Wall clock time and date at job start Sun Mar 29 2020 21:41:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.08994 * 109.47356 * 2 1
4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3
5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1
6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2
7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4
8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5
9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5
10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6
11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6
12 12 H 1.48503 * 109.46756 * 59.99920 * 11 9 7
13 13 H 1.48490 * 109.47381 * 179.97438 * 11 9 7
14 14 H 1.48496 * 109.47117 * 300.00527 * 11 9 7
15 15 C 1.52998 * 109.47083 * 239.99708 * 2 1 3
16 16 H 1.08998 * 109.47564 * 299.99943 * 15 2 1
17 17 C 1.53007 * 109.47176 * 179.97438 * 15 2 1
18 18 N 1.46497 * 109.47136 * 60.00226 * 15 2 1
19 19 C 1.34954 * 126.03877 * 84.71269 * 18 15 2
20 20 C 1.35314 * 107.74684 * 179.84109 * 19 18 15
21 21 C 1.39870 * 107.91736 * 0.42338 * 20 19 18
22 22 N 1.30836 * 108.20572 * 359.74137 * 21 20 19
23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3
24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3
25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3
26 26 H 1.00908 * 110.99583 * 38.95067 * 4 2 1
27 27 H 1.09002 * 109.47043 * 299.99792 * 5 4 2
28 28 H 1.09001 * 109.47354 * 59.99854 * 5 4 2
29 29 H 1.09002 * 109.47153 * 300.00004 * 6 5 4
30 30 H 1.08998 * 109.47533 * 59.99633 * 6 5 4
31 31 H 0.97002 * 119.99731 * 180.02562 * 10 9 7
32 32 H 1.09002 * 109.46869 * 60.00447 * 17 15 2
33 33 H 1.09001 * 109.47091 * 180.02562 * 17 15 2
34 34 H 1.08994 * 109.47388 * 300.00369 * 17 15 2
35 35 H 1.08004 * 126.12316 * 0.02562 * 19 18 15
36 36 H 1.08000 * 126.03944 * 180.16103 * 20 19 18
37 37 H 1.08005 * 125.89903 * 179.70995 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0197 -0.6925 1.1995
5 6 2.0824 0.2226 2.3469
6 6 2.5950 -0.5331 3.5745
7 6 2.6600 0.4058 4.7515
8 1 2.3648 1.4382 4.6356
9 6 3.0954 -0.0534 5.9765
10 7 3.4544 -1.3107 6.1176
11 14 3.1767 1.1106 7.4352
12 1 1.8212 1.6489 7.7149
13 1 3.6729 0.3768 8.6270
14 1 4.0997 2.2312 7.1235
15 6 2.0399 -0.7213 -1.2492
16 1 1.6766 -1.7490 -1.2492
17 6 3.5700 -0.7208 -1.2495
18 7 1.5516 -0.0307 -2.4454
19 6 2.1268 1.0379 -3.0356
20 6 1.3737 1.3711 -4.1093
21 6 0.2962 0.4815 -4.1719
22 7 0.4018 -0.3592 -3.1750
23 1 -0.3633 0.5139 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3634 -1.0277 0.0005
26 1 1.4494 -1.4979 1.4101
27 1 2.7588 1.0462 2.1182
28 1 1.0870 0.6163 2.5526
29 1 1.9183 -1.3565 3.8030
30 1 3.5903 -0.9272 3.3692
31 1 3.7603 -1.6339 6.9796
32 1 3.9337 -1.2344 -0.3595
33 1 3.9333 -1.2342 -2.1397
34 1 3.9330 0.3070 -1.2498
35 1 3.0286 1.5359 -2.7110
36 1 1.5678 2.1833 -4.7942
37 1 -0.4879 0.4877 -4.9146
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000071882137.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:35
Heat of formation + Delta-G solvation = 46.811918 kcal
Electronic energy + Delta-G solvation = -16634.056614 eV
Core-core repulsion = 14025.895414 eV
Total energy + Delta-G solvation = -2608.161200 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 237.154 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-42.10196 -38.86589 -35.93755 -34.54719 -32.17538 -30.86098 -30.19188 -29.42875
-26.10975 -24.94908 -22.79461 -22.54725 -21.85552 -20.62418 -18.53351 -18.05562
-16.80305 -16.35740 -16.28137 -15.84976 -15.17339 -14.85393 -14.71028 -14.33161
-14.18937 -13.96676 -13.54529 -13.44207 -13.13269 -13.05632 -12.82941 -12.62365
-12.48432 -12.24457 -11.97585 -11.92504 -11.54391 -11.41063 -11.28359 -10.55514
-10.32303 -9.54259 -9.26040 -8.20067 -6.31188 1.05506 1.40878 1.43400
1.51362 1.59824 2.02999 2.40796 3.13770 3.30907 3.47894 3.84954
4.02280 4.05286 4.13298 4.33583 4.35028 4.48574 4.58890 4.66715
4.76598 4.79828 4.88460 4.93203 5.00175 5.06011 5.11070 5.22029
5.33782 5.44848 5.68418 5.76519 5.84881 6.07939 6.19087 6.25184
6.46332 6.85997 6.87556 7.38092 8.91664
Molecular weight = 237.15amu
Principal moments of inertia in cm(-1)
A = 0.053109 B = 0.004150 C = 0.004110
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 527.087298 B = 6745.299528 C = 6810.495707
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.081 3.919
3 H 0.076 0.924
4 N -0.677 5.677
5 C 0.089 3.911
6 C 0.032 3.968
7 C -0.546 4.546
8 H 0.059 0.941
9 C 0.003 3.997
10 N -0.931 5.931
11 Si 0.964 3.036
12 H -0.268 1.268
13 H -0.283 1.283
14 H -0.266 1.266
15 C 0.174 3.826
16 H 0.092 0.908
17 C -0.145 4.145
18 N -0.367 5.367
19 C 0.049 3.951
20 C -0.285 4.285
21 C 0.033 3.967
22 N -0.336 5.336
23 H 0.049 0.951
24 H 0.056 0.944
25 H 0.058 0.942
26 H 0.342 0.658
27 H 0.061 0.939
28 H 0.017 0.983
29 H -0.009 1.009
30 H -0.001 1.001
31 H 0.264 0.736
32 H 0.087 0.913
33 H 0.065 0.935
34 H 0.069 0.931
35 H 0.192 0.808
36 H 0.167 0.833
37 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.902 4.787 -18.768 19.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.030 4.030
3 H 0.095 0.905
4 N -0.308 5.308
5 C -0.040 4.040
6 C -0.005 4.005
7 C -0.584 4.584
8 H 0.077 0.923
9 C -0.195 4.195
10 N -0.570 5.570
11 Si 0.788 3.212
12 H -0.193 1.193
13 H -0.209 1.209
14 H -0.191 1.191
15 C 0.071 3.929
16 H 0.110 0.890
17 C -0.203 4.203
18 N -0.150 5.150
19 C -0.097 4.097
20 C -0.314 4.314
21 C -0.152 4.152
22 N -0.157 5.157
23 H 0.068 0.932
24 H 0.075 0.925
25 H 0.077 0.923
26 H 0.160 0.840
27 H 0.079 0.921
28 H 0.035 0.965
29 H 0.009 0.991
30 H 0.018 0.982
31 H 0.072 0.928
32 H 0.105 0.895
33 H 0.084 0.916
34 H 0.088 0.912
35 H 0.209 0.791
36 H 0.185 0.815
37 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -2.633 3.660 -18.095 18.648
hybrid contribution -0.598 1.026 0.814 1.440
sum -3.232 4.686 -17.282 18.195
Atomic orbital electron populations
1.22327 0.96709 1.02207 1.01470 1.21809 0.93176 0.97919 0.90105
0.90543 1.60482 1.56814 1.09913 1.03584 1.21777 0.97925 0.94804
0.89512 1.18908 0.95152 0.94746 0.91701 1.21582 1.44120 0.97012
0.95698 0.92266 1.25930 0.94781 0.96772 1.02056 1.70094 1.45179
1.16323 1.25451 0.85521 0.78872 0.78770 0.78005 1.19341 1.20864
1.19095 1.21136 0.95834 0.96005 0.79898 0.88966 1.21995 0.91123
1.03644 1.03569 1.48941 1.19221 1.24391 1.22436 1.23021 1.00676
0.90749 0.95255 1.21822 0.99112 1.06994 1.03459 1.24388 1.00017
0.93713 0.97118 1.77322 1.03985 1.25626 1.08815 0.93225 0.92483
0.92294 0.83999 0.92062 0.96516 0.99065 0.98222 0.92753 0.89452
0.91567 0.91217 0.79125 0.81534 0.77943
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.64 8.97 71.98 0.65 -4.00 16
2 C 0.08 2.22 2.35 44.91 0.11 2.32 16
3 H 0.08 2.14 7.80 -2.39 -0.02 2.12 16
4 N -0.68 -22.08 5.49 -491.59 -2.70 -24.78 16
5 C 0.09 3.55 5.42 86.30 0.47 4.02 16
6 C 0.03 1.68 5.23 29.85 0.16 1.83 16
7 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16
8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16
9 C 0.00 0.16 5.46 84.65 0.46 0.62 16
10 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16
11 Si 0.96 43.79 29.54 68.60 2.03 45.82 16
12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16
13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
15 C 0.17 4.22 3.09 44.99 0.14 4.36 16
16 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16
17 C -0.15 -3.12 8.68 71.98 0.62 -2.50 16
18 N -0.37 -8.89 2.89 -327.49 -0.95 -9.83 16
19 C 0.05 0.99 10.59 83.54 0.88 1.88 16
20 C -0.28 -5.29 10.80 21.99 0.24 -5.05 16
21 C 0.03 0.69 12.02 85.24 1.02 1.71 16
22 N -0.34 -8.88 11.90 -57.02 -0.68 -9.56 16
23 H 0.05 1.43 7.45 -2.39 -0.02 1.42 16
24 H 0.06 1.60 7.04 -2.39 -0.02 1.59 16
25 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16
26 H 0.34 11.12 8.47 -89.69 -0.76 10.36 16
27 H 0.06 2.43 8.06 -2.39 -0.02 2.41 16
28 H 0.02 0.67 7.44 -2.39 -0.02 0.65 16
29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16
30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16
31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16
32 H 0.09 2.16 7.60 -2.39 -0.02 2.14 16
33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16
34 H 0.07 1.35 7.16 -2.39 -0.02 1.33 16
35 H 0.19 2.79 7.27 -2.91 -0.02 2.77 16
36 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16
37 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16
Total: -1.00 -64.81 307.31 3.25 -61.56
By element:
Atomic # 1 Polarization: 17.68 SS G_CDS: 0.28 Total: 17.95 kcal
Atomic # 6 Polarization: -30.22 SS G_CDS: 4.98 Total: -25.24 kcal
Atomic # 7 Polarization: -96.06 SS G_CDS: -4.04 Total: -100.09 kcal
Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal
Total: -64.81 3.25 -61.56 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000071882137.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.369 kcal
(2) G-P(sol) polarization free energy of solvation -64.808 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.557 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.812 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds