Wall clock time and date at job start Sun Mar 29 2020 22:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47105 * 2 1 4 4 C 1.52999 * 109.46881 * 299.99842 * 3 2 1 5 5 C 1.52993 * 109.47500 * 299.99903 * 4 3 2 6 6 N 1.46904 * 109.47534 * 179.97438 * 5 4 3 7 7 C 1.46904 * 110.99787 * 155.00062 * 6 5 4 8 8 C 1.52999 * 109.46646 * 185.19547 * 7 6 5 9 9 C 1.50699 * 115.55445 * 297.13794 * 8 7 6 10 10 H 1.08000 * 119.99679 * 95.21041 * 9 8 7 11 11 C 1.37883 * 120.00138 * 275.22254 * 9 8 7 12 12 N 1.31514 * 119.99876 * 7.09318 * 11 9 8 13 13 Si 1.86794 * 120.00059 * 187.09580 * 11 9 8 14 14 H 1.48496 * 109.47468 * 179.97438 * 13 11 9 15 15 H 1.48507 * 109.47052 * 299.99863 * 13 11 9 16 16 H 1.48507 * 109.47223 * 59.99305 * 13 11 9 17 17 C 1.53003 * 117.49863 * 82.81338 * 8 7 6 18 18 C 1.53001 * 117.49730 * 151.47248 * 8 7 6 19 19 C 1.53007 * 109.46976 * 60.00038 * 5 4 3 20 20 C 1.52996 * 109.47077 * 239.99806 * 2 1 3 21 21 H 1.09002 * 109.46866 * 60.00243 * 1 2 3 22 22 H 1.09003 * 109.46700 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47115 * 300.00165 * 1 2 3 24 24 H 1.09002 * 109.46866 * 119.99757 * 2 1 3 25 25 H 1.09000 * 109.47299 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47269 * 59.99929 * 3 2 1 27 27 H 1.09003 * 109.47382 * 179.97438 * 4 3 2 28 28 H 1.09009 * 109.47431 * 60.00414 * 4 3 2 29 29 H 1.08999 * 109.47240 * 300.00591 * 5 4 3 30 30 H 1.00891 * 111.00013 * 278.95841 * 6 5 4 31 31 H 1.09000 * 109.47248 * 65.19800 * 7 6 5 32 32 H 1.09000 * 109.47262 * 305.19227 * 7 6 5 33 33 H 0.97006 * 119.99734 * 355.40076 * 12 11 9 34 34 H 1.09006 * 117.49442 * 214.99775 * 17 8 7 35 35 H 1.08996 * 117.49999 * 0.02562 * 17 8 7 36 36 H 1.09005 * 117.50024 * 359.97296 * 18 8 7 37 37 H 1.09000 * 117.50409 * 144.97210 * 18 8 7 38 38 H 1.09000 * 109.47203 * 60.00132 * 19 5 4 39 39 H 1.09001 * 109.47270 * 180.02562 * 19 5 4 40 40 H 1.09000 * 109.46973 * 179.97438 * 20 2 1 41 41 H 1.09007 * 109.47514 * 300.00202 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 2.0400 1.4425 -2.4985 6 7 1.5499 2.1346 -3.6980 7 6 2.4335 1.8888 -4.8456 8 6 1.9657 2.7259 -6.0377 9 6 0.5885 2.4036 -6.5579 10 1 -0.2637 2.9745 -6.2199 11 6 0.4164 1.3796 -7.4652 12 7 1.4268 0.5952 -7.7708 13 14 -1.2517 1.1066 -8.2602 14 1 -1.1736 -0.0477 -9.1910 15 1 -2.2617 0.8271 -7.2079 16 1 -1.6461 2.3240 -9.0138 17 6 2.4195 4.1859 -6.0974 18 6 3.0226 3.1566 -7.0566 19 6 1.5301 -0.0001 -2.4985 20 6 2.0401 -0.7213 -1.2492 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.1301 1.4425 0.0005 26 1 1.6767 1.9563 0.8900 27 1 1.8930 3.1915 -1.2491 28 1 0.4400 2.1637 -1.2493 29 1 3.1300 1.4424 -2.4985 30 1 0.6006 1.8652 -3.9083 31 1 2.4014 0.8316 -5.1090 32 1 3.4544 2.1674 -4.5843 33 1 2.3086 0.7772 -7.4099 34 1 1.7219 4.9131 -6.5129 35 1 3.0517 4.5498 -5.2875 36 1 4.0514 2.8441 -6.8774 37 1 2.7221 3.2065 -8.1032 38 1 0.4401 -0.0001 -2.4985 39 1 1.8937 -0.5141 -3.3882 40 1 3.1300 -0.7209 -1.2494 41 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:01 Heat of formation + Delta-G solvation = -25.835239 kcal Electronic energy + Delta-G solvation = -17696.636314 eV Core-core repulsion = 15188.865239 eV Total energy + Delta-G solvation = -2507.771074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36024 -38.79344 -35.62498 -33.92083 -31.71131 -31.07641 -27.77299 -26.95423 -25.51199 -23.48174 -23.03598 -22.23487 -21.32518 -19.55895 -18.41051 -16.90828 -16.17494 -16.00306 -15.74697 -15.60127 -15.48565 -14.57347 -14.47561 -14.21696 -13.97562 -13.72753 -13.24331 -13.02845 -12.99365 -12.68444 -12.56154 -12.51482 -12.21150 -11.96841 -11.93225 -11.82946 -11.40804 -11.15411 -11.09334 -10.98015 -10.46019 -10.38105 -10.17469 -9.12333 -8.51241 -6.24339 1.53536 1.60224 1.79173 2.58240 3.12382 3.25723 3.56751 3.77081 3.82540 4.04279 4.14505 4.24816 4.33037 4.42449 4.45637 4.49846 4.55260 4.61475 4.67742 4.71135 4.82253 4.84543 4.86622 4.95605 5.02995 5.07345 5.08429 5.13952 5.20238 5.24087 5.36715 5.41865 5.47154 5.50559 5.52550 5.63389 6.20459 6.30212 6.35896 6.60627 6.76650 7.56799 8.88084 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.006826 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.242173 B = 4101.043670 C = 4672.421936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.107 4.107 4 C -0.100 4.100 5 C 0.088 3.912 6 N -0.674 5.674 7 C 0.119 3.881 8 C 0.002 3.998 9 C -0.574 4.574 10 H 0.042 0.958 11 C -0.020 4.020 12 N -0.933 5.933 13 Si 1.106 2.894 14 H -0.288 1.288 15 H -0.272 1.272 16 H -0.276 1.276 17 C -0.165 4.165 18 C -0.188 4.188 19 C -0.144 4.144 20 C -0.106 4.106 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.338 0.662 31 H -0.004 1.004 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.061 0.939 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -0.655 15.232 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.022 4.022 6 N -0.303 5.303 7 C -0.011 4.011 8 C 0.001 3.999 9 C -0.612 4.612 10 H 0.060 0.940 11 C -0.219 4.219 12 N -0.569 5.569 13 Si 0.930 3.070 14 H -0.214 1.214 15 H -0.197 1.197 16 H -0.202 1.202 17 C -0.203 4.203 18 C -0.226 4.226 19 C -0.184 4.184 20 C -0.144 4.144 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.014 0.986 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.107 -1.036 14.363 14.401 hybrid contribution 0.825 0.026 0.155 0.840 sum 0.719 -1.010 14.518 14.570 Atomic orbital electron populations 1.21933 0.95328 1.01654 1.01865 1.21096 0.96000 0.95932 0.97513 1.21542 1.00605 0.95154 0.97235 1.21456 1.00790 0.98733 0.92780 1.21658 0.98525 0.91067 0.90947 1.60533 1.05897 1.60520 1.03369 1.21236 0.94181 0.95381 0.90276 1.19193 0.93937 0.93028 0.93720 1.21509 0.92195 1.19973 1.27541 0.93982 1.26965 1.07084 0.92462 0.95423 1.70841 1.02107 1.37048 1.46935 0.83054 0.71475 0.76343 0.76140 1.21382 1.19743 1.20158 1.22739 1.03109 0.93319 1.01097 1.22708 0.97456 1.06864 0.95557 1.22222 1.00956 0.97194 0.97978 1.21494 1.00405 0.98746 0.93726 0.93365 0.92729 0.91731 0.89742 0.91847 0.90400 0.92236 0.92095 0.92078 0.84366 0.98567 0.93474 0.92563 0.90898 0.89335 0.90282 0.92291 0.92086 0.95106 0.92000 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.50 71.98 0.61 -2.36 16 2 C -0.09 -1.71 3.19 -10.79 -0.03 -1.74 16 3 C -0.11 -2.17 5.45 30.59 0.17 -2.00 16 4 C -0.10 -2.61 5.25 30.59 0.16 -2.45 16 5 C 0.09 2.81 2.47 44.91 0.11 2.92 16 6 N -0.67 -26.82 6.21 -491.55 -3.05 -29.87 16 7 C 0.12 5.38 5.29 86.30 0.46 5.84 16 8 C 0.00 0.10 1.14 -52.93 -0.06 0.04 16 9 C -0.57 -31.70 8.24 25.60 0.21 -31.48 16 10 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 11 C -0.02 -1.10 5.39 84.66 0.46 -0.64 16 12 N -0.93 -55.82 13.57 21.45 0.29 -55.53 16 13 Si 1.11 50.20 29.91 68.60 2.05 52.25 16 14 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 C -0.17 -7.35 9.96 30.62 0.30 -7.05 16 18 C -0.19 -8.91 8.73 30.62 0.27 -8.64 16 19 C -0.14 -4.44 4.90 30.60 0.15 -4.29 16 20 C -0.11 -2.49 5.45 30.59 0.17 -2.33 16 21 H 0.05 1.12 4.81 -2.39 -0.01 1.11 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.63 6.43 -2.38 -0.02 1.62 16 29 H 0.06 1.99 7.72 -2.39 -0.02 1.98 16 30 H 0.34 14.59 7.96 -89.70 -0.71 13.88 16 31 H 0.00 -0.20 7.26 -2.39 -0.02 -0.21 16 32 H 0.05 2.00 7.89 -2.39 -0.02 1.98 16 33 H 0.26 15.89 6.20 -92.70 -0.57 15.32 16 34 H 0.07 3.26 8.14 -2.38 -0.02 3.24 16 35 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 37 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.06 1.92 6.42 -2.39 -0.02 1.90 16 39 H 0.03 1.11 7.55 -2.39 -0.02 1.09 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -59.98 312.73 2.72 -57.27 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.46 Total: 30.09 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 2.97 Total: -54.20 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.76 Total: -85.40 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -59.98 2.72 -57.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.430 kcal (2) G-P(sol) polarization free energy of solvation -59.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds