Wall clock time and date at job start Sun Mar 29 2020 21:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47558 * 269.97614 * 6 5 4 8 8 C 1.46900 * 111.00023 * 293.95500 * 7 6 5 9 9 C 1.46897 * 111.00074 * 170.00111 * 7 6 5 10 10 C 1.53001 * 109.46854 * 190.00320 * 9 7 6 11 11 C 1.50705 * 109.47244 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99656 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00295 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99395 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99917 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47200 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47132 * 119.99918 * 15 13 11 18 18 H 1.48498 * 109.46940 * 239.99590 * 15 13 11 19 19 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 20 20 N 1.30844 * 108.19764 * 359.97438 * 19 5 4 21 21 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 23 23 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 24 24 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 25 25 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 26 26 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 28 28 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 29 29 H 1.09009 * 109.46985 * 59.99497 * 8 7 6 30 30 H 1.08994 * 109.47451 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47131 * 300.00411 * 8 7 6 32 32 H 1.08999 * 109.47292 * 309.99695 * 9 7 6 33 33 H 1.08998 * 109.47344 * 70.00070 * 9 7 6 34 34 H 1.09005 * 109.47202 * 299.99329 * 10 9 7 35 35 H 1.09002 * 109.47811 * 59.99572 * 10 9 7 36 36 H 0.97009 * 119.99457 * 179.97438 * 14 13 11 37 37 H 1.07995 * 125.89923 * 180.25722 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 7 3.1730 4.8993 2.2931 8 6 2.1353 5.7408 1.6824 9 6 4.0451 5.6921 3.1700 10 6 3.2385 6.2011 4.3663 11 6 4.1329 7.0150 5.2656 12 1 5.1728 7.1548 5.0096 13 6 3.6237 7.5811 6.4151 14 7 2.3573 7.4112 6.7264 15 14 4.7327 8.5893 7.5301 16 1 6.1035 8.6285 6.9605 17 1 4.2012 9.9717 7.6379 18 1 4.7748 7.9687 8.8785 19 6 2.3129 3.4723 -0.6000 20 7 1.6811 2.3745 -0.9282 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.3184 1.4127 1.7364 27 1 4.7828 3.6692 1.7373 28 1 4.3482 4.9239 0.5519 29 1 1.4618 5.1175 1.0941 30 1 1.5706 6.2470 2.4652 31 1 2.6033 6.4819 1.0344 32 1 4.8668 5.0697 3.5242 33 1 4.4451 6.5401 2.6141 34 1 2.4167 6.8236 4.0121 35 1 2.8384 5.3531 4.9222 36 1 1.9991 7.8091 7.5353 37 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072980679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:21 Heat of formation + Delta-G solvation = 73.386656 kcal Electronic energy + Delta-G solvation = -16404.279060 eV Core-core repulsion = 13797.270227 eV Total energy + Delta-G solvation = -2607.008833 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.11072 -37.02947 -34.50062 -33.01924 -30.90944 -30.14640 -28.86424 -26.51298 -25.08137 -23.83359 -22.36547 -20.60268 -19.89309 -19.70143 -16.89246 -16.38662 -15.53454 -14.85362 -14.58055 -14.52139 -14.20608 -14.05788 -13.55274 -12.94667 -12.77499 -12.36421 -12.27793 -12.10965 -11.99062 -11.50399 -11.45884 -11.01501 -10.98986 -10.83506 -10.52777 -10.31138 -9.79635 -9.36827 -9.28736 -9.06641 -8.30952 -8.26172 -7.55993 -5.95830 -3.97868 2.00402 2.55087 2.91820 3.33456 3.40793 3.44871 4.38234 4.47527 4.76309 4.85240 4.91312 4.99297 5.07893 5.32653 5.40060 5.50764 5.55618 5.60740 5.85721 5.90147 5.96814 6.02198 6.09679 6.34759 6.39527 6.56440 6.63397 6.76708 7.04688 7.10932 7.61667 7.67373 7.80325 7.87608 7.97493 8.15074 8.48835 9.10053 9.65532 11.15604 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045330 B = 0.004131 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.543041 B = 6776.362021 C = 6968.901242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.378 5.378 4 C 0.069 3.931 5 C -0.220 4.220 6 C 0.129 3.871 7 N -0.539 5.539 8 C 0.029 3.971 9 C 0.063 3.937 10 C 0.027 3.973 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.053 3.947 20 N -0.303 5.303 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.172 0.828 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.015 0.985 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.023 0.977 36 H 0.259 0.741 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 -13.161 -13.578 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.162 5.162 4 C -0.077 4.077 5 C -0.231 4.231 6 C 0.001 3.999 7 N -0.263 5.263 8 C -0.120 4.120 9 C -0.064 4.064 10 C -0.010 4.010 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.134 4.134 20 N -0.124 5.124 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.189 0.811 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.735 -14.180 -13.978 19.987 hybrid contribution 1.451 1.580 0.847 2.306 sum -0.285 -12.601 -13.131 18.201 Atomic orbital electron populations 1.22053 0.93949 1.02591 1.03727 1.21609 0.96014 0.77802 1.03389 1.48595 1.36007 1.09987 1.21572 1.22324 0.95114 0.94879 0.95401 1.20022 1.08141 0.94861 1.00095 1.20309 0.93487 0.93862 0.92291 1.62109 1.14680 1.30677 1.18845 1.22354 0.95450 0.95348 0.98825 1.22338 0.95383 0.94008 0.94689 1.19105 0.95071 0.95955 0.90889 1.21258 0.96313 1.31637 1.06685 0.92755 1.24998 0.94996 0.96573 0.97810 1.69993 1.12884 1.45054 1.25364 0.86553 0.80892 0.79969 0.80675 1.19772 1.21076 1.21033 1.23751 0.95869 0.97159 0.96597 1.77233 1.23917 0.97086 1.14143 0.90951 0.91873 0.91227 0.90215 0.88781 0.81076 0.90796 0.94850 0.92476 0.90709 0.96629 0.92240 0.96305 0.96453 0.95819 0.93117 0.80629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.10 37.16 0.38 -0.99 16 2 C 0.13 1.12 7.23 -4.04 -0.03 1.09 16 3 N -0.38 -4.71 3.68 -61.37 -0.23 -4.94 16 4 C 0.07 0.89 11.36 -17.22 -0.20 0.69 16 5 C -0.22 -3.13 4.95 -105.05 -0.52 -3.65 16 6 C 0.13 1.97 5.45 -4.98 -0.03 1.95 16 7 N -0.54 -10.08 4.75 -244.37 -1.16 -11.24 16 8 C 0.03 0.51 9.09 60.06 0.55 1.06 16 9 C 0.06 1.34 4.90 -3.82 -0.02 1.32 16 10 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 11 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 12 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.05 0.73 10.62 -17.36 -0.18 0.55 16 20 N -0.30 -4.35 12.42 30.62 0.38 -3.97 16 21 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 26 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.07 1.07 7.93 -51.93 -0.41 0.65 16 28 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.06 0.94 6.32 -51.92 -0.33 0.61 16 30 H 0.07 1.49 6.30 -51.93 -0.33 1.16 16 31 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 33 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.02 0.48 6.47 -51.93 -0.34 0.15 16 35 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.18 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -32.56 308.45 -7.25 -39.81 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.00 Total: -3.60 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -0.60 Total: -11.03 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.27 Total: -46.59 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.56 -7.25 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072980679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.194 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds