Wall clock time and date at job start Sun Mar 29 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46793 * 2 1 4 4 N 1.46902 * 109.47301 * 239.99683 * 2 1 3 5 5 C 1.46903 * 110.99558 * 84.99918 * 4 2 1 6 6 C 1.53001 * 109.46711 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.46979 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00092 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99716 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00109 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47207 * 90.00007 * 11 9 7 13 13 H 1.48498 * 109.47050 * 209.99981 * 11 9 7 14 14 H 1.48497 * 109.47048 * 329.99895 * 11 9 7 15 15 C 1.53006 * 109.46974 * 119.99615 * 2 1 3 16 16 H 1.09001 * 109.46740 * 180.02562 * 15 2 1 17 17 C 1.53000 * 109.46700 * 60.00192 * 15 2 1 18 18 N 1.46500 * 109.47058 * 300.00031 * 15 2 1 19 19 C 1.34943 * 126.03414 * 84.71702 * 18 15 2 20 20 C 1.35316 * 107.74531 * 180.25880 * 19 18 15 21 21 C 1.39873 * 107.91987 * 0.02562 * 20 19 18 22 22 N 1.30832 * 108.20166 * 0.02562 * 21 20 19 23 23 H 1.08998 * 109.47140 * 299.99997 * 1 2 3 24 24 H 1.09000 * 109.47156 * 60.00351 * 1 2 3 25 25 H 1.08997 * 109.46793 * 180.02562 * 1 2 3 26 26 H 1.00891 * 110.99802 * 208.95070 * 4 2 1 27 27 H 1.09000 * 109.47236 * 300.00181 * 5 4 2 28 28 H 1.08995 * 109.46980 * 60.00306 * 5 4 2 29 29 H 1.09000 * 109.47406 * 300.00062 * 6 5 4 30 30 H 1.08995 * 109.47161 * 60.00403 * 6 5 4 31 31 H 0.97002 * 119.99622 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.46637 * 179.97438 * 17 15 2 33 33 H 1.08988 * 109.47226 * 299.99602 * 17 15 2 34 34 H 1.08998 * 109.47467 * 60.00221 * 17 15 2 35 35 H 1.07996 * 126.13000 * 0.26422 * 19 18 15 36 36 H 1.07997 * 126.04396 * 180.02562 * 20 19 18 37 37 H 1.07999 * 125.89561 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5333 -3.5744 7 6 2.6589 0.4053 -4.7517 8 1 2.3638 1.4377 -4.6359 9 6 3.0940 -0.0540 -5.9768 10 7 3.4529 -1.3114 -6.1179 11 14 3.1738 1.1096 -7.4360 12 1 4.5104 1.7552 -7.4818 13 1 2.9492 0.3468 -8.6901 14 1 2.1253 2.1517 -7.2959 15 6 2.0400 -0.7212 1.2493 16 1 3.1300 -0.7208 1.2495 17 6 1.5300 -2.1637 1.2493 18 7 1.5517 -0.0305 2.4454 19 6 0.3525 -0.2166 3.0356 20 6 0.2855 0.6114 4.1038 21 6 1.4847 1.3284 4.1683 22 7 2.2441 0.9451 3.1742 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.9173 -1.1205 -1.0286 27 1 1.0871 0.6163 -2.5525 28 1 2.7589 1.0461 -2.1182 29 1 3.5904 -0.9273 -3.3691 30 1 1.9184 -1.3566 -3.8029 31 1 3.7587 -1.6346 -6.9799 32 1 1.8937 -2.6776 2.1391 33 1 0.4401 -2.1637 1.2493 34 1 1.8934 -2.6776 0.3594 35 1 -0.4162 -0.9033 2.7132 36 1 -0.5467 0.7025 4.7860 37 1 1.7394 2.0709 4.9101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071882136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:33 Heat of formation + Delta-G solvation = 68.802248 kcal Electronic energy + Delta-G solvation = -16648.663484 eV Core-core repulsion = 14041.455856 eV Total energy + Delta-G solvation = -2607.207628 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.30915 -37.76249 -34.42970 -32.70912 -30.48821 -30.12695 -28.98961 -28.06025 -25.08391 -23.88148 -21.43683 -20.93624 -20.51415 -19.51264 -17.03924 -16.36962 -15.92033 -15.40713 -14.74676 -14.49590 -14.27011 -13.73928 -13.41091 -12.99084 -12.84941 -12.63927 -12.26801 -12.21813 -12.10103 -11.67359 -11.20917 -11.10151 -10.90232 -10.85519 -10.68583 -10.54595 -10.00634 -9.50233 -9.35314 -9.18467 -8.61288 -8.38224 -7.98043 -6.02553 -4.05157 1.88758 2.45067 2.81715 3.30701 3.36972 3.40412 4.35993 4.43270 4.60544 4.72080 4.82051 4.92562 4.98170 5.33704 5.35787 5.42680 5.58815 5.61385 5.67346 5.78400 5.88740 5.95931 6.01313 6.08254 6.26007 6.32585 6.41458 6.62160 6.92787 7.00459 7.35472 7.65949 7.70565 7.73981 7.86865 8.02876 8.39830 9.01796 9.58896 11.08840 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.051936 B = 0.004162 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.999462 B = 6726.324354 C = 6911.309692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 H 0.046 0.954 4 N -0.678 5.678 5 C 0.067 3.933 6 C 0.026 3.974 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.156 3.844 16 H 0.099 0.901 17 C -0.158 4.158 18 N -0.357 5.357 19 C 0.062 3.938 20 C -0.284 4.284 21 C 0.039 3.961 22 N -0.299 5.299 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.336 0.664 27 H 0.060 0.940 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.170 0.830 36 H 0.144 0.856 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 0.297 18.491 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 H 0.064 0.936 4 N -0.311 5.311 5 C -0.061 4.061 6 C -0.011 4.011 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.053 3.947 16 H 0.117 0.883 17 C -0.216 4.216 18 N -0.139 5.139 19 C -0.085 4.085 20 C -0.314 4.314 21 C -0.147 4.147 22 N -0.120 5.120 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.154 0.846 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.187 0.813 36 H 0.162 0.838 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.460 0.002 17.471 18.304 hybrid contribution 0.038 1.113 -0.230 1.137 sum -5.422 1.115 17.241 18.107 Atomic orbital electron populations 1.21918 0.94469 1.02382 1.01481 1.21819 0.96769 0.96287 0.88947 0.93571 1.60766 1.33065 1.33955 1.03270 1.22235 0.99804 0.93490 0.90612 1.19063 0.96238 0.95816 0.90003 1.21164 1.44080 0.96341 0.94557 0.92787 1.24995 0.95347 0.95103 0.98849 1.69970 1.44437 1.14307 1.24515 0.86585 0.78392 0.80875 0.82094 1.20676 1.21157 1.19875 1.21515 1.00083 0.91943 0.81110 0.88341 1.22166 1.02537 0.93205 1.03677 1.48884 1.12138 1.30661 1.22256 1.22465 0.90118 1.00952 0.94990 1.21471 1.01391 1.04969 1.03543 1.23837 0.93156 1.00365 0.97368 1.77378 1.21030 1.06004 1.07637 0.93009 0.92008 0.91595 0.84570 0.92177 0.96491 0.96779 0.95564 0.92964 0.92306 0.91254 0.88559 0.81257 0.83836 0.80377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.56 37.16 0.32 -1.60 16 2 C 0.07 1.05 2.63 -67.71 -0.18 0.87 16 3 H 0.05 0.76 7.80 -51.93 -0.40 0.36 16 4 N -0.68 -11.30 5.59 -106.72 -0.60 -11.90 16 5 C 0.07 1.38 5.42 -3.82 -0.02 1.36 16 6 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 11 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.16 1.92 3.08 -67.93 -0.21 1.71 16 16 H 0.10 1.25 8.12 -51.93 -0.42 0.83 16 17 C -0.16 -1.61 8.33 37.16 0.31 -1.30 16 18 N -0.36 -4.56 3.37 -54.86 -0.18 -4.75 16 19 C 0.06 0.66 8.33 -17.23 -0.14 0.52 16 20 C -0.28 -2.95 10.80 -40.01 -0.43 -3.38 16 21 C 0.04 0.44 12.03 -17.37 -0.21 0.23 16 22 N -0.30 -4.28 12.58 30.62 0.39 -3.89 16 23 H 0.05 0.63 6.12 -51.93 -0.32 0.31 16 24 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 25 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 26 H 0.34 5.33 8.19 -39.30 -0.32 5.01 16 27 H 0.06 1.26 7.44 -51.93 -0.39 0.88 16 28 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.65 5.44 -51.94 -0.28 0.37 16 34 H 0.10 1.03 7.48 -51.93 -0.39 0.64 16 35 H 0.17 1.38 7.26 -52.49 -0.38 1.00 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 301.04 15.07 4.54 4.54 Total: -1.00 -31.32 301.04 -6.97 -38.29 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.70 Total: 1.68 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.12 Total: -14.59 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.34 Total: -46.56 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.32 -6.97 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071882136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.091 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds