Wall clock time and date at job start Sun Mar 29 2020 21:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.47091 * 2 1 4 4 C 1.36930 * 119.99326 * 274.72775 * 3 2 1 5 5 H 1.07998 * 120.00624 * 37.10004 * 4 3 2 6 6 C 1.38818 * 119.99725 * 217.09555 * 4 3 2 7 7 N 1.31620 * 119.99913 * 22.80900 * 6 4 3 8 8 Si 1.86801 * 120.00208 * 202.80351 * 6 4 3 9 9 H 1.48497 * 109.46996 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46973 * 120.00032 * 8 6 4 11 11 H 1.48496 * 109.47179 * 240.00049 * 8 6 4 12 12 C 1.46499 * 119.99938 * 94.72866 * 3 2 1 13 13 C 1.50696 * 109.46994 * 269.99716 * 12 3 2 14 14 C 1.39870 * 125.89955 * 95.00382 * 13 12 3 15 15 C 1.35313 * 107.92180 * 179.71360 * 14 13 12 16 16 N 1.34944 * 107.74603 * 0.42681 * 15 14 13 17 17 C 1.46501 * 126.03875 * 179.84035 * 16 15 14 18 18 C 1.53002 * 109.47400 * 84.71121 * 17 16 15 19 19 C 1.53005 * 109.46823 * 324.71285 * 17 16 15 20 20 N 1.30838 * 125.90030 * 274.97867 * 13 12 3 21 21 H 1.08994 * 109.47151 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47368 * 300.00490 * 1 2 3 23 23 H 1.09000 * 109.47085 * 60.00528 * 1 2 3 24 24 H 1.08995 * 109.47368 * 239.99510 * 2 1 3 25 25 H 1.09009 * 109.46898 * 119.99581 * 2 1 3 26 26 H 0.97004 * 120.00171 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46677 * 149.99916 * 12 3 2 28 28 H 1.09001 * 109.47229 * 29.99943 * 12 3 2 29 29 H 1.08008 * 126.03588 * 359.97438 * 14 13 12 30 30 H 1.08005 * 126.12599 * 180.26001 * 15 14 13 31 31 H 1.08996 * 109.47220 * 204.71404 * 17 16 15 32 32 H 1.08996 * 109.47165 * 300.00316 * 18 17 16 33 33 H 1.09006 * 109.46812 * 59.99823 * 18 17 16 34 34 H 1.08995 * 109.46976 * 180.02562 * 18 17 16 35 35 H 1.08996 * 109.47125 * 60.00061 * 19 17 16 36 36 H 1.08996 * 109.46635 * 180.02562 * 19 17 16 37 37 H 1.09002 * 109.46783 * 299.99604 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1543 2.0592 -1.1819 5 1 1.4336 1.9152 -1.9732 6 6 3.2187 2.9318 -1.3630 7 7 4.3117 2.7950 -0.6425 8 14 3.0998 4.3001 -2.6291 9 1 1.7771 4.2389 -3.3013 10 1 3.2510 5.6139 -1.9538 11 1 4.1765 4.1355 -3.6384 12 6 2.3611 2.0370 1.2644 13 6 1.1437 2.7339 1.8150 14 6 0.2518 2.2068 2.7548 15 6 -0.6999 3.1385 2.9939 16 7 -0.4256 4.2133 2.2253 17 6 -1.2041 5.4530 2.1677 18 6 -0.7596 6.3873 3.2948 19 6 -2.6908 5.1295 2.3298 20 7 0.7386 3.9366 1.4969 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.0553 3.4050 -0.7688 27 1 3.1512 2.7678 1.0921 28 1 2.7066 1.2901 1.9791 29 1 0.3144 1.2304 3.2123 30 1 -1.5317 3.0387 3.6755 31 1 -1.0410 5.9401 1.2064 32 1 -0.9227 5.9002 4.2561 33 1 0.2995 6.6177 3.1793 34 1 -1.3392 7.3094 3.2522 35 1 -2.8539 4.6424 3.2911 36 1 -3.2700 6.0518 2.2865 37 1 -3.0074 4.4639 1.5268 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083683358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:11 Heat of formation + Delta-G solvation = 71.730202 kcal Electronic energy + Delta-G solvation = -17438.519757 eV Core-core repulsion = 14831.439094 eV Total energy + Delta-G solvation = -2607.080663 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.90892 -37.87062 -36.39421 -33.79647 -31.99121 -30.62761 -30.21757 -28.20061 -27.65513 -25.38876 -23.39669 -22.24436 -20.87361 -20.47424 -18.56381 -17.81881 -16.89609 -16.08120 -15.71649 -15.65640 -15.14618 -14.82781 -14.41919 -14.29148 -13.99801 -13.67924 -13.23312 -13.18804 -13.14925 -12.98027 -12.67110 -12.63149 -12.40998 -12.26614 -12.13506 -12.01753 -11.82203 -11.50825 -11.11803 -10.50212 -9.94772 -9.23249 -8.58059 -7.83616 -5.42722 1.23328 1.38291 1.43250 1.51392 1.84005 2.11512 2.51503 3.26888 3.62843 3.87985 3.97650 4.08686 4.12272 4.21808 4.47680 4.55781 4.64494 4.74468 4.79562 4.81432 4.90107 4.91236 5.00178 5.05842 5.10209 5.19506 5.23192 5.31262 5.36754 5.60754 5.65361 5.72253 5.99324 6.45948 6.48410 7.15865 7.20113 7.87694 8.39192 9.12924 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.009165 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.166254 B = 3054.515736 C = 3801.614620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.139 3.861 3 N -0.587 5.587 4 C -0.257 4.257 5 H 0.042 0.958 6 C -0.024 4.024 7 N -0.911 5.911 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.217 3.783 13 C 0.065 3.935 14 C -0.287 4.287 15 C 0.056 3.944 16 N -0.380 5.380 17 C 0.142 3.858 18 C -0.153 4.153 19 C -0.150 4.150 20 N -0.339 5.339 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.021 0.979 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.251 0.749 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.153 0.847 30 H 0.208 0.792 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 2.612 10.107 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.013 3.987 3 N -0.308 5.308 4 C -0.387 4.387 5 H 0.060 0.940 6 C -0.222 4.222 7 N -0.555 5.555 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.221 1.221 11 H -0.210 1.210 12 C 0.088 3.912 13 C -0.104 4.104 14 C -0.317 4.317 15 C -0.090 4.090 16 N -0.163 5.163 17 C 0.041 3.959 18 C -0.211 4.211 19 C -0.208 4.208 20 N -0.162 5.162 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.171 0.829 30 H 0.224 0.776 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.537 3.840 9.369 16.905 hybrid contribution 0.219 0.119 -0.437 0.503 sum -13.318 3.959 8.932 16.518 Atomic orbital electron populations 1.22154 0.98015 1.00578 1.00289 1.20998 0.93261 0.85165 0.99230 1.43836 1.76124 1.09464 1.01336 1.18983 1.04197 1.21694 0.93840 0.93993 1.25628 0.94015 1.02622 0.99960 1.70105 1.03628 1.37479 1.44259 0.85543 0.77444 0.80256 0.79171 1.20073 1.22119 1.20987 1.19201 0.90931 0.95177 0.85872 1.23727 0.99591 0.91768 0.95305 1.21572 0.99576 1.03059 1.07489 1.22839 1.01010 0.87516 0.97623 1.49254 1.20638 1.14116 1.32325 1.21497 0.91617 0.81843 1.00972 1.22161 1.01290 0.99992 0.97646 1.22131 0.91115 1.04264 1.03327 1.77427 1.00439 1.19055 1.19231 0.91220 0.93202 0.95961 0.94658 0.92687 0.93952 0.91752 0.92507 0.82945 0.77586 0.90486 0.90971 0.94560 0.87917 0.89857 0.87676 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 10.21 71.98 0.74 -4.99 16 2 C 0.14 6.04 6.44 86.38 0.56 6.60 16 3 N -0.59 -30.88 2.42 -706.33 -1.71 -32.58 16 4 C -0.26 -15.05 9.45 84.04 0.79 -14.26 16 5 H 0.04 2.53 7.93 -2.91 -0.02 2.51 16 6 C -0.02 -1.45 4.92 84.86 0.42 -1.03 16 7 N -0.91 -55.67 11.53 21.65 0.25 -55.42 16 8 Si 0.95 48.42 29.61 68.60 2.03 50.45 16 9 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 10 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 11 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 12 C 0.22 11.02 5.90 85.63 0.50 11.53 16 13 C 0.06 2.96 6.67 43.10 0.29 3.25 16 14 C -0.29 -10.31 9.44 21.99 0.21 -10.10 16 15 C 0.06 1.68 10.59 83.54 0.89 2.57 16 16 N -0.38 -13.28 3.52 -327.48 -1.15 -14.44 16 17 C 0.14 3.63 3.93 44.99 0.18 3.80 16 18 C -0.15 -3.16 9.52 71.98 0.69 -2.48 16 19 C -0.15 -2.51 8.84 71.98 0.64 -1.87 16 20 N -0.34 -16.06 12.58 -47.39 -0.60 -16.65 16 21 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.05 1.89 6.64 -2.39 -0.02 1.87 16 23 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.03 1.58 8.08 -2.39 -0.02 1.56 16 25 H 0.05 2.16 7.84 -2.38 -0.02 2.14 16 26 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 27 H 0.06 3.81 5.54 -2.39 -0.01 3.80 16 28 H 0.06 2.64 7.86 -2.39 -0.02 2.62 16 29 H 0.15 4.72 8.06 -2.91 -0.02 4.70 16 30 H 0.21 3.89 7.27 -2.91 -0.02 3.87 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 0.95 8.14 -2.38 -0.02 0.94 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.07 7.16 -2.39 -0.02 1.06 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -73.09 306.70 5.73 -67.36 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.02 Total: 8.26 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 5.89 Total: -6.98 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -3.21 Total: -119.09 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -73.09 5.73 -67.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083683358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.090 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds