Wall clock time and date at job start Sun Mar 29 2020 21:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.47091 * 2 1 4 4 C 1.36930 * 119.99326 * 274.72775 * 3 2 1 5 5 H 1.07998 * 120.00624 * 37.10004 * 4 3 2 6 6 C 1.38818 * 119.99725 * 217.09555 * 4 3 2 7 7 N 1.31620 * 119.99913 * 22.80900 * 6 4 3 8 8 Si 1.86801 * 120.00208 * 202.80351 * 6 4 3 9 9 H 1.48497 * 109.46996 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46973 * 120.00032 * 8 6 4 11 11 H 1.48496 * 109.47179 * 240.00049 * 8 6 4 12 12 C 1.46499 * 119.99938 * 94.72866 * 3 2 1 13 13 C 1.50696 * 109.46994 * 269.99716 * 12 3 2 14 14 C 1.39870 * 125.89955 * 95.00382 * 13 12 3 15 15 C 1.35313 * 107.92180 * 179.71360 * 14 13 12 16 16 N 1.34944 * 107.74603 * 0.42681 * 15 14 13 17 17 C 1.46501 * 126.03875 * 179.84035 * 16 15 14 18 18 C 1.53002 * 109.47400 * 84.71121 * 17 16 15 19 19 C 1.53005 * 109.46823 * 324.71285 * 17 16 15 20 20 N 1.30838 * 125.90030 * 274.97867 * 13 12 3 21 21 H 1.08994 * 109.47151 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47368 * 300.00490 * 1 2 3 23 23 H 1.09000 * 109.47085 * 60.00528 * 1 2 3 24 24 H 1.08995 * 109.47368 * 239.99510 * 2 1 3 25 25 H 1.09009 * 109.46898 * 119.99581 * 2 1 3 26 26 H 0.97004 * 120.00171 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46677 * 149.99916 * 12 3 2 28 28 H 1.09001 * 109.47229 * 29.99943 * 12 3 2 29 29 H 1.08008 * 126.03588 * 359.97438 * 14 13 12 30 30 H 1.08005 * 126.12599 * 180.26001 * 15 14 13 31 31 H 1.08996 * 109.47220 * 204.71404 * 17 16 15 32 32 H 1.08996 * 109.47165 * 300.00316 * 18 17 16 33 33 H 1.09006 * 109.46812 * 59.99823 * 18 17 16 34 34 H 1.08995 * 109.46976 * 180.02562 * 18 17 16 35 35 H 1.08996 * 109.47125 * 60.00061 * 19 17 16 36 36 H 1.08996 * 109.46635 * 180.02562 * 19 17 16 37 37 H 1.09002 * 109.46783 * 299.99604 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1543 2.0592 -1.1819 5 1 1.4336 1.9152 -1.9732 6 6 3.2187 2.9318 -1.3630 7 7 4.3117 2.7950 -0.6425 8 14 3.0998 4.3001 -2.6291 9 1 1.7771 4.2389 -3.3013 10 1 3.2510 5.6139 -1.9538 11 1 4.1765 4.1355 -3.6384 12 6 2.3611 2.0370 1.2644 13 6 1.1437 2.7339 1.8150 14 6 0.2518 2.2068 2.7548 15 6 -0.6999 3.1385 2.9939 16 7 -0.4256 4.2133 2.2253 17 6 -1.2041 5.4530 2.1677 18 6 -0.7596 6.3873 3.2948 19 6 -2.6908 5.1295 2.3298 20 7 0.7386 3.9366 1.4969 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.0553 3.4050 -0.7688 27 1 3.1512 2.7678 1.0921 28 1 2.7066 1.2901 1.9791 29 1 0.3144 1.2304 3.2123 30 1 -1.5317 3.0387 3.6755 31 1 -1.0410 5.9401 1.2064 32 1 -0.9227 5.9002 4.2561 33 1 0.2995 6.6177 3.1793 34 1 -1.3392 7.3094 3.2522 35 1 -2.8539 4.6424 3.2911 36 1 -3.2700 6.0518 2.2865 37 1 -3.0074 4.4639 1.5268 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083683358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:11 Heat of formation + Delta-G solvation = 91.364356 kcal Electronic energy + Delta-G solvation = -17437.668356 eV Core-core repulsion = 14831.439094 eV Total energy + Delta-G solvation = -2606.229262 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45196 -36.13456 -35.06794 -31.73844 -30.41561 -29.17701 -28.49361 -27.32068 -25.78401 -23.51891 -22.11844 -20.41682 -19.49790 -18.89322 -16.74799 -16.35610 -14.94821 -14.74480 -14.21201 -13.73372 -13.63795 -13.35634 -13.10579 -12.71380 -12.54183 -12.27975 -12.20158 -12.06493 -11.43618 -11.34874 -11.11919 -10.99096 -10.90751 -10.65454 -10.42351 -10.10716 -9.92213 -9.73996 -9.45701 -8.42620 -8.30965 -7.80190 -6.49695 -5.69531 -3.24141 2.63362 3.10701 3.45718 3.54189 3.57464 3.71875 4.62012 4.64862 4.93368 5.10198 5.22926 5.39771 5.43936 5.57536 5.60667 5.65139 5.74063 5.82747 6.07557 6.12508 6.17162 6.28609 6.47106 6.48419 6.52639 6.69693 6.74746 6.97731 7.01609 7.27576 7.55232 7.71396 7.75045 7.94227 8.59047 8.76215 9.28735 9.92609 10.49634 11.31758 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.009165 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.166254 B = 3054.515736 C = 3801.614620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.144 3.856 3 N -0.571 5.571 4 C -0.251 4.251 5 H 0.056 0.944 6 C 0.020 3.980 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.292 1.292 12 C 0.212 3.788 13 C 0.085 3.915 14 C -0.271 4.271 15 C 0.033 3.967 16 N -0.385 5.385 17 C 0.157 3.843 18 C -0.162 4.162 19 C -0.161 4.161 20 N -0.279 5.279 21 H 0.033 0.967 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.035 0.965 26 H 0.253 0.747 27 H 0.105 0.895 28 H 0.045 0.955 29 H 0.134 0.866 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 2.535 8.557 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 N -0.291 5.291 4 C -0.381 4.381 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.219 1.219 12 C 0.083 3.917 13 C -0.086 4.086 14 C -0.301 4.301 15 C -0.112 4.112 16 N -0.168 5.168 17 C 0.054 3.946 18 C -0.220 4.220 19 C -0.219 4.219 20 N -0.100 5.100 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.064 0.936 29 H 0.151 0.849 30 H 0.173 0.827 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.814 3.771 7.824 13.870 hybrid contribution -0.540 0.113 -0.027 0.553 sum -11.354 3.884 7.797 14.310 Atomic orbital electron populations 1.22358 1.00175 0.98671 1.01525 1.20848 0.91674 0.86956 0.98766 1.43668 1.75653 1.08018 1.01803 1.18914 1.04914 1.21211 0.93088 0.92634 1.25057 0.94103 1.00874 0.98029 1.70010 1.03177 1.36817 1.42768 0.86359 0.77352 0.82937 0.80862 1.20307 1.21369 1.21921 1.19484 0.90622 0.95712 0.85868 1.24123 0.99512 0.91251 0.93675 1.21379 0.99583 1.01483 1.07639 1.22144 1.00974 0.89355 0.98756 1.48945 1.22014 1.12486 1.33320 1.21029 0.89705 0.82966 1.00885 1.22216 1.02691 0.98978 0.98105 1.22155 0.94117 1.02789 1.02830 1.77576 0.97473 1.18150 1.16781 0.94807 0.93141 0.93678 0.93690 0.94667 0.93661 0.87736 0.93635 0.84862 0.82721 0.88515 0.92292 0.91626 0.91187 0.91901 0.90651 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 10.21 37.16 0.38 -2.92 16 2 C 0.14 3.16 6.44 -4.04 -0.03 3.13 16 3 N -0.57 -14.74 2.42 -174.61 -0.42 -15.17 16 4 C -0.25 -7.17 9.45 -15.06 -0.14 -7.31 16 5 H 0.06 1.62 7.93 -52.49 -0.42 1.20 16 6 C 0.02 0.57 4.92 -17.43 -0.09 0.48 16 7 N -0.89 -26.13 11.53 55.49 0.64 -25.49 16 8 Si 0.90 22.88 29.61 -169.99 -5.03 17.85 16 9 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 C 0.21 5.25 5.90 -5.20 -0.03 5.22 16 13 C 0.08 1.93 6.67 -82.41 -0.55 1.38 16 14 C -0.27 -5.11 9.44 -40.01 -0.38 -5.49 16 15 C 0.03 0.54 10.59 -17.23 -0.18 0.36 16 16 N -0.38 -7.00 3.52 -54.86 -0.19 -7.20 16 17 C 0.16 2.17 3.93 -67.93 -0.27 1.90 16 18 C -0.16 -1.88 9.52 37.16 0.35 -1.52 16 19 C -0.16 -1.66 8.84 37.16 0.33 -1.33 16 20 N -0.28 -6.51 12.58 33.67 0.42 -6.09 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 1.00 6.64 -51.93 -0.35 0.66 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.04 1.00 8.08 -51.93 -0.42 0.58 16 25 H 0.03 0.71 7.84 -51.92 -0.41 0.30 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.11 2.94 5.54 -51.93 -0.29 2.66 16 28 H 0.05 1.04 7.86 -51.93 -0.41 0.63 16 29 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 30 H 0.16 1.92 7.27 -52.48 -0.38 1.53 16 31 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.58 7.16 -51.93 -0.37 0.21 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -32.16 306.70 -6.54 -38.70 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.98 Total: -1.13 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.60 Total: -6.11 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.45 Total: -53.94 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.16 -6.54 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083683358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.068 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds