Wall clock time and date at job start Sun Mar 29 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46793 * 2 1 4 4 N 1.46902 * 109.47301 * 239.99683 * 2 1 3 5 5 C 1.46903 * 110.99558 * 84.99918 * 4 2 1 6 6 C 1.53001 * 109.46711 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.46979 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00092 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99716 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00109 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47207 * 90.00007 * 11 9 7 13 13 H 1.48498 * 109.47050 * 209.99981 * 11 9 7 14 14 H 1.48497 * 109.47048 * 329.99895 * 11 9 7 15 15 C 1.53006 * 109.46974 * 119.99615 * 2 1 3 16 16 H 1.09001 * 109.46740 * 180.02562 * 15 2 1 17 17 C 1.53000 * 109.46700 * 60.00192 * 15 2 1 18 18 N 1.46500 * 109.47058 * 300.00031 * 15 2 1 19 19 C 1.34943 * 126.03414 * 84.71702 * 18 15 2 20 20 C 1.35316 * 107.74531 * 180.25880 * 19 18 15 21 21 C 1.39873 * 107.91987 * 0.02562 * 20 19 18 22 22 N 1.30832 * 108.20166 * 0.02562 * 21 20 19 23 23 H 1.08998 * 109.47140 * 299.99997 * 1 2 3 24 24 H 1.09000 * 109.47156 * 60.00351 * 1 2 3 25 25 H 1.08997 * 109.46793 * 180.02562 * 1 2 3 26 26 H 1.00891 * 110.99802 * 208.95070 * 4 2 1 27 27 H 1.09000 * 109.47236 * 300.00181 * 5 4 2 28 28 H 1.08995 * 109.46980 * 60.00306 * 5 4 2 29 29 H 1.09000 * 109.47406 * 300.00062 * 6 5 4 30 30 H 1.08995 * 109.47161 * 60.00403 * 6 5 4 31 31 H 0.97002 * 119.99622 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.46637 * 179.97438 * 17 15 2 33 33 H 1.08988 * 109.47226 * 299.99602 * 17 15 2 34 34 H 1.08998 * 109.47467 * 60.00221 * 17 15 2 35 35 H 1.07996 * 126.13000 * 0.26422 * 19 18 15 36 36 H 1.07997 * 126.04396 * 180.02562 * 20 19 18 37 37 H 1.07999 * 125.89561 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5333 -3.5744 7 6 2.6589 0.4053 -4.7517 8 1 2.3638 1.4377 -4.6359 9 6 3.0940 -0.0540 -5.9768 10 7 3.4529 -1.3114 -6.1179 11 14 3.1738 1.1096 -7.4360 12 1 4.5104 1.7552 -7.4818 13 1 2.9492 0.3468 -8.6901 14 1 2.1253 2.1517 -7.2959 15 6 2.0400 -0.7212 1.2493 16 1 3.1300 -0.7208 1.2495 17 6 1.5300 -2.1637 1.2493 18 7 1.5517 -0.0305 2.4454 19 6 0.3525 -0.2166 3.0356 20 6 0.2855 0.6114 4.1038 21 6 1.4847 1.3284 4.1683 22 7 2.2441 0.9451 3.1742 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.9173 -1.1205 -1.0286 27 1 1.0871 0.6163 -2.5525 28 1 2.7589 1.0461 -2.1182 29 1 3.5904 -0.9273 -3.3691 30 1 1.9184 -1.3566 -3.8029 31 1 3.7587 -1.6346 -6.9799 32 1 1.8937 -2.6776 2.1391 33 1 0.4401 -2.1637 1.2493 34 1 1.8934 -2.6776 0.3594 35 1 -0.4162 -0.9033 2.7132 36 1 -0.5467 0.7025 4.7860 37 1 1.7394 2.0709 4.9101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071882136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:33 Heat of formation + Delta-G solvation = 48.171630 kcal Electronic energy + Delta-G solvation = -16649.558095 eV Core-core repulsion = 14041.455856 eV Total energy + Delta-G solvation = -2608.102239 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.19004 -38.97547 -36.03381 -34.51656 -31.95496 -30.99660 -29.97116 -29.58788 -26.50734 -25.38079 -22.78914 -22.12248 -21.75509 -20.52520 -18.50783 -17.97220 -17.18222 -16.59565 -16.41731 -15.81367 -15.50465 -14.87041 -14.62658 -14.40827 -14.07858 -13.85323 -13.64817 -13.19211 -13.14860 -13.03401 -12.88099 -12.84568 -12.40133 -12.26865 -11.97637 -11.73695 -11.56234 -11.42577 -11.28882 -10.57573 -10.33644 -9.52251 -9.40270 -8.22006 -6.33141 1.02209 1.39483 1.40511 1.51638 1.55692 2.00545 2.39296 3.11666 3.22857 3.50553 3.64600 3.98827 4.00769 4.11339 4.32795 4.40711 4.47464 4.58646 4.69426 4.76985 4.81808 4.85413 4.91176 4.96668 5.01448 5.17560 5.22407 5.36329 5.42436 5.64899 5.74501 5.80978 6.04152 6.16635 6.22247 6.44156 6.83378 6.83838 7.36050 8.89911 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.051936 B = 0.004162 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.999462 B = 6726.324354 C = 6911.309692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.078 3.922 3 H 0.022 0.978 4 N -0.673 5.673 5 C 0.086 3.914 6 C 0.034 3.966 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.004 3.996 10 N -0.929 5.929 11 Si 0.964 3.036 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.265 1.265 15 C 0.162 3.838 16 H 0.088 0.912 17 C -0.150 4.150 18 N -0.369 5.369 19 C 0.058 3.942 20 C -0.286 4.286 21 C 0.036 3.964 22 N -0.349 5.349 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.341 0.659 27 H 0.058 0.942 28 H 0.011 0.989 29 H -0.007 1.007 30 H 0.001 0.999 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.197 0.803 36 H 0.171 0.829 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 0.707 19.381 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 H 0.040 0.960 4 N -0.305 5.305 5 C -0.043 4.043 6 C -0.003 4.003 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.195 4.195 10 N -0.569 5.569 11 Si 0.789 3.211 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C 0.060 3.940 16 H 0.106 0.894 17 C -0.208 4.208 18 N -0.151 5.151 19 C -0.088 4.088 20 C -0.315 4.315 21 C -0.150 4.150 22 N -0.171 5.171 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.159 0.841 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.012 0.988 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.214 0.786 36 H 0.188 0.812 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.636 0.416 18.388 19.554 hybrid contribution 0.384 0.983 -0.414 1.134 sum -6.252 1.398 17.974 19.082 Atomic orbital electron populations 1.21870 0.93184 1.03262 1.01277 1.21795 0.97621 0.95000 0.88905 0.95968 1.60661 1.33421 1.33050 1.03354 1.21816 0.99068 0.93101 0.90312 1.18896 0.94603 0.95099 0.91744 1.21596 1.44260 0.96893 0.95819 0.92537 1.25923 0.94722 0.96813 1.01997 1.70092 1.45100 1.16205 1.25482 0.85459 0.78797 0.78715 0.78141 1.19837 1.20507 1.18903 1.21353 0.99596 0.92803 0.80290 0.89357 1.22121 1.03289 0.91469 1.03922 1.48869 1.12907 1.30973 1.22395 1.23016 0.89783 1.01179 0.94803 1.21864 1.01656 1.04222 1.03743 1.24402 0.93276 1.00356 0.96923 1.77337 1.22876 1.07588 1.09263 0.91719 0.93659 0.90125 0.84062 0.92364 0.97038 0.98814 0.98083 0.92674 0.91152 0.89929 0.89185 0.78607 0.81201 0.77945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.56 71.98 0.62 -2.85 16 2 C 0.08 2.20 2.63 44.92 0.12 2.32 16 3 H 0.02 0.75 7.80 -2.39 -0.02 0.73 16 4 N -0.67 -22.54 5.59 -491.55 -2.75 -25.29 16 5 C 0.09 3.62 5.42 86.30 0.47 4.09 16 6 C 0.03 1.80 5.23 29.85 0.16 1.96 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.00 0.22 5.46 84.65 0.46 0.68 16 10 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 11 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 15 C 0.16 3.87 3.08 44.99 0.14 4.01 16 16 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 17 C -0.15 -2.79 8.33 71.98 0.60 -2.19 16 18 N -0.37 -8.95 3.37 -327.49 -1.10 -10.05 16 19 C 0.06 1.10 8.33 83.54 0.70 1.80 16 20 C -0.29 -5.15 10.80 21.99 0.24 -4.92 16 21 C 0.04 0.76 12.03 85.24 1.03 1.79 16 22 N -0.35 -9.72 12.58 -57.02 -0.72 -10.44 16 23 H 0.06 1.45 6.12 -2.39 -0.01 1.44 16 24 H 0.04 1.28 7.45 -2.39 -0.02 1.26 16 25 H 0.08 1.78 6.43 -2.39 -0.02 1.76 16 26 H 0.34 10.96 8.19 -89.70 -0.73 10.23 16 27 H 0.06 2.47 7.44 -2.39 -0.02 2.45 16 28 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 29 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.31 5.44 -2.39 -0.01 1.29 16 34 H 0.09 1.81 7.48 -2.39 -0.02 1.80 16 35 H 0.20 2.48 7.26 -2.91 -0.02 2.45 16 36 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.20 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -67.75 301.04 2.81 -64.95 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.31 Total: 14.99 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 4.75 Total: -24.48 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -4.28 Total: -101.87 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.75 2.81 -64.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071882136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.118 kcal (2) G-P(sol) polarization free energy of solvation -67.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds