Wall clock time and date at job start Sun Mar 29 2020 21:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86811 * 119.99648 * 2 1 4 4 H 1.48503 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46995 * 299.99580 * 3 2 1 6 6 H 1.48497 * 109.46913 * 59.99855 * 3 2 1 7 7 C 1.37869 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00328 * 171.59665 * 7 2 1 9 9 C 1.50702 * 119.99825 * 351.60137 * 7 2 1 10 10 C 1.52998 * 115.55252 * 84.60434 * 9 7 2 11 11 N 1.46904 * 109.46976 * 35.70841 * 10 9 7 12 12 C 1.46897 * 110.99535 * 184.93005 * 11 10 9 13 13 C 1.54243 * 108.89732 * 276.39379 * 12 11 10 14 14 C 1.50549 * 108.48551 * 159.18159 * 13 12 11 15 15 C 1.54072 * 112.41470 * 94.26740 * 14 13 12 16 16 C 1.54062 * 112.81799 * 318.28032 * 15 14 13 17 17 C 1.50476 * 112.49230 * 318.28381 * 16 15 14 18 18 C 1.45546 * 108.89459 * 153.60902 * 12 11 10 19 19 C 1.53002 * 117.51348 * 230.30615 * 9 7 2 20 20 C 1.52995 * 59.99978 * 107.48178 * 19 9 7 21 21 H 0.97008 * 120.00496 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47347 * 155.71000 * 10 9 7 23 23 H 1.08999 * 109.47134 * 275.70719 * 10 9 7 24 24 H 1.00902 * 110.99998 * 60.97712 * 11 10 9 25 25 H 1.08994 * 108.87815 * 35.00408 * 12 11 10 26 26 H 1.09000 * 109.62956 * 278.98193 * 13 12 11 27 27 H 1.09000 * 109.62829 * 39.55421 * 13 12 11 28 28 H 1.08998 * 108.92503 * 333.51489 * 14 13 12 29 29 H 1.08997 * 108.92165 * 215.01621 * 14 13 12 30 30 H 1.09006 * 108.81482 * 197.41744 * 15 14 13 31 31 H 1.08998 * 108.72746 * 79.08570 * 15 14 13 32 32 H 1.09002 * 108.87961 * 197.50971 * 16 15 14 33 33 H 1.08998 * 108.87755 * 79.06043 * 16 15 14 34 34 H 1.08997 * 109.63564 * 334.44337 * 17 16 15 35 35 H 1.09002 * 109.62484 * 213.85948 * 17 16 15 36 36 H 1.09002 * 108.88971 * 303.43674 * 18 12 11 37 37 H 1.08999 * 108.89840 * 62.02190 * 18 12 11 38 38 H 1.09003 * 117.49621 * 214.96463 * 19 9 7 39 39 H 1.08995 * 117.50437 * 359.97438 * 19 9 7 40 40 H 1.09004 * 117.49600 * 252.50786 * 20 19 9 41 41 H 1.09000 * 117.52577 * 107.47847 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0759 -1.1990 -0.1361 9 6 1.2632 -2.4920 0.1917 10 6 0.6530 -3.0962 -1.0745 11 7 1.5400 -2.8383 -2.2167 12 6 0.9316 -3.3017 -3.4708 13 6 1.2076 -4.8106 -3.6323 14 6 0.1967 -5.3809 -4.5911 15 6 0.7197 -5.4234 -6.0397 16 6 1.4948 -4.1512 -6.4327 17 6 0.8355 -2.8964 -5.9276 18 6 1.4712 -2.5200 -4.5736 19 6 1.7942 -3.4597 1.2512 20 6 0.5004 -2.6832 1.5042 21 1 -0.4851 0.8401 -0.0004 22 1 0.5334 -4.1716 -0.9428 23 1 -0.3205 -2.6426 -1.2608 24 1 2.4445 -3.2626 -2.0752 25 1 -0.1456 -3.1434 -3.4198 26 1 2.2129 -4.9589 -4.0265 27 1 1.1138 -5.3055 -2.6656 28 1 -0.7048 -4.7691 -4.5596 29 1 -0.0557 -6.3938 -4.2775 30 1 -0.1270 -5.5421 -6.7159 31 1 1.3791 -6.2845 -6.1486 32 1 1.5626 -4.1011 -7.5194 33 1 2.5022 -4.2107 -6.0207 34 1 -0.2321 -3.0716 -5.7947 35 1 0.9907 -2.0882 -6.6423 36 1 1.2883 -1.4630 -4.3796 37 1 2.5468 -2.6868 -4.6315 38 1 1.7086 -4.5269 1.0462 39 1 2.6800 -3.1579 1.8099 40 1 0.5350 -1.8702 2.2295 41 1 -0.4364 -3.2390 1.4654 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:05 Heat of formation + Delta-G solvation = 5.714271 kcal Electronic energy + Delta-G solvation = -17699.090226 eV Core-core repulsion = 15192.687241 eV Total energy + Delta-G solvation = -2506.402985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.01065 -36.65535 -34.14087 -31.94499 -31.71937 -29.83483 -25.57734 -24.87133 -24.30823 -22.53044 -21.03743 -20.14615 -19.15793 -18.86157 -16.05593 -15.65406 -14.85995 -14.51492 -14.39429 -13.95744 -13.92656 -13.23404 -13.01933 -12.76767 -12.40286 -11.99329 -11.91416 -11.59864 -11.42079 -10.88049 -10.77142 -10.63765 -10.56543 -10.41824 -10.32269 -10.21249 -10.16650 -10.04395 -9.90284 -9.32770 -8.70000 -8.22970 -7.94377 -7.24488 -5.83974 -3.83073 3.39917 3.47903 3.51771 4.56984 4.72381 4.84448 4.97825 5.17494 5.29939 5.40646 5.42251 5.44429 5.49186 5.66213 5.69675 5.84359 5.87156 6.08881 6.17253 6.21313 6.26364 6.29554 6.31679 6.33232 6.37589 6.55405 6.55663 6.63092 6.65628 6.77194 6.81251 6.91851 7.06650 7.17186 7.53298 7.56938 8.07656 8.19975 8.41983 8.66869 9.12325 9.78739 11.26948 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026230 B = 0.007026 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.211618 B = 3984.197099 C = 4699.938095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.074 3.926 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.461 4.461 8 H 0.056 0.944 9 C 0.048 3.952 10 C 0.112 3.888 11 N -0.653 5.653 12 C 0.091 3.909 13 C -0.148 4.148 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.219 4.219 20 C -0.161 4.161 21 H 0.254 0.746 22 H -0.009 1.009 23 H 0.066 0.934 24 H 0.330 0.670 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -8.848 -9.912 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.128 4.128 3 Si 0.713 3.287 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.048 3.952 10 C -0.017 4.017 11 N -0.281 5.281 12 C -0.019 4.019 13 C -0.188 4.188 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.142 4.142 19 C -0.256 4.256 20 C -0.199 4.199 21 H 0.064 0.936 22 H 0.009 0.991 23 H 0.084 0.916 24 H 0.147 0.853 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.417 -8.052 -9.976 12.827 hybrid contribution 0.410 -0.106 0.167 0.455 sum 0.827 -8.158 -9.809 12.785 Atomic orbital electron populations 1.70024 1.05800 1.25699 1.50491 1.24828 0.94596 0.98403 0.94960 0.86674 0.80293 0.84569 0.77175 1.19963 1.21329 1.21491 1.20156 0.92773 0.88409 1.48568 0.92584 1.18944 0.96871 0.93891 0.85528 1.21460 0.96194 0.93189 0.90866 1.60461 1.05051 1.62105 1.00491 1.20495 0.99242 0.90503 0.91667 1.22155 0.99422 0.98354 0.98833 1.21278 0.99153 1.00378 0.94414 1.21894 0.99427 0.97499 0.96329 1.21348 0.99775 0.94602 0.99727 1.21313 1.00310 0.96705 0.97158 1.20431 0.99794 1.01193 0.92831 1.23085 0.98119 0.95410 1.09024 1.22494 0.92338 1.01084 1.03980 0.93640 0.99081 0.91551 0.85276 0.91651 0.91918 0.92305 0.92136 0.93022 0.92768 0.92827 0.92981 0.92118 0.91923 0.92267 0.91082 0.92587 0.92185 0.90647 0.90221 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.01 55.43 0.72 -24.71 16 2 C 0.07 2.06 5.38 -17.83 -0.10 1.96 16 3 Si 0.88 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.46 -12.55 8.06 -34.44 -0.28 -12.82 16 8 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 9 C 0.05 1.19 1.75 -155.66 -0.27 0.92 16 10 C 0.11 2.51 5.57 -3.82 -0.02 2.49 16 11 N -0.65 -13.28 5.35 -109.79 -0.59 -13.87 16 12 C 0.09 1.52 1.98 -70.58 -0.14 1.38 16 13 C -0.15 -2.10 4.91 -27.31 -0.13 -2.23 16 14 C -0.11 -1.40 5.32 -27.40 -0.15 -1.55 16 15 C -0.11 -1.23 5.85 -25.62 -0.15 -1.38 16 16 C -0.12 -1.31 5.31 -27.44 -0.15 -1.45 16 17 C -0.12 -1.47 5.61 -27.34 -0.15 -1.63 16 18 C -0.10 -1.62 4.77 -29.60 -0.14 -1.76 16 19 C -0.22 -4.83 9.88 -26.73 -0.26 -5.10 16 20 C -0.16 -3.84 9.55 -26.73 -0.26 -4.10 16 21 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 22 H -0.01 -0.18 7.06 -51.93 -0.37 -0.55 16 23 H 0.07 1.65 7.92 -51.93 -0.41 1.24 16 24 H 0.33 6.46 8.54 -39.29 -0.34 6.13 16 25 H 0.07 1.18 7.01 -51.93 -0.36 0.82 16 26 H 0.06 0.85 6.97 -51.93 -0.36 0.49 16 27 H 0.06 0.89 7.15 -51.93 -0.37 0.52 16 28 H 0.06 0.78 6.63 -51.93 -0.34 0.44 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.70 6.62 -51.93 -0.34 0.36 16 34 H 0.06 0.80 6.98 -51.93 -0.36 0.44 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.85 7.46 -51.93 -0.39 0.46 16 38 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 39 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -27.91 312.96 -9.78 -37.70 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.42 Total: 4.71 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -2.20 Total: -25.27 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.13 Total: -38.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.91 -9.78 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.413 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds