Wall clock time and date at job start Sun Mar 29 2020 22:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47105 * 2 1 4 4 C 1.52999 * 109.46881 * 299.99842 * 3 2 1 5 5 C 1.52993 * 109.47500 * 299.99903 * 4 3 2 6 6 N 1.46904 * 109.47534 * 179.97438 * 5 4 3 7 7 C 1.46904 * 110.99787 * 155.00062 * 6 5 4 8 8 C 1.52999 * 109.46646 * 185.19547 * 7 6 5 9 9 C 1.50699 * 115.55445 * 297.13794 * 8 7 6 10 10 H 1.08000 * 119.99679 * 95.21041 * 9 8 7 11 11 C 1.37883 * 120.00138 * 275.22254 * 9 8 7 12 12 N 1.31514 * 119.99876 * 7.09318 * 11 9 8 13 13 Si 1.86794 * 120.00059 * 187.09580 * 11 9 8 14 14 H 1.48496 * 109.47468 * 179.97438 * 13 11 9 15 15 H 1.48507 * 109.47052 * 299.99863 * 13 11 9 16 16 H 1.48507 * 109.47223 * 59.99305 * 13 11 9 17 17 C 1.53003 * 117.49863 * 82.81338 * 8 7 6 18 18 C 1.53001 * 117.49730 * 151.47248 * 8 7 6 19 19 C 1.53007 * 109.46976 * 60.00038 * 5 4 3 20 20 C 1.52996 * 109.47077 * 239.99806 * 2 1 3 21 21 H 1.09002 * 109.46866 * 60.00243 * 1 2 3 22 22 H 1.09003 * 109.46700 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47115 * 300.00165 * 1 2 3 24 24 H 1.09002 * 109.46866 * 119.99757 * 2 1 3 25 25 H 1.09000 * 109.47299 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47269 * 59.99929 * 3 2 1 27 27 H 1.09003 * 109.47382 * 179.97438 * 4 3 2 28 28 H 1.09009 * 109.47431 * 60.00414 * 4 3 2 29 29 H 1.08999 * 109.47240 * 300.00591 * 5 4 3 30 30 H 1.00891 * 111.00013 * 278.95841 * 6 5 4 31 31 H 1.09000 * 109.47248 * 65.19800 * 7 6 5 32 32 H 1.09000 * 109.47262 * 305.19227 * 7 6 5 33 33 H 0.97006 * 119.99734 * 355.40076 * 12 11 9 34 34 H 1.09006 * 117.49442 * 214.99775 * 17 8 7 35 35 H 1.08996 * 117.49999 * 0.02562 * 17 8 7 36 36 H 1.09005 * 117.50024 * 359.97296 * 18 8 7 37 37 H 1.09000 * 117.50409 * 144.97210 * 18 8 7 38 38 H 1.09000 * 109.47203 * 60.00132 * 19 5 4 39 39 H 1.09001 * 109.47270 * 180.02562 * 19 5 4 40 40 H 1.09000 * 109.46973 * 179.97438 * 20 2 1 41 41 H 1.09007 * 109.47514 * 300.00202 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 2.0400 1.4425 -2.4985 6 7 1.5499 2.1346 -3.6980 7 6 2.4335 1.8888 -4.8456 8 6 1.9657 2.7259 -6.0377 9 6 0.5885 2.4036 -6.5579 10 1 -0.2637 2.9745 -6.2199 11 6 0.4164 1.3796 -7.4652 12 7 1.4268 0.5952 -7.7708 13 14 -1.2517 1.1066 -8.2602 14 1 -1.1736 -0.0477 -9.1910 15 1 -2.2617 0.8271 -7.2079 16 1 -1.6461 2.3240 -9.0138 17 6 2.4195 4.1859 -6.0974 18 6 3.0226 3.1566 -7.0566 19 6 1.5301 -0.0001 -2.4985 20 6 2.0401 -0.7213 -1.2492 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.1301 1.4425 0.0005 26 1 1.6767 1.9563 0.8900 27 1 1.8930 3.1915 -1.2491 28 1 0.4400 2.1637 -1.2493 29 1 3.1300 1.4424 -2.4985 30 1 0.6006 1.8652 -3.9083 31 1 2.4014 0.8316 -5.1090 32 1 3.4544 2.1674 -4.5843 33 1 2.3086 0.7772 -7.4099 34 1 1.7219 4.9131 -6.5129 35 1 3.0517 4.5498 -5.2875 36 1 4.0514 2.8441 -6.8774 37 1 2.7221 3.2065 -8.1032 38 1 0.4401 -0.0001 -2.4985 39 1 1.8937 -0.5141 -3.3882 40 1 3.1300 -0.7209 -1.2494 41 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:01 Heat of formation + Delta-G solvation = -10.933656 kcal Electronic energy + Delta-G solvation = -17695.990132 eV Core-core repulsion = 15188.865239 eV Total energy + Delta-G solvation = -2507.124893 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.16719 -36.98690 -34.18795 -31.81292 -30.62544 -29.77884 -26.57929 -24.94460 -23.91459 -22.37856 -21.21984 -20.88041 -19.41457 -18.42625 -16.42224 -15.74924 -14.67759 -14.53321 -14.44920 -13.98021 -13.71619 -13.34829 -12.93897 -12.70773 -12.46031 -12.06652 -11.98763 -11.84360 -11.65452 -11.32222 -10.88224 -10.83336 -10.77785 -10.66659 -10.34101 -10.11739 -10.09162 -9.96373 -9.95118 -9.39963 -8.45953 -8.32340 -8.23149 -7.49435 -6.31088 -4.03999 3.43155 3.45583 3.63711 4.52501 4.65062 4.83655 4.87680 5.06532 5.31499 5.38428 5.38781 5.48046 5.53786 5.54687 5.70312 5.71174 5.86304 5.95653 5.98781 6.03226 6.06492 6.16394 6.17723 6.32311 6.34083 6.38204 6.41093 6.46031 6.61392 6.64604 6.71249 6.74050 6.79890 6.98836 7.36478 7.37140 7.98066 8.27380 8.36560 8.48598 8.93415 9.70826 11.07889 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.006826 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.242173 B = 4101.043670 C = 4672.421936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.112 4.112 4 C -0.106 4.106 5 C 0.089 3.911 6 N -0.674 5.674 7 C 0.103 3.897 8 C 0.029 3.971 9 C -0.569 4.569 10 H 0.052 0.948 11 C 0.025 3.975 12 N -0.908 5.908 13 Si 1.064 2.936 14 H -0.284 1.284 15 H -0.289 1.289 16 H -0.288 1.288 17 C -0.185 4.185 18 C -0.187 4.187 19 C -0.150 4.150 20 C -0.109 4.109 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.349 0.651 31 H 0.026 0.974 32 H 0.037 0.963 33 H 0.274 0.726 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -0.943 13.293 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.151 4.151 4 C -0.144 4.144 5 C -0.022 4.022 6 N -0.304 5.304 7 C -0.026 4.026 8 C 0.028 3.972 9 C -0.607 4.607 10 H 0.070 0.930 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.893 3.107 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.215 1.215 17 C -0.222 4.222 18 C -0.225 4.225 19 C -0.190 4.190 20 C -0.148 4.148 21 H 0.084 0.916 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.168 0.832 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.139 -1.343 12.397 12.470 hybrid contribution 0.726 0.079 0.739 1.039 sum 0.865 -1.264 13.136 13.225 Atomic orbital electron populations 1.21943 0.95438 1.01369 1.02054 1.21088 0.95952 0.96182 0.97701 1.21558 1.00291 0.95161 0.98047 1.21516 1.00972 0.99011 0.92930 1.21542 0.98752 0.90465 0.91458 1.60489 1.06870 1.59815 1.03213 1.21508 0.93319 0.97694 0.90106 1.19045 0.94513 0.91120 0.92505 1.21285 0.91161 1.20443 1.27788 0.92963 1.25739 1.04724 0.92578 0.94976 1.70734 1.02011 1.35868 1.45650 0.83612 0.74466 0.76178 0.76452 1.20957 1.21521 1.21507 1.22746 1.03667 0.94525 1.01301 1.22782 0.96829 1.06130 0.96766 1.22328 1.01373 0.97657 0.97592 1.21505 1.00197 0.98535 0.94516 0.91600 0.93170 0.93155 0.91918 0.92365 0.92333 0.91773 0.91844 0.91730 0.83193 0.95577 0.94482 0.91443 0.90641 0.91530 0.91902 0.90108 0.91578 0.92093 0.92380 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.50 37.16 0.32 -1.36 16 2 C -0.09 -1.02 3.19 -90.62 -0.29 -1.31 16 3 C -0.11 -1.30 5.45 -26.73 -0.15 -1.45 16 4 C -0.11 -1.48 5.25 -26.73 -0.14 -1.62 16 5 C 0.09 1.43 2.47 -67.71 -0.17 1.27 16 6 N -0.67 -13.35 6.21 -106.72 -0.66 -14.01 16 7 C 0.10 2.30 5.29 -3.82 -0.02 2.28 16 8 C 0.03 0.71 1.14 -155.66 -0.18 0.54 16 9 C -0.57 -15.51 8.24 -34.44 -0.28 -15.80 16 10 H 0.05 1.45 7.82 -52.49 -0.41 1.04 16 11 C 0.03 0.70 5.39 -17.82 -0.10 0.60 16 12 N -0.91 -26.59 13.57 55.43 0.75 -25.84 16 13 Si 1.06 24.84 29.91 -169.99 -5.08 19.75 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.19 -4.20 9.96 -26.69 -0.27 -4.47 16 18 C -0.19 -4.43 8.73 -26.69 -0.23 -4.67 16 19 C -0.15 -2.31 4.90 -26.73 -0.13 -2.44 16 20 C -0.11 -1.38 5.45 -26.73 -0.15 -1.52 16 21 H 0.07 0.81 4.81 -51.93 -0.25 0.56 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.89 6.43 -51.92 -0.33 0.56 16 29 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 30 H 0.35 7.38 7.96 -39.30 -0.31 7.06 16 31 H 0.03 0.64 7.26 -51.93 -0.38 0.26 16 32 H 0.04 0.79 7.89 -51.93 -0.41 0.38 16 33 H 0.27 8.01 6.20 -40.82 -0.25 7.76 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 38 H 0.07 1.03 6.42 -51.93 -0.33 0.70 16 39 H 0.06 1.06 7.55 -51.93 -0.39 0.67 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 312.73 15.07 4.71 4.71 Total: -1.00 -27.98 312.73 -9.40 -37.39 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.34 Total: 7.95 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -1.78 Total: -29.94 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.09 Total: -39.85 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.98 -9.40 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.453 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds