Wall clock time and date at job start Sun Mar 29 2020 21:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48491 * 109.47307 * 270.00121 * 3 2 1 5 5 H 1.48509 * 109.46884 * 30.00364 * 3 2 1 6 6 H 1.48501 * 109.47244 * 149.99661 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00002 * 159.36563 * 7 2 1 9 9 N 1.36946 * 120.00264 * 339.35442 * 7 2 1 10 10 C 1.46495 * 119.99655 * 321.66527 * 9 7 2 11 11 C 1.53002 * 109.47475 * 269.99587 * 10 9 7 12 12 C 1.54265 * 110.03117 * 292.91280 * 11 10 9 13 13 C 1.54958 * 104.15982 * 217.13355 * 12 11 10 14 14 C 1.54896 * 102.77912 * 37.88840 * 13 12 11 15 15 C 1.53867 * 110.03363 * 175.69349 * 11 10 9 16 16 C 1.46494 * 119.99747 * 141.66312 * 9 7 2 17 17 C 1.54958 * 110.92610 * 304.84755 * 16 9 7 18 18 C 1.54270 * 104.16169 * 156.30026 * 17 16 9 19 19 C 1.53872 * 106.63924 * 336.44048 * 18 17 16 20 20 C 1.54272 * 106.59769 * 359.97438 * 19 18 17 21 21 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47637 * 30.00269 * 10 9 7 23 23 H 1.09002 * 109.47095 * 149.99962 * 10 9 7 24 24 H 1.09005 * 110.01232 * 54.30364 * 11 10 9 25 25 H 1.08999 * 110.48724 * 335.78368 * 12 11 10 26 26 H 1.08995 * 110.48639 * 98.42562 * 12 11 10 27 27 H 1.09004 * 110.72569 * 279.57830 * 13 12 11 28 28 H 1.09003 * 110.92794 * 156.29566 * 13 12 11 29 29 H 1.09002 * 110.48513 * 203.40643 * 14 13 12 30 30 H 1.08994 * 110.59627 * 80.81735 * 14 13 12 31 31 H 1.09004 * 110.03240 * 238.56986 * 15 11 10 32 32 H 1.09001 * 110.03591 * 0.02562 * 15 11 10 33 33 H 1.09003 * 110.66972 * 181.53915 * 16 9 7 34 34 H 1.09000 * 110.47907 * 37.64131 * 17 16 9 35 35 H 1.09000 * 110.52787 * 274.97558 * 17 16 9 36 36 H 1.09001 * 110.02840 * 217.13445 * 18 17 16 37 37 H 1.08991 * 110.03312 * 95.75480 * 18 17 16 38 38 H 1.09000 * 110.03394 * 119.25991 * 19 18 17 39 39 H 1.08996 * 110.03599 * 240.65051 * 19 18 17 40 40 H 1.09000 * 110.49106 * 142.28511 * 20 19 18 41 41 H 1.09001 * 110.48185 * 264.79603 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0382 -1.2321 -0.3302 9 7 1.3914 -2.3503 0.4171 10 6 0.4666 -2.3123 1.5526 11 6 1.2400 -2.5619 2.8489 12 6 1.7757 -4.0084 2.8745 13 6 1.6358 -4.4383 4.3566 14 6 0.2971 -3.7832 4.7785 15 6 0.3006 -2.4185 4.0591 16 6 1.6542 -3.6161 -0.2717 17 6 1.3686 -3.4901 -1.7895 18 6 2.2282 -4.6002 -2.4288 19 6 3.3694 -4.8980 -1.4406 20 6 3.1646 -3.9579 -0.2346 21 1 -0.4849 0.8401 0.0004 22 1 -0.0131 -1.3346 1.5982 23 1 -0.2931 -3.0842 1.4285 24 1 2.0665 -1.8561 2.9320 25 1 1.1721 -4.6501 2.2327 26 1 2.8208 -4.0336 2.5662 27 1 2.4614 -4.0472 4.9513 28 1 1.5791 -5.5234 4.4436 29 1 0.2641 -3.6447 5.8592 30 1 -0.5469 -4.3874 4.4463 31 1 0.6717 -1.6437 4.7301 32 1 -0.7064 -2.1715 3.7230 33 1 1.0649 -4.4219 0.1660 34 1 1.6767 -2.5106 -2.1554 35 1 0.3118 -3.6600 -1.9950 36 1 2.6371 -4.2554 -3.3785 37 1 1.6262 -5.4953 -2.5848 38 1 3.3207 -5.9374 -1.1162 39 1 4.3322 -4.6985 -1.9109 40 1 3.4173 -4.4686 0.6945 41 1 3.7651 -3.0553 -0.3483 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:31 Heat of formation + Delta-G solvation = -26.015568 kcal Electronic energy + Delta-G solvation = -18196.025329 eV Core-core repulsion = 15688.246435 eV Total energy + Delta-G solvation = -2507.778894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78592 -38.42434 -35.85749 -33.01204 -30.62515 -29.58217 -29.15374 -28.05958 -26.39757 -23.56888 -21.52033 -21.07403 -20.78057 -20.27180 -18.20559 -17.23975 -16.55828 -16.16722 -15.89402 -15.74612 -14.98006 -14.51193 -14.14040 -14.05069 -13.89007 -13.41386 -13.03219 -12.78819 -12.68296 -12.41520 -12.06297 -12.00386 -11.86326 -11.83092 -11.79854 -11.65310 -11.52604 -11.35630 -11.31523 -11.11911 -11.01178 -10.89432 -10.41822 -8.40200 -7.72543 -5.35932 1.42548 1.45779 1.54041 2.52860 3.29432 3.62813 3.92881 3.98222 4.01792 4.04853 4.08457 4.34312 4.59294 4.66571 4.69050 4.77325 4.82760 4.87678 4.93353 4.93804 4.95484 4.97058 5.02196 5.10209 5.19914 5.21609 5.25767 5.28773 5.32351 5.47199 5.54340 5.58072 5.58975 5.66739 5.70569 5.75470 5.77784 5.92893 6.56200 7.27372 7.99599 8.51168 9.20262 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.012136 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.608172 B = 2306.627255 C = 3687.891448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.037 4.037 3 Si 0.945 3.055 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.051 0.949 9 N -0.587 5.587 10 C 0.160 3.840 11 C -0.103 4.103 12 C -0.101 4.101 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.119 4.119 16 C 0.168 3.832 17 C -0.131 4.131 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.129 4.129 21 H 0.247 0.753 22 H 0.055 0.945 23 H 0.017 0.983 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 -10.357 4.716 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.234 4.234 3 Si 0.774 3.226 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.068 0.932 9 N -0.306 5.306 10 C 0.034 3.966 11 C -0.124 4.124 12 C -0.139 4.139 13 C -0.156 4.156 14 C -0.152 4.152 15 C -0.157 4.157 16 C 0.061 3.939 17 C -0.171 4.171 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.169 4.169 21 H 0.057 0.943 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.173 -10.217 4.710 11.689 hybrid contribution 0.121 1.565 -0.317 1.601 sum 3.294 -8.652 4.393 10.248 Atomic orbital electron populations 1.70128 1.06619 1.25497 1.54066 1.25746 0.95545 1.01035 1.01060 0.85632 0.78516 0.80990 0.77456 1.21351 1.21983 1.19953 1.18974 0.93338 0.86401 1.38554 0.93178 1.43953 1.51404 1.03633 1.31565 1.20904 0.90539 0.99719 0.85423 1.22212 0.97633 0.96854 0.95689 1.22290 0.99823 0.95108 0.96636 1.22515 0.97366 1.00429 0.95338 1.22309 0.97838 0.95144 0.99932 1.22145 0.98990 0.98257 0.96351 1.21541 0.94148 0.87556 0.90646 1.22647 0.97874 0.98220 0.98362 1.22032 0.96954 0.98009 0.98245 1.22033 0.98183 0.99470 0.95449 1.22668 0.98028 0.98318 0.97852 0.94343 0.92739 0.96417 0.94468 0.92709 0.92955 0.91644 0.90377 0.90551 0.91577 0.92641 0.93148 0.92261 0.94117 0.94464 0.92199 0.90962 0.90509 0.91793 0.91998 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.23 11.48 21.65 0.25 -53.98 16 2 C -0.04 -2.08 4.97 84.86 0.42 -1.66 16 3 Si 0.95 45.45 29.60 68.60 2.03 47.48 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.24 -13.13 7.87 84.03 0.66 -12.47 16 8 H 0.05 2.77 6.64 -2.91 -0.02 2.75 16 9 N -0.59 -28.72 2.40 -670.75 -1.61 -30.33 16 10 C 0.16 7.57 4.40 86.38 0.38 7.95 16 11 C -0.10 -4.06 3.15 -10.07 -0.03 -4.09 16 12 C -0.10 -3.31 5.36 31.69 0.17 -3.14 16 13 C -0.12 -3.06 6.91 31.91 0.22 -2.84 16 14 C -0.11 -2.98 6.83 31.67 0.22 -2.76 16 15 C -0.12 -3.97 6.46 31.32 0.20 -3.77 16 16 C 0.17 6.95 2.54 46.31 0.12 7.07 16 17 C -0.13 -5.39 6.37 31.69 0.20 -5.19 16 18 C -0.11 -3.53 6.80 31.32 0.21 -3.32 16 19 C -0.11 -3.28 6.80 31.32 0.21 -3.07 16 20 C -0.13 -4.66 6.37 31.67 0.20 -4.46 16 21 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 22 H 0.05 3.01 5.54 -2.39 -0.01 2.99 16 23 H 0.02 0.81 7.82 -2.39 -0.02 0.79 16 24 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.05 1.82 6.57 -2.39 -0.02 1.81 16 26 H 0.05 1.77 6.74 -2.39 -0.02 1.75 16 27 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.76 7.67 -2.39 -0.02 1.75 16 33 H 0.06 2.34 6.78 -2.39 -0.02 2.33 16 34 H 0.04 1.95 7.16 -2.39 -0.02 1.93 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 2.07 6.59 -2.39 -0.02 2.05 16 41 H 0.04 1.77 6.52 -2.39 -0.02 1.76 16 Total: -1.00 -59.89 305.54 4.83 -55.06 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.97 Total: 13.51 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 3.19 Total: -31.75 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.36 Total: -84.31 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -59.89 4.83 -55.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.049 kcal (2) G-P(sol) polarization free energy of solvation -59.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds