Wall clock time and date at job start Sun Mar 29 2020 21:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46756 * 59.99920 * 11 9 7 13 13 H 1.48490 * 109.47381 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47117 * 300.00527 * 11 9 7 15 15 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 16 16 H 1.08998 * 109.47564 * 299.99943 * 15 2 1 17 17 C 1.53007 * 109.47176 * 179.97438 * 15 2 1 18 18 N 1.46497 * 109.47136 * 60.00226 * 15 2 1 19 19 C 1.34954 * 126.03877 * 84.71269 * 18 15 2 20 20 C 1.35314 * 107.74684 * 179.84109 * 19 18 15 21 21 C 1.39870 * 107.91736 * 0.42338 * 20 19 18 22 22 N 1.30836 * 108.20572 * 359.74137 * 21 20 19 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 29 29 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 30 30 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 31 31 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.46869 * 60.00447 * 17 15 2 33 33 H 1.09001 * 109.47091 * 180.02562 * 17 15 2 34 34 H 1.08994 * 109.47388 * 300.00369 * 17 15 2 35 35 H 1.08004 * 126.12316 * 0.02562 * 19 18 15 36 36 H 1.08000 * 126.03944 * 180.16103 * 20 19 18 37 37 H 1.08005 * 125.89903 * 179.70995 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6600 0.4058 4.7515 8 1 2.3648 1.4382 4.6356 9 6 3.0954 -0.0534 5.9765 10 7 3.4544 -1.3107 6.1176 11 14 3.1767 1.1106 7.4352 12 1 1.8212 1.6489 7.7149 13 1 3.6729 0.3768 8.6270 14 1 4.0997 2.2312 7.1235 15 6 2.0399 -0.7213 -1.2492 16 1 1.6766 -1.7490 -1.2492 17 6 3.5700 -0.7208 -1.2495 18 7 1.5516 -0.0307 -2.4454 19 6 2.1268 1.0379 -3.0356 20 6 1.3737 1.3711 -4.1093 21 6 0.2962 0.4815 -4.1719 22 7 0.4018 -0.3592 -3.1750 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.4494 -1.4979 1.4101 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6163 2.5526 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9272 3.3692 31 1 3.7603 -1.6339 6.9796 32 1 3.9337 -1.2344 -0.3595 33 1 3.9333 -1.2342 -2.1397 34 1 3.9330 0.3070 -1.2498 35 1 3.0286 1.5359 -2.7110 36 1 1.5678 2.1833 -4.7942 37 1 -0.4879 0.4877 -4.9146 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071882137.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:35 Heat of formation + Delta-G solvation = 65.766814 kcal Electronic energy + Delta-G solvation = -16633.234668 eV Core-core repulsion = 14025.895414 eV Total energy + Delta-G solvation = -2607.339254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.21658 -37.62385 -34.38433 -32.80002 -30.68646 -29.90417 -29.25577 -27.81910 -24.39271 -23.77154 -21.63340 -21.11525 -20.67004 -19.62629 -17.15014 -16.38411 -15.51500 -15.01109 -14.72280 -14.44723 -14.05343 -13.70874 -13.48881 -13.32211 -12.70106 -12.61999 -12.29919 -12.19091 -11.95232 -11.59703 -11.22253 -11.13058 -10.95042 -10.85315 -10.65411 -10.59004 -10.08474 -9.55451 -9.32208 -9.19820 -8.59918 -8.38730 -7.92356 -6.03281 -4.06175 1.93228 2.51504 2.84838 3.31131 3.35793 3.37951 4.39479 4.47929 4.61107 4.84244 4.93682 5.01492 5.13913 5.32787 5.34227 5.42157 5.60291 5.69905 5.72905 5.82111 5.93724 5.98263 6.02331 6.19982 6.24480 6.29385 6.39538 6.65978 6.90168 7.06960 7.35359 7.66198 7.73463 7.74959 7.86398 8.02201 8.38669 9.00679 9.57883 11.08035 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053109 B = 0.004150 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.087298 B = 6745.299528 C = 6810.495707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.681 5.681 5 C 0.068 3.932 6 C 0.026 3.974 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.166 3.834 16 H 0.100 0.900 17 C -0.152 4.152 18 N -0.356 5.356 19 C 0.058 3.942 20 C -0.284 4.284 21 C 0.035 3.965 22 N -0.297 5.297 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.340 0.660 27 H 0.058 0.942 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.170 0.830 36 H 0.143 0.857 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 3.223 -17.907 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.038 4.038 3 H 0.096 0.904 4 N -0.312 5.312 5 C -0.059 4.059 6 C -0.011 4.011 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.064 3.936 16 H 0.118 0.882 17 C -0.210 4.210 18 N -0.138 5.138 19 C -0.090 4.090 20 C -0.313 4.313 21 C -0.150 4.150 22 N -0.118 5.118 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.158 0.842 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.187 0.813 36 H 0.160 0.840 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.618 2.085 -17.205 17.528 hybrid contribution -0.577 1.520 0.641 1.747 sum -3.194 3.605 -16.564 17.250 Atomic orbital electron populations 1.22434 0.96801 1.02342 1.02088 1.21841 0.93237 0.98071 0.90606 0.90425 1.60593 1.56199 1.10414 1.03998 1.22189 0.98383 0.95125 0.90252 1.19061 0.97009 0.95307 0.89767 1.21121 1.44238 0.96338 0.94555 0.92846 1.24993 0.95313 0.95106 0.98851 1.69959 1.44305 1.14345 1.24589 0.86646 0.78411 0.80923 0.81951 1.20290 1.21235 1.20204 1.21336 0.95215 0.96661 0.80374 0.88218 1.22069 0.92113 1.03063 1.03785 1.48985 1.18912 1.23620 1.22319 1.22512 0.99965 0.91273 0.95221 1.21455 0.99752 1.06735 1.03378 1.23823 0.99339 0.94416 0.97457 1.77357 1.02966 1.24005 1.07478 0.92371 0.92308 0.92358 0.84179 0.92330 0.96420 0.96762 0.95603 0.92892 0.88019 0.92629 0.92204 0.81298 0.83958 0.80505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.97 37.15 0.33 -2.17 16 2 C 0.07 1.04 2.35 -67.72 -0.16 0.88 16 3 H 0.08 1.14 7.80 -51.93 -0.40 0.73 16 4 N -0.68 -11.15 5.49 -106.73 -0.59 -11.73 16 5 C 0.07 1.37 5.42 -3.83 -0.02 1.35 16 6 C 0.03 0.66 5.23 -27.89 -0.15 0.51 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 11 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.17 2.09 3.09 -67.93 -0.21 1.88 16 16 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.15 -1.73 8.68 37.16 0.32 -1.41 16 18 N -0.36 -4.56 2.89 -54.86 -0.16 -4.72 16 19 C 0.06 0.64 10.59 -17.22 -0.18 0.46 16 20 C -0.28 -3.00 10.80 -40.01 -0.43 -3.44 16 21 C 0.04 0.40 12.02 -17.37 -0.21 0.19 16 22 N -0.30 -4.10 11.90 30.63 0.36 -3.73 16 23 H 0.06 0.86 7.45 -51.93 -0.39 0.47 16 24 H 0.06 0.85 7.04 -51.93 -0.37 0.49 16 25 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.34 5.50 8.47 -39.29 -0.33 5.16 16 27 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 28 H 0.02 0.36 7.44 -51.93 -0.39 -0.03 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.10 1.29 7.60 -51.93 -0.39 0.89 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.64 7.16 -51.93 -0.37 0.26 16 35 H 0.17 1.47 7.27 -52.48 -0.38 1.09 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -30.36 307.31 -7.09 -37.45 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.94 Total: 2.62 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.11 Total: -15.11 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.36 Total: -46.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.36 -7.09 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071882137.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.217 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds