Wall clock time and date at job start Sun Mar 29 2020 21:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46899 * 109.47100 * 2 1 4 4 C 1.46906 * 111.00111 * 292.67147 * 3 2 1 5 5 C 1.50692 * 109.47098 * 160.09147 * 4 3 2 6 6 H 1.07999 * 119.99875 * 4.62248 * 5 4 3 7 7 C 1.37881 * 119.99846 * 184.62850 * 5 4 3 8 8 N 1.31509 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47546 * 59.99876 * 9 7 5 11 11 H 1.48495 * 109.47199 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.47082 * 299.99985 * 9 7 5 13 13 C 1.46895 * 110.99801 * 168.71646 * 3 2 1 14 14 C 1.50695 * 109.47289 * 293.95441 * 13 3 2 15 15 N 1.30500 * 125.64950 * 269.97932 * 14 13 3 16 16 C 1.34134 * 109.25600 * 179.77638 * 15 14 13 17 17 C 1.34674 * 108.01674 * 0.39431 * 16 15 14 18 18 N 1.35041 * 125.65109 * 89.99958 * 14 13 3 19 19 C 1.46501 * 126.39892 * 359.97438 * 18 14 13 20 20 C 1.52997 * 109.47304 * 85.02028 * 19 18 14 21 21 H 1.09003 * 109.47234 * 179.60000 * 1 2 3 22 22 H 1.09000 * 109.46635 * 299.60398 * 1 2 3 23 23 H 1.09001 * 109.46959 * 59.60388 * 1 2 3 24 24 H 1.09001 * 109.46323 * 240.00194 * 2 1 3 25 25 H 1.08989 * 109.47036 * 120.00446 * 2 1 3 26 26 H 1.09000 * 109.46855 * 280.08948 * 4 3 2 27 27 H 1.09004 * 109.46817 * 40.08737 * 4 3 2 28 28 H 0.97002 * 120.00040 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.46879 * 173.95097 * 13 3 2 30 30 H 1.09008 * 109.47181 * 53.95422 * 13 3 2 31 31 H 1.08000 * 125.99134 * 180.24656 * 16 15 14 32 32 H 1.07997 * 126.58340 * 179.87687 * 17 16 15 33 33 H 1.09003 * 109.47468 * 205.02887 * 19 18 14 34 34 H 1.09004 * 109.46637 * 325.02386 * 19 18 14 35 35 H 1.08999 * 109.47399 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47132 * 300.00706 * 20 19 18 37 37 H 1.09004 * 109.46982 * 60.00569 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6968 2.0576 -1.2655 5 6 1.7552 3.5506 -1.0700 6 1 2.0793 3.9591 -0.1242 7 6 1.3949 4.3952 -2.0985 8 7 0.9997 3.8977 -3.2500 9 14 1.4666 6.2460 -1.8559 10 1 2.8584 6.6492 -1.5316 11 1 1.0314 6.9258 -3.1023 12 1 0.5661 6.6343 -0.7406 13 6 3.4632 1.4330 0.2683 14 6 3.7289 0.9588 1.6738 15 7 3.7645 1.7141 2.7374 16 6 4.0217 0.9533 3.8118 17 6 4.1591 -0.3205 3.3970 18 7 3.9700 -0.3181 2.0413 19 6 4.0199 -1.4833 1.1547 20 6 5.4207 -1.6058 0.5517 21 1 -0.3634 -1.0277 -0.0072 22 1 -0.3632 0.5077 0.8935 23 1 -0.3633 0.5200 -0.8864 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.4177 1.7625 -2.0280 27 1 0.6942 1.7716 -1.5834 28 1 0.7465 4.4919 -3.9737 29 1 3.8196 2.4570 0.1568 30 1 3.9857 0.7875 -0.4378 31 1 4.1064 1.3017 4.8306 32 1 4.3727 -1.1795 4.0158 33 1 3.7895 -2.3836 1.7244 34 1 3.2893 -1.3626 0.3548 35 1 5.4580 -2.4730 -0.1076 36 1 5.6511 -0.7055 -0.0179 37 1 6.1513 -1.7265 1.3516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:04 Heat of formation + Delta-G solvation = 68.296458 kcal Electronic energy + Delta-G solvation = -17377.768274 eV Core-core repulsion = 14770.538713 eV Total energy + Delta-G solvation = -2607.229561 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.83192 -37.01264 -34.82185 -32.59247 -31.04378 -29.99215 -29.23411 -26.87291 -24.77140 -23.70607 -22.61071 -21.07450 -20.35716 -18.86068 -16.98567 -16.44758 -15.44929 -15.03140 -14.66880 -14.38326 -13.86195 -13.79764 -13.55131 -13.32342 -12.85412 -12.52852 -12.25798 -12.07090 -11.80432 -11.60236 -11.20550 -11.08235 -10.87764 -10.77824 -10.56177 -10.26877 -9.68738 -9.50405 -9.31417 -9.23278 -8.37118 -8.05900 -7.29753 -5.97978 -3.98294 2.32362 2.99221 3.40803 3.43225 3.48631 3.53614 4.48955 4.57904 4.84542 4.86387 4.95471 5.02596 5.14440 5.38091 5.42958 5.50372 5.56417 5.59785 5.73965 5.84164 5.90517 6.00368 6.10649 6.21330 6.41435 6.53287 6.58903 6.77671 7.07527 7.18003 7.28685 7.49763 7.86697 8.09099 8.16663 8.52972 8.57396 9.10665 9.65986 11.12595 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.006918 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.825369 B = 4046.186093 C = 4438.899735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.525 5.525 4 C 0.192 3.808 5 C -0.504 4.504 6 H 0.067 0.933 7 C 0.055 3.945 8 N -0.902 5.902 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.144 3.856 14 C 0.236 3.764 15 N -0.478 5.478 16 C -0.031 4.031 17 C -0.074 4.074 18 N -0.458 5.458 19 C 0.087 3.913 20 C -0.168 4.168 21 H 0.044 0.956 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.020 0.980 25 H 0.058 0.942 26 H -0.010 1.010 27 H 0.042 0.958 28 H 0.261 0.739 29 H 0.112 0.888 30 H 0.034 0.966 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -13.027 7.933 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 N -0.251 5.251 4 C 0.067 3.933 5 C -0.543 4.543 6 H 0.085 0.915 7 C -0.145 4.145 8 N -0.542 5.542 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.201 1.201 13 C 0.015 3.985 14 C -0.027 4.027 15 N -0.196 5.196 16 C -0.179 4.179 17 C -0.206 4.206 18 N -0.142 5.142 19 C -0.036 4.036 20 C -0.226 4.226 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.008 0.992 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.130 0.870 30 H 0.052 0.948 31 H 0.181 0.819 32 H 0.184 0.816 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.709 -11.991 8.040 15.525 hybrid contribution 0.532 -0.458 -0.449 0.834 sum 6.242 -12.449 7.590 15.860 Atomic orbital electron populations 1.21767 0.95095 1.00003 1.03339 1.22255 0.96659 0.91275 0.98318 1.62118 1.11010 1.12977 1.38970 1.19837 0.96514 0.94094 0.82817 1.21186 1.43753 0.90403 0.98947 0.91530 1.24965 0.95397 0.99057 0.95118 1.69944 1.45656 1.35163 1.03479 0.86556 0.78606 0.85056 0.77206 1.20201 1.21507 1.20120 1.20374 0.90727 1.02471 0.84973 1.23532 1.02136 0.79311 0.97699 1.70323 1.19078 1.32761 0.97416 1.22272 1.07228 0.89973 0.98473 1.22520 1.13531 1.00663 0.83921 1.45571 1.53015 1.08396 1.07211 1.22069 0.99670 0.87197 0.94623 1.22155 0.95749 1.03228 1.01489 0.93666 0.92228 0.91573 0.96147 0.92411 0.99241 0.94007 0.92953 0.87002 0.94806 0.81902 0.81636 0.89339 0.88161 0.90703 0.91527 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.92 37.16 0.37 -2.15 16 2 C 0.04 0.78 4.18 -3.82 -0.02 0.76 16 3 N -0.52 -11.46 4.40 -237.52 -1.05 -12.51 16 4 C 0.19 4.92 4.61 -4.98 -0.02 4.89 16 5 C -0.50 -14.32 8.62 -34.44 -0.30 -14.61 16 6 H 0.07 1.93 7.67 -52.49 -0.40 1.53 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.14 2.88 5.03 -4.98 -0.03 2.86 16 14 C 0.24 4.38 6.58 -155.42 -1.02 3.36 16 15 N -0.48 -9.56 11.25 -10.82 -0.12 -9.68 16 16 C -0.03 -0.49 11.87 -17.81 -0.21 -0.70 16 17 C -0.07 -1.00 11.58 -16.56 -0.19 -1.19 16 18 N -0.46 -6.71 2.34 -113.91 -0.27 -6.98 16 19 C 0.09 0.96 5.63 -4.04 -0.02 0.94 16 20 C -0.17 -1.62 10.24 37.16 0.38 -1.24 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.07 1.28 6.29 -51.93 -0.33 0.95 16 24 H 0.02 0.35 7.72 -51.93 -0.40 -0.05 16 25 H 0.06 0.95 4.70 -51.94 -0.24 0.71 16 26 H -0.01 -0.27 8.00 -51.93 -0.42 -0.69 16 27 H 0.04 1.13 5.95 -51.93 -0.31 0.83 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.11 2.49 7.34 -51.93 -0.38 2.10 16 30 H 0.03 0.61 7.34 -51.92 -0.38 0.23 16 31 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 32 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.19 4.75 -51.93 -0.25 0.95 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 298.41 15.07 4.50 4.50 Total: -1.00 -32.20 298.41 -7.98 -40.18 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.60 Total: -1.04 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.16 Total: -5.60 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.70 Total: -55.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.20 -7.98 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.477 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds