Wall clock time and date at job start Sun Mar 29 2020 21:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46899 * 109.47100 * 2 1 4 4 C 1.46906 * 111.00111 * 292.67147 * 3 2 1 5 5 C 1.50692 * 109.47098 * 160.09147 * 4 3 2 6 6 H 1.07999 * 119.99875 * 4.62248 * 5 4 3 7 7 C 1.37881 * 119.99846 * 184.62850 * 5 4 3 8 8 N 1.31509 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47546 * 59.99876 * 9 7 5 11 11 H 1.48495 * 109.47199 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.47082 * 299.99985 * 9 7 5 13 13 C 1.46895 * 110.99801 * 168.71646 * 3 2 1 14 14 C 1.50695 * 109.47289 * 293.95441 * 13 3 2 15 15 N 1.30500 * 125.64950 * 269.97932 * 14 13 3 16 16 C 1.34134 * 109.25600 * 179.77638 * 15 14 13 17 17 C 1.34674 * 108.01674 * 0.39431 * 16 15 14 18 18 N 1.35041 * 125.65109 * 89.99958 * 14 13 3 19 19 C 1.46501 * 126.39892 * 359.97438 * 18 14 13 20 20 C 1.52997 * 109.47304 * 85.02028 * 19 18 14 21 21 H 1.09003 * 109.47234 * 179.60000 * 1 2 3 22 22 H 1.09000 * 109.46635 * 299.60398 * 1 2 3 23 23 H 1.09001 * 109.46959 * 59.60388 * 1 2 3 24 24 H 1.09001 * 109.46323 * 240.00194 * 2 1 3 25 25 H 1.08989 * 109.47036 * 120.00446 * 2 1 3 26 26 H 1.09000 * 109.46855 * 280.08948 * 4 3 2 27 27 H 1.09004 * 109.46817 * 40.08737 * 4 3 2 28 28 H 0.97002 * 120.00040 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.46879 * 173.95097 * 13 3 2 30 30 H 1.09008 * 109.47181 * 53.95422 * 13 3 2 31 31 H 1.08000 * 125.99134 * 180.24656 * 16 15 14 32 32 H 1.07997 * 126.58340 * 179.87687 * 17 16 15 33 33 H 1.09003 * 109.47468 * 205.02887 * 19 18 14 34 34 H 1.09004 * 109.46637 * 325.02386 * 19 18 14 35 35 H 1.08999 * 109.47399 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47132 * 300.00706 * 20 19 18 37 37 H 1.09004 * 109.46982 * 60.00569 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6968 2.0576 -1.2655 5 6 1.7552 3.5506 -1.0700 6 1 2.0793 3.9591 -0.1242 7 6 1.3949 4.3952 -2.0985 8 7 0.9997 3.8977 -3.2500 9 14 1.4666 6.2460 -1.8559 10 1 2.8584 6.6492 -1.5316 11 1 1.0314 6.9258 -3.1023 12 1 0.5661 6.6343 -0.7406 13 6 3.4632 1.4330 0.2683 14 6 3.7289 0.9588 1.6738 15 7 3.7645 1.7141 2.7374 16 6 4.0217 0.9533 3.8118 17 6 4.1591 -0.3205 3.3970 18 7 3.9700 -0.3181 2.0413 19 6 4.0199 -1.4833 1.1547 20 6 5.4207 -1.6058 0.5517 21 1 -0.3634 -1.0277 -0.0072 22 1 -0.3632 0.5077 0.8935 23 1 -0.3633 0.5200 -0.8864 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.4177 1.7625 -2.0280 27 1 0.6942 1.7716 -1.5834 28 1 0.7465 4.4919 -3.9737 29 1 3.8196 2.4570 0.1568 30 1 3.9857 0.7875 -0.4378 31 1 4.1064 1.3017 4.8306 32 1 4.3727 -1.1795 4.0158 33 1 3.7895 -2.3836 1.7244 34 1 3.2893 -1.3626 0.3548 35 1 5.4580 -2.4730 -0.1076 36 1 5.6511 -0.7055 -0.0179 37 1 6.1513 -1.7265 1.3516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:04 Heat of formation + Delta-G solvation = 47.173946 kcal Electronic energy + Delta-G solvation = -17378.684215 eV Core-core repulsion = 14770.538713 eV Total energy + Delta-G solvation = -2608.145502 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.04645 -38.67531 -35.88168 -34.74017 -32.46218 -31.12953 -30.74047 -28.65168 -26.32636 -24.95881 -24.17708 -22.37152 -21.84309 -20.20677 -18.61350 -18.08614 -17.00399 -16.50092 -16.09561 -15.87909 -15.40522 -15.21653 -14.70440 -14.51045 -14.38591 -13.96392 -13.58081 -13.40656 -13.18596 -12.98800 -12.86659 -12.64726 -12.62251 -12.34198 -12.13215 -12.08682 -11.49418 -11.32705 -10.77807 -10.57640 -10.52027 -9.29316 -9.00937 -8.18383 -6.26682 1.13489 1.40877 1.43674 1.51993 1.91584 2.24132 2.42592 3.12755 3.33764 3.55877 3.75739 3.93043 4.03962 4.13635 4.23949 4.30537 4.41963 4.53208 4.59593 4.65853 4.75236 4.81764 4.83550 4.92619 4.98496 5.16331 5.20599 5.24397 5.33214 5.44591 5.68602 5.94542 6.08913 6.24678 6.37185 6.60266 6.87530 7.31792 7.41996 8.91421 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.006918 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.825369 B = 4046.186093 C = 4438.899735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 N -0.541 5.541 4 C 0.209 3.791 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.273 1.273 13 C 0.154 3.846 14 C 0.207 3.793 15 N -0.526 5.526 16 C -0.063 4.063 17 C -0.042 4.042 18 N -0.450 5.450 19 C 0.079 3.921 20 C -0.163 4.163 21 H 0.084 0.916 22 H 0.046 0.954 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.079 0.921 26 H -0.031 1.031 27 H 0.024 0.976 28 H 0.265 0.735 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.184 0.816 32 H 0.216 0.784 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.041 0.959 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.679 -15.038 9.270 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 N -0.267 5.267 4 C 0.083 3.917 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.199 1.199 13 C 0.024 3.976 14 C -0.056 4.056 15 N -0.245 5.245 16 C -0.210 4.210 17 C -0.176 4.176 18 N -0.133 5.133 19 C -0.042 4.042 20 C -0.221 4.221 21 H 0.103 0.897 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.097 0.903 26 H -0.013 1.013 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.232 0.768 33 H 0.145 0.855 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.060 0.940 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.260 -14.029 9.370 17.994 hybrid contribution 0.403 0.062 -0.794 0.892 sum 6.663 -13.966 8.576 17.692 Atomic orbital electron populations 1.21742 0.94716 1.01942 1.01362 1.22350 0.96919 0.89239 0.99757 1.61989 1.12621 1.15501 1.36553 1.19443 0.94818 0.93249 0.84140 1.21429 1.43929 0.92230 0.98501 0.92981 1.25757 0.94872 1.03607 0.94767 1.70039 1.46185 1.36779 1.04141 0.85567 0.78765 0.79624 0.77456 1.19616 1.20323 1.19870 1.20068 0.89568 1.00876 0.87049 1.22902 1.05084 0.81183 0.96455 1.70196 1.20152 1.35124 0.99071 1.22765 1.08663 0.90959 0.98638 1.23236 1.09710 1.01221 0.83387 1.45746 1.51464 1.07936 1.08176 1.22401 1.00269 0.86982 0.94532 1.22128 0.94986 1.03150 1.01834 0.89740 0.93445 0.94203 0.94996 0.90305 1.01324 0.95814 0.92636 0.90648 0.93418 0.79907 0.76759 0.85548 0.89172 0.88144 0.93989 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.92 71.99 0.71 -4.08 16 2 C 0.04 1.59 4.18 86.31 0.36 1.95 16 3 N -0.54 -24.30 4.40 -905.37 -3.99 -28.29 16 4 C 0.21 11.21 4.61 85.55 0.39 11.60 16 5 C -0.52 -30.86 8.62 25.60 0.22 -30.64 16 6 H 0.05 3.16 7.67 -2.91 -0.02 3.14 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 9 Si 0.96 46.20 29.54 68.60 2.03 48.22 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 13 C 0.15 6.37 5.03 85.56 0.43 6.80 16 14 C 0.21 7.64 6.58 138.13 0.91 8.55 16 15 N -0.53 -21.18 11.25 -188.13 -2.12 -23.30 16 16 C -0.06 -1.89 11.87 83.52 0.99 -0.90 16 17 C -0.04 -0.99 11.58 83.09 0.96 -0.03 16 18 N -0.45 -12.06 2.34 -514.29 -1.20 -13.27 16 19 C 0.08 1.47 5.63 86.38 0.49 1.95 16 20 C -0.16 -2.66 10.24 71.98 0.74 -1.93 16 21 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.04 1.56 6.29 -2.39 -0.02 1.54 16 24 H 0.03 1.06 7.72 -2.39 -0.02 1.04 16 25 H 0.08 2.45 4.70 -2.39 -0.01 2.44 16 26 H -0.03 -1.74 8.00 -2.39 -0.02 -1.76 16 27 H 0.02 1.35 5.95 -2.38 -0.01 1.34 16 28 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.08 3.60 7.34 -2.39 -0.02 3.58 16 30 H 0.05 1.78 7.34 -2.38 -0.02 1.76 16 31 H 0.18 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.22 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.89 4.75 -2.38 -0.01 1.88 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.04 0.89 7.67 -2.39 -0.02 0.88 16 37 H 0.07 1.03 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -72.68 298.41 2.71 -69.96 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.04 Total: 8.43 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 6.67 Total: -5.79 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -7.02 Total: -120.83 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -72.68 2.71 -69.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.139 kcal (2) G-P(sol) polarization free energy of solvation -72.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds