Wall clock time and date at job start Sun Mar 29 2020 21:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48491 * 109.47307 * 270.00121 * 3 2 1 5 5 H 1.48509 * 109.46884 * 30.00364 * 3 2 1 6 6 H 1.48501 * 109.47244 * 149.99661 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00002 * 159.36563 * 7 2 1 9 9 N 1.36946 * 120.00264 * 339.35442 * 7 2 1 10 10 C 1.46495 * 119.99655 * 321.66527 * 9 7 2 11 11 C 1.53002 * 109.47475 * 269.99587 * 10 9 7 12 12 C 1.54265 * 110.03117 * 292.91280 * 11 10 9 13 13 C 1.54958 * 104.15982 * 217.13355 * 12 11 10 14 14 C 1.54896 * 102.77912 * 37.88840 * 13 12 11 15 15 C 1.53867 * 110.03363 * 175.69349 * 11 10 9 16 16 C 1.46494 * 119.99747 * 141.66312 * 9 7 2 17 17 C 1.54958 * 110.92610 * 304.84755 * 16 9 7 18 18 C 1.54270 * 104.16169 * 156.30026 * 17 16 9 19 19 C 1.53872 * 106.63924 * 336.44048 * 18 17 16 20 20 C 1.54272 * 106.59769 * 359.97438 * 19 18 17 21 21 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47637 * 30.00269 * 10 9 7 23 23 H 1.09002 * 109.47095 * 149.99962 * 10 9 7 24 24 H 1.09005 * 110.01232 * 54.30364 * 11 10 9 25 25 H 1.08999 * 110.48724 * 335.78368 * 12 11 10 26 26 H 1.08995 * 110.48639 * 98.42562 * 12 11 10 27 27 H 1.09004 * 110.72569 * 279.57830 * 13 12 11 28 28 H 1.09003 * 110.92794 * 156.29566 * 13 12 11 29 29 H 1.09002 * 110.48513 * 203.40643 * 14 13 12 30 30 H 1.08994 * 110.59627 * 80.81735 * 14 13 12 31 31 H 1.09004 * 110.03240 * 238.56986 * 15 11 10 32 32 H 1.09001 * 110.03591 * 0.02562 * 15 11 10 33 33 H 1.09003 * 110.66972 * 181.53915 * 16 9 7 34 34 H 1.09000 * 110.47907 * 37.64131 * 17 16 9 35 35 H 1.09000 * 110.52787 * 274.97558 * 17 16 9 36 36 H 1.09001 * 110.02840 * 217.13445 * 18 17 16 37 37 H 1.08991 * 110.03312 * 95.75480 * 18 17 16 38 38 H 1.09000 * 110.03394 * 119.25991 * 19 18 17 39 39 H 1.08996 * 110.03599 * 240.65051 * 19 18 17 40 40 H 1.09000 * 110.49106 * 142.28511 * 20 19 18 41 41 H 1.09001 * 110.48185 * 264.79603 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0382 -1.2321 -0.3302 9 7 1.3914 -2.3503 0.4171 10 6 0.4666 -2.3123 1.5526 11 6 1.2400 -2.5619 2.8489 12 6 1.7757 -4.0084 2.8745 13 6 1.6358 -4.4383 4.3566 14 6 0.2971 -3.7832 4.7785 15 6 0.3006 -2.4185 4.0591 16 6 1.6542 -3.6161 -0.2717 17 6 1.3686 -3.4901 -1.7895 18 6 2.2282 -4.6002 -2.4288 19 6 3.3694 -4.8980 -1.4406 20 6 3.1646 -3.9579 -0.2346 21 1 -0.4849 0.8401 0.0004 22 1 -0.0131 -1.3346 1.5982 23 1 -0.2931 -3.0842 1.4285 24 1 2.0665 -1.8561 2.9320 25 1 1.1721 -4.6501 2.2327 26 1 2.8208 -4.0336 2.5662 27 1 2.4614 -4.0472 4.9513 28 1 1.5791 -5.5234 4.4436 29 1 0.2641 -3.6447 5.8592 30 1 -0.5469 -4.3874 4.4463 31 1 0.6717 -1.6437 4.7301 32 1 -0.7064 -2.1715 3.7230 33 1 1.0649 -4.4219 0.1660 34 1 1.6767 -2.5106 -2.1554 35 1 0.3118 -3.6600 -1.9950 36 1 2.6371 -4.2554 -3.3785 37 1 1.6262 -5.4953 -2.5848 38 1 3.3207 -5.9374 -1.1162 39 1 4.3322 -4.6985 -1.9109 40 1 3.4173 -4.4686 0.6945 41 1 3.7651 -3.0553 -0.3483 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:32 Heat of formation + Delta-G solvation = -13.925855 kcal Electronic energy + Delta-G solvation = -18195.501079 eV Core-core repulsion = 15688.246435 eV Total energy + Delta-G solvation = -2507.254644 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.20857 -36.97697 -34.09129 -31.07424 -29.10658 -28.17207 -27.69526 -26.37680 -24.58314 -21.82966 -20.20956 -19.50670 -19.24362 -18.73911 -16.31466 -15.55909 -14.86993 -14.72590 -14.37303 -14.09594 -13.27634 -12.90223 -12.77143 -12.52707 -12.33988 -11.68870 -11.21764 -10.99926 -10.78502 -10.73642 -10.70575 -10.57190 -10.43538 -10.30518 -10.26199 -10.18475 -10.02143 -9.85364 -9.70486 -9.63936 -9.31847 -9.20324 -8.37520 -6.40479 -5.69005 -3.27859 3.38419 3.46388 3.49550 4.53135 5.15162 5.24117 5.29481 5.36409 5.39542 5.46337 5.54559 5.82579 5.95293 6.06045 6.10417 6.16522 6.23515 6.24558 6.27971 6.29843 6.36776 6.43368 6.47087 6.57783 6.60740 6.65167 6.66518 6.72084 6.81768 6.88163 6.96069 7.10419 7.14642 7.25222 7.38287 7.44212 7.79351 7.92255 8.62932 9.30575 9.93452 10.52507 11.29152 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.012136 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.608172 B = 2306.627255 C = 3687.891448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.012 3.988 3 Si 0.890 3.110 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.058 0.942 9 N -0.574 5.574 10 C 0.156 3.844 11 C -0.108 4.108 12 C -0.107 4.107 13 C -0.127 4.127 14 C -0.122 4.122 15 C -0.119 4.119 16 C 0.175 3.825 17 C -0.131 4.131 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.137 4.137 21 H 0.252 0.748 22 H 0.091 0.909 23 H 0.020 0.980 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 -8.201 3.910 9.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.188 4.188 3 Si 0.720 3.280 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.076 0.924 9 N -0.292 5.292 10 C 0.030 3.970 11 C -0.129 4.129 12 C -0.145 4.145 13 C -0.165 4.165 14 C -0.160 4.160 15 C -0.157 4.157 16 C 0.067 3.933 17 C -0.170 4.170 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.177 4.177 21 H 0.062 0.938 22 H 0.109 0.891 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.112 -8.040 3.904 9.184 hybrid contribution 0.467 0.917 -0.037 1.029 sum 2.578 -7.123 3.866 8.505 Atomic orbital electron populations 1.70000 1.05476 1.25411 1.52135 1.25156 0.94926 0.98463 1.00225 0.86503 0.79587 0.84202 0.77702 1.21441 1.21646 1.20444 1.18863 0.93634 0.85293 1.39988 0.92408 1.43770 1.51551 1.03130 1.30740 1.21031 0.90293 1.01860 0.83805 1.22395 0.98506 0.95614 0.96420 1.22398 1.00618 0.97185 0.94271 1.22547 0.97200 0.98919 0.97834 1.22334 0.97531 0.97223 0.98874 1.22163 1.00395 0.96004 0.97140 1.21350 0.92375 0.88784 0.90789 1.22722 0.97688 0.98484 0.98131 1.22083 0.97164 0.98821 0.98049 1.22056 0.97913 0.98844 0.97088 1.22806 1.00576 0.98569 0.95724 0.93771 0.89108 0.96190 0.91581 0.92411 0.92328 0.92356 0.92775 0.92879 0.92265 0.92996 0.92099 0.93096 0.90417 0.93417 0.93109 0.93247 0.93164 0.93125 0.93147 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 11.48 55.49 0.64 -24.53 16 2 C 0.01 0.33 4.97 -17.43 -0.09 0.24 16 3 Si 0.89 21.48 29.60 -169.99 -5.03 16.44 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.52 7.87 -15.06 -0.12 -6.64 16 8 H 0.06 1.55 6.64 -52.49 -0.35 1.20 16 9 N -0.57 -13.68 2.40 -163.36 -0.39 -14.07 16 10 C 0.16 3.58 4.40 -4.04 -0.02 3.56 16 11 C -0.11 -2.12 3.15 -89.51 -0.28 -2.40 16 12 C -0.11 -1.84 5.36 -25.04 -0.13 -1.97 16 13 C -0.13 -1.85 6.91 -24.70 -0.17 -2.02 16 14 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 15 C -0.12 -2.01 6.46 -25.62 -0.17 -2.18 16 16 C 0.17 3.63 2.54 -65.90 -0.17 3.46 16 17 C -0.13 -2.67 6.37 -25.03 -0.16 -2.83 16 18 C -0.12 -2.04 6.80 -25.61 -0.17 -2.22 16 19 C -0.12 -1.94 6.80 -25.61 -0.17 -2.11 16 20 C -0.14 -2.56 6.37 -25.06 -0.16 -2.72 16 21 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 22 H 0.09 2.38 5.54 -51.93 -0.29 2.09 16 23 H 0.02 0.45 7.82 -51.93 -0.41 0.04 16 24 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 25 H 0.06 1.01 6.57 -51.93 -0.34 0.67 16 26 H 0.06 1.03 6.74 -51.93 -0.35 0.68 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.06 7.67 -51.93 -0.40 0.66 16 33 H 0.05 1.03 6.78 -51.93 -0.35 0.68 16 34 H 0.08 1.81 7.16 -51.93 -0.37 1.44 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.89 6.59 -51.93 -0.34 0.55 16 41 H 0.07 1.43 6.52 -51.93 -0.34 1.09 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -26.91 305.54 -9.49 -36.39 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.32 Total: 0.91 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.98 Total: -19.75 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.25 Total: -38.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.91 -9.49 -36.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.466 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds