Wall clock time and date at job start Sun Mar 29 2020 21:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46756 * 59.99920 * 11 9 7 13 13 H 1.48490 * 109.47381 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47117 * 300.00527 * 11 9 7 15 15 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 16 16 H 1.08998 * 109.47564 * 299.99943 * 15 2 1 17 17 C 1.53007 * 109.47176 * 179.97438 * 15 2 1 18 18 N 1.46497 * 109.47136 * 60.00226 * 15 2 1 19 19 C 1.34954 * 126.03877 * 84.71269 * 18 15 2 20 20 C 1.35314 * 107.74684 * 179.84109 * 19 18 15 21 21 C 1.39870 * 107.91736 * 0.42338 * 20 19 18 22 22 N 1.30836 * 108.20572 * 359.74137 * 21 20 19 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 29 29 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 30 30 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 31 31 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.46869 * 60.00447 * 17 15 2 33 33 H 1.09001 * 109.47091 * 180.02562 * 17 15 2 34 34 H 1.08994 * 109.47388 * 300.00369 * 17 15 2 35 35 H 1.08004 * 126.12316 * 0.02562 * 19 18 15 36 36 H 1.08000 * 126.03944 * 180.16103 * 20 19 18 37 37 H 1.08005 * 125.89903 * 179.70995 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6600 0.4058 4.7515 8 1 2.3648 1.4382 4.6356 9 6 3.0954 -0.0534 5.9765 10 7 3.4544 -1.3107 6.1176 11 14 3.1767 1.1106 7.4352 12 1 1.8212 1.6489 7.7149 13 1 3.6729 0.3768 8.6270 14 1 4.0997 2.2312 7.1235 15 6 2.0399 -0.7213 -1.2492 16 1 1.6766 -1.7490 -1.2492 17 6 3.5700 -0.7208 -1.2495 18 7 1.5516 -0.0307 -2.4454 19 6 2.1268 1.0379 -3.0356 20 6 1.3737 1.3711 -4.1093 21 6 0.2962 0.4815 -4.1719 22 7 0.4018 -0.3592 -3.1750 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.4494 -1.4979 1.4101 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6163 2.5526 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9272 3.3692 31 1 3.7603 -1.6339 6.9796 32 1 3.9337 -1.2344 -0.3595 33 1 3.9333 -1.2342 -2.1397 34 1 3.9330 0.3070 -1.2498 35 1 3.0286 1.5359 -2.7110 36 1 1.5678 2.1833 -4.7942 37 1 -0.4879 0.4877 -4.9146 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071882137.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:35 Heat of formation + Delta-G solvation = 46.811918 kcal Electronic energy + Delta-G solvation = -16634.056614 eV Core-core repulsion = 14025.895414 eV Total energy + Delta-G solvation = -2608.161200 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.10196 -38.86589 -35.93755 -34.54719 -32.17538 -30.86098 -30.19188 -29.42875 -26.10975 -24.94908 -22.79461 -22.54725 -21.85552 -20.62418 -18.53351 -18.05562 -16.80305 -16.35740 -16.28137 -15.84976 -15.17339 -14.85393 -14.71028 -14.33161 -14.18937 -13.96676 -13.54529 -13.44207 -13.13269 -13.05632 -12.82941 -12.62365 -12.48432 -12.24457 -11.97585 -11.92504 -11.54391 -11.41063 -11.28359 -10.55514 -10.32303 -9.54259 -9.26040 -8.20067 -6.31188 1.05506 1.40878 1.43400 1.51362 1.59824 2.02999 2.40796 3.13770 3.30907 3.47894 3.84954 4.02280 4.05286 4.13298 4.33583 4.35028 4.48574 4.58890 4.66715 4.76598 4.79828 4.88460 4.93203 5.00175 5.06011 5.11070 5.22029 5.33782 5.44848 5.68418 5.76519 5.84881 6.07939 6.19087 6.25184 6.46332 6.85997 6.87556 7.38092 8.91664 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053109 B = 0.004150 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.087298 B = 6745.299528 C = 6810.495707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 H 0.076 0.924 4 N -0.677 5.677 5 C 0.089 3.911 6 C 0.032 3.968 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.003 3.997 10 N -0.931 5.931 11 Si 0.964 3.036 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.174 3.826 16 H 0.092 0.908 17 C -0.145 4.145 18 N -0.367 5.367 19 C 0.049 3.951 20 C -0.285 4.285 21 C 0.033 3.967 22 N -0.336 5.336 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.342 0.658 27 H 0.061 0.939 28 H 0.017 0.983 29 H -0.009 1.009 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.192 0.808 36 H 0.167 0.833 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 4.787 -18.768 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.030 4.030 3 H 0.095 0.905 4 N -0.308 5.308 5 C -0.040 4.040 6 C -0.005 4.005 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.195 4.195 10 N -0.570 5.570 11 Si 0.788 3.212 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.191 1.191 15 C 0.071 3.929 16 H 0.110 0.890 17 C -0.203 4.203 18 N -0.150 5.150 19 C -0.097 4.097 20 C -0.314 4.314 21 C -0.152 4.152 22 N -0.157 5.157 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.160 0.840 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.009 0.991 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.209 0.791 36 H 0.185 0.815 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.633 3.660 -18.095 18.648 hybrid contribution -0.598 1.026 0.814 1.440 sum -3.232 4.686 -17.282 18.195 Atomic orbital electron populations 1.22327 0.96709 1.02207 1.01470 1.21809 0.93176 0.97919 0.90105 0.90543 1.60482 1.56814 1.09913 1.03584 1.21777 0.97925 0.94804 0.89512 1.18908 0.95152 0.94746 0.91701 1.21582 1.44120 0.97012 0.95698 0.92266 1.25930 0.94781 0.96772 1.02056 1.70094 1.45179 1.16323 1.25451 0.85521 0.78872 0.78770 0.78005 1.19341 1.20864 1.19095 1.21136 0.95834 0.96005 0.79898 0.88966 1.21995 0.91123 1.03644 1.03569 1.48941 1.19221 1.24391 1.22436 1.23021 1.00676 0.90749 0.95255 1.21822 0.99112 1.06994 1.03459 1.24388 1.00017 0.93713 0.97118 1.77322 1.03985 1.25626 1.08815 0.93225 0.92483 0.92294 0.83999 0.92062 0.96516 0.99065 0.98222 0.92753 0.89452 0.91567 0.91217 0.79125 0.81534 0.77943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 8.97 71.98 0.65 -4.00 16 2 C 0.08 2.22 2.35 44.91 0.11 2.32 16 3 H 0.08 2.14 7.80 -2.39 -0.02 2.12 16 4 N -0.68 -22.08 5.49 -491.59 -2.70 -24.78 16 5 C 0.09 3.55 5.42 86.30 0.47 4.02 16 6 C 0.03 1.68 5.23 29.85 0.16 1.83 16 7 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.00 0.16 5.46 84.65 0.46 0.62 16 10 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 11 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 15 C 0.17 4.22 3.09 44.99 0.14 4.36 16 16 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.15 -3.12 8.68 71.98 0.62 -2.50 16 18 N -0.37 -8.89 2.89 -327.49 -0.95 -9.83 16 19 C 0.05 0.99 10.59 83.54 0.88 1.88 16 20 C -0.28 -5.29 10.80 21.99 0.24 -5.05 16 21 C 0.03 0.69 12.02 85.24 1.02 1.71 16 22 N -0.34 -8.88 11.90 -57.02 -0.68 -9.56 16 23 H 0.05 1.43 7.45 -2.39 -0.02 1.42 16 24 H 0.06 1.60 7.04 -2.39 -0.02 1.59 16 25 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 26 H 0.34 11.12 8.47 -89.69 -0.76 10.36 16 27 H 0.06 2.43 8.06 -2.39 -0.02 2.41 16 28 H 0.02 0.67 7.44 -2.39 -0.02 0.65 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.09 2.16 7.60 -2.39 -0.02 2.14 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.35 7.16 -2.39 -0.02 1.33 16 35 H 0.19 2.79 7.27 -2.91 -0.02 2.77 16 36 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -64.81 307.31 3.25 -61.56 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.28 Total: 17.95 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 4.98 Total: -25.24 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -4.04 Total: -100.09 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -64.81 3.25 -61.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071882137.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.369 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds