Wall clock time and date at job start Sun Mar 29 2020 21:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47558 * 269.97614 * 6 5 4 8 8 C 1.46900 * 111.00023 * 293.95500 * 7 6 5 9 9 C 1.46897 * 111.00074 * 170.00111 * 7 6 5 10 10 C 1.53001 * 109.46854 * 190.00320 * 9 7 6 11 11 C 1.50705 * 109.47244 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99656 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00295 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99395 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99917 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47200 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47132 * 119.99918 * 15 13 11 18 18 H 1.48498 * 109.46940 * 239.99590 * 15 13 11 19 19 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 20 20 N 1.30844 * 108.19764 * 359.97438 * 19 5 4 21 21 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 23 23 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 24 24 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 25 25 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 26 26 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 28 28 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 29 29 H 1.09009 * 109.46985 * 59.99497 * 8 7 6 30 30 H 1.08994 * 109.47451 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47131 * 300.00411 * 8 7 6 32 32 H 1.08999 * 109.47292 * 309.99695 * 9 7 6 33 33 H 1.08998 * 109.47344 * 70.00070 * 9 7 6 34 34 H 1.09005 * 109.47202 * 299.99329 * 10 9 7 35 35 H 1.09002 * 109.47811 * 59.99572 * 10 9 7 36 36 H 0.97009 * 119.99457 * 179.97438 * 14 13 11 37 37 H 1.07995 * 125.89923 * 180.25722 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 7 3.1730 4.8993 2.2931 8 6 2.1353 5.7408 1.6824 9 6 4.0451 5.6921 3.1700 10 6 3.2385 6.2011 4.3663 11 6 4.1329 7.0150 5.2656 12 1 5.1728 7.1548 5.0096 13 6 3.6237 7.5811 6.4151 14 7 2.3573 7.4112 6.7264 15 14 4.7327 8.5893 7.5301 16 1 6.1035 8.6285 6.9605 17 1 4.2012 9.9717 7.6379 18 1 4.7748 7.9687 8.8785 19 6 2.3129 3.4723 -0.6000 20 7 1.6811 2.3745 -0.9282 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.3184 1.4127 1.7364 27 1 4.7828 3.6692 1.7373 28 1 4.3482 4.9239 0.5519 29 1 1.4618 5.1175 1.0941 30 1 1.5706 6.2470 2.4652 31 1 2.6033 6.4819 1.0344 32 1 4.8668 5.0697 3.5242 33 1 4.4451 6.5401 2.6141 34 1 2.4167 6.8236 4.0121 35 1 2.8384 5.3531 4.9222 36 1 1.9991 7.8091 7.5353 37 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072980679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:21 Heat of formation + Delta-G solvation = 51.974969 kcal Electronic energy + Delta-G solvation = -16405.207541 eV Core-core repulsion = 13797.270227 eV Total energy + Delta-G solvation = -2607.937314 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.10459 -38.51954 -35.50410 -34.95430 -32.39083 -31.22352 -30.33439 -27.91311 -26.77340 -24.84706 -23.90267 -21.67490 -21.43242 -20.84254 -18.55502 -17.78801 -16.58996 -16.49814 -16.16087 -15.98505 -15.38867 -15.10576 -14.66844 -14.40808 -14.16124 -13.73767 -13.68100 -13.20049 -13.02195 -12.95690 -12.84913 -12.50971 -12.50198 -12.37113 -12.20322 -11.75518 -11.46405 -11.26258 -11.15344 -10.51512 -10.28388 -9.37138 -8.99605 -8.16972 -6.28045 1.01843 1.42435 1.42718 1.56203 1.70636 1.84482 2.43382 3.16524 3.40426 3.61537 4.03884 4.12167 4.18116 4.35044 4.36529 4.42198 4.46569 4.57590 4.69508 4.77489 4.80622 4.85559 4.89729 5.01618 5.08361 5.16736 5.24137 5.31526 5.50926 5.72097 5.74861 5.83826 6.15605 6.21957 6.39931 6.41743 6.79764 6.90218 7.41053 8.95414 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045330 B = 0.004131 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.543041 B = 6776.362021 C = 6968.901242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 N -0.377 5.377 4 C 0.072 3.928 5 C -0.242 4.242 6 C 0.136 3.864 7 N -0.551 5.551 8 C 0.036 3.964 9 C 0.079 3.921 10 C 0.035 3.965 11 C -0.541 4.541 12 H 0.062 0.938 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.260 1.260 17 H -0.279 1.279 18 H -0.278 1.278 19 C 0.046 3.954 20 N -0.328 5.328 21 H 0.100 0.900 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.195 0.805 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.021 0.979 34 H -0.008 1.008 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -14.012 -13.833 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.003 3.997 3 N -0.160 5.160 4 C -0.076 4.076 5 C -0.253 4.253 6 C 0.008 3.992 7 N -0.275 5.275 8 C -0.112 4.112 9 C -0.048 4.048 10 C -0.003 4.003 11 C -0.580 4.580 12 H 0.080 0.920 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.184 1.184 17 H -0.205 1.205 18 H -0.204 1.204 19 C -0.140 4.140 20 N -0.150 5.150 21 H 0.119 0.881 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.140 0.860 26 H 0.212 0.788 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.071 0.929 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.421 -15.053 -14.265 20.743 hybrid contribution 0.975 1.745 0.889 2.188 sum 0.554 -13.308 -13.376 18.876 Atomic orbital electron populations 1.22013 0.93959 1.03904 1.01913 1.22015 0.96030 0.76137 1.05517 1.48953 1.35372 1.10904 1.20754 1.22735 0.94489 0.94729 0.95610 1.20002 1.09214 0.95392 1.00729 1.20284 0.93491 0.93929 0.91530 1.62028 1.14878 1.30266 1.20357 1.22240 0.95356 0.95651 0.97948 1.21979 0.94900 0.94495 0.93430 1.18944 0.94734 0.94184 0.92417 1.21689 0.96925 1.31989 1.07390 0.92007 1.25977 0.96512 0.97761 0.99554 1.70134 1.14947 1.46184 1.26117 0.85376 0.79148 0.78040 0.78323 1.18399 1.20519 1.20388 1.24002 0.95626 0.97687 0.96704 1.77188 1.24667 0.97779 1.15323 0.88102 0.93559 0.93047 0.88730 0.86016 0.78765 0.89818 0.94027 0.91120 0.93733 0.95410 0.91429 0.96127 0.98958 0.99108 0.92863 0.79423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.10 71.98 0.73 -1.66 16 2 C 0.12 1.78 7.23 86.38 0.62 2.40 16 3 N -0.38 -8.74 3.68 -348.07 -1.28 -10.02 16 4 C 0.07 1.71 11.36 83.54 0.95 2.66 16 5 C -0.24 -6.53 4.95 -20.14 -0.10 -6.63 16 6 C 0.14 3.93 5.45 85.56 0.47 4.39 16 7 N -0.55 -20.35 4.75 -927.04 -4.41 -24.75 16 8 C 0.04 1.30 9.09 127.69 1.16 2.46 16 9 C 0.08 3.38 4.90 86.30 0.42 3.81 16 10 C 0.03 1.88 4.90 29.85 0.15 2.03 16 11 C -0.54 -31.20 9.11 25.60 0.23 -30.96 16 12 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 13 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 14 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 15 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 C 0.05 1.22 10.62 85.23 0.91 2.12 16 20 N -0.33 -9.10 12.42 -57.02 -0.71 -9.81 16 21 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.12 1.10 8.07 -2.39 -0.02 1.08 16 26 H 0.20 3.55 8.06 -2.91 -0.02 3.52 16 27 H 0.08 2.24 7.93 -2.39 -0.02 2.22 16 28 H 0.04 1.14 8.12 -2.38 -0.02 1.12 16 29 H 0.07 2.31 6.32 -2.38 -0.02 2.29 16 30 H 0.04 1.84 6.30 -2.39 -0.02 1.82 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 33 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 34 H -0.01 -0.46 6.47 -2.38 -0.02 -0.48 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 37 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -70.44 308.45 2.94 -67.51 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.02 Total: 6.96 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 6.00 Total: -18.95 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -6.11 Total: -102.09 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.44 2.94 -67.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072980679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.482 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds