2.70 -65.43 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.31 Total: 14.97 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 4.76 Total: -24.46 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -4.39 Total: -102.41 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -68.13 2.70 -65.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071882135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.119 kcal (2) G-P(sol) polarization free energy of solvation -68.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds