Wall clock time and date at job start Sun Mar 29 2020 21:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86811 * 119.99648 * 2 1 4 4 H 1.48503 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46995 * 299.99580 * 3 2 1 6 6 H 1.48497 * 109.46913 * 59.99855 * 3 2 1 7 7 C 1.37869 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00328 * 171.59665 * 7 2 1 9 9 C 1.50702 * 119.99825 * 351.60137 * 7 2 1 10 10 C 1.52998 * 115.55252 * 84.60434 * 9 7 2 11 11 N 1.46904 * 109.46976 * 35.70841 * 10 9 7 12 12 C 1.46897 * 110.99535 * 184.93005 * 11 10 9 13 13 C 1.54243 * 108.89732 * 276.39379 * 12 11 10 14 14 C 1.50549 * 108.48551 * 159.18159 * 13 12 11 15 15 C 1.54072 * 112.41470 * 94.26740 * 14 13 12 16 16 C 1.54062 * 112.81799 * 318.28032 * 15 14 13 17 17 C 1.50476 * 112.49230 * 318.28381 * 16 15 14 18 18 C 1.45546 * 108.89459 * 153.60902 * 12 11 10 19 19 C 1.53002 * 117.51348 * 230.30615 * 9 7 2 20 20 C 1.52995 * 59.99978 * 107.48178 * 19 9 7 21 21 H 0.97008 * 120.00496 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47347 * 155.71000 * 10 9 7 23 23 H 1.08999 * 109.47134 * 275.70719 * 10 9 7 24 24 H 1.00902 * 110.99998 * 60.97712 * 11 10 9 25 25 H 1.08994 * 108.87815 * 35.00408 * 12 11 10 26 26 H 1.09000 * 109.62956 * 278.98193 * 13 12 11 27 27 H 1.09000 * 109.62829 * 39.55421 * 13 12 11 28 28 H 1.08998 * 108.92503 * 333.51489 * 14 13 12 29 29 H 1.08997 * 108.92165 * 215.01621 * 14 13 12 30 30 H 1.09006 * 108.81482 * 197.41744 * 15 14 13 31 31 H 1.08998 * 108.72746 * 79.08570 * 15 14 13 32 32 H 1.09002 * 108.87961 * 197.50971 * 16 15 14 33 33 H 1.08998 * 108.87755 * 79.06043 * 16 15 14 34 34 H 1.08997 * 109.63564 * 334.44337 * 17 16 15 35 35 H 1.09002 * 109.62484 * 213.85948 * 17 16 15 36 36 H 1.09002 * 108.88971 * 303.43674 * 18 12 11 37 37 H 1.08999 * 108.89840 * 62.02190 * 18 12 11 38 38 H 1.09003 * 117.49621 * 214.96463 * 19 9 7 39 39 H 1.08995 * 117.50437 * 359.97438 * 19 9 7 40 40 H 1.09004 * 117.49600 * 252.50786 * 20 19 9 41 41 H 1.09000 * 117.52577 * 107.47847 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0759 -1.1990 -0.1361 9 6 1.2632 -2.4920 0.1917 10 6 0.6530 -3.0962 -1.0745 11 7 1.5400 -2.8383 -2.2167 12 6 0.9316 -3.3017 -3.4708 13 6 1.2076 -4.8106 -3.6323 14 6 0.1967 -5.3809 -4.5911 15 6 0.7197 -5.4234 -6.0397 16 6 1.4948 -4.1512 -6.4327 17 6 0.8355 -2.8964 -5.9276 18 6 1.4712 -2.5200 -4.5736 19 6 1.7942 -3.4597 1.2512 20 6 0.5004 -2.6832 1.5042 21 1 -0.4851 0.8401 -0.0004 22 1 0.5334 -4.1716 -0.9428 23 1 -0.3205 -2.6426 -1.2608 24 1 2.4445 -3.2626 -2.0752 25 1 -0.1456 -3.1434 -3.4198 26 1 2.2129 -4.9589 -4.0265 27 1 1.1138 -5.3055 -2.6656 28 1 -0.7048 -4.7691 -4.5596 29 1 -0.0557 -6.3938 -4.2775 30 1 -0.1270 -5.5421 -6.7159 31 1 1.3791 -6.2845 -6.1486 32 1 1.5626 -4.1011 -7.5194 33 1 2.5022 -4.2107 -6.0207 34 1 -0.2321 -3.0716 -5.7947 35 1 0.9907 -2.0882 -6.6423 36 1 1.2883 -1.4630 -4.3796 37 1 2.5468 -2.6868 -4.6315 38 1 1.7086 -4.5269 1.0462 39 1 2.6800 -3.1579 1.8099 40 1 0.5350 -1.8702 2.2295 41 1 -0.4364 -3.2390 1.4654 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:05 Heat of formation + Delta-G solvation = -8.915009 kcal Electronic energy + Delta-G solvation = -17699.724599 eV Core-core repulsion = 15192.687241 eV Total energy + Delta-G solvation = -2507.037358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25133 -38.42599 -35.51802 -33.83830 -33.01367 -31.18378 -27.53177 -26.38435 -25.48049 -23.87673 -22.88428 -21.53536 -20.74834 -20.10453 -17.94030 -16.98131 -16.55764 -16.10149 -15.78048 -15.47948 -15.13424 -14.81516 -14.53360 -13.97030 -13.85535 -13.54277 -13.25091 -13.01105 -12.88391 -12.86258 -12.66429 -12.31808 -12.01234 -11.89516 -11.73052 -11.49503 -11.37589 -11.19445 -11.17221 -11.00369 -10.66472 -10.29788 -9.85572 -8.82020 -7.96833 -6.00084 1.42573 1.45582 1.55049 2.52011 3.33179 3.39063 3.57807 3.73442 3.97459 4.12875 4.27287 4.32913 4.40482 4.41761 4.51027 4.56051 4.59193 4.70444 4.77641 4.81680 4.94916 4.96923 5.01108 5.10676 5.13887 5.21287 5.29690 5.32404 5.34015 5.36168 5.43231 5.51011 5.58774 5.61657 5.65218 5.74215 5.91938 6.45433 6.66801 6.89056 7.02124 7.63735 9.13408 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026230 B = 0.007026 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.211618 B = 3984.197099 C = 4699.938095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.027 3.973 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.464 4.464 8 H 0.047 0.953 9 C 0.019 3.981 10 C 0.129 3.871 11 N -0.672 5.672 12 C 0.095 3.905 13 C -0.136 4.136 14 C -0.114 4.114 15 C -0.111 4.111 16 C -0.115 4.115 17 C -0.110 4.110 18 C -0.101 4.101 19 C -0.190 4.190 20 C -0.169 4.169 21 H 0.252 0.748 22 H 0.009 0.991 23 H 0.032 0.968 24 H 0.334 0.666 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 -10.292 -11.128 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.171 4.171 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.503 4.503 8 H 0.065 0.935 9 C 0.018 3.982 10 C 0.000 4.000 11 N -0.301 5.301 12 C -0.014 4.014 13 C -0.175 4.175 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.139 4.139 19 C -0.227 4.227 20 C -0.207 4.207 21 H 0.061 0.939 22 H 0.027 0.973 23 H 0.050 0.950 24 H 0.152 0.848 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.341 -9.506 -11.195 14.748 hybrid contribution 0.138 0.336 0.558 0.666 sum 1.479 -9.170 -10.637 14.122 Atomic orbital electron populations 1.70134 1.06934 1.26066 1.51928 1.25456 0.95279 1.01219 0.95181 0.85803 0.79407 0.81209 0.76891 1.19352 1.21541 1.21268 1.20366 0.92471 0.89827 1.47591 0.93487 1.19109 0.98044 0.94258 0.86787 1.21119 0.94672 0.93524 0.90701 1.60379 1.05209 1.63325 1.01147 1.20509 0.97733 0.92775 0.90400 1.21994 1.00644 0.95777 0.99087 1.21263 0.98136 1.00604 0.95203 1.21879 1.00084 0.97706 0.95154 1.21326 0.99362 0.93742 1.00853 1.21265 0.99997 0.98100 0.95440 1.20389 1.00291 0.99000 0.94183 1.23069 0.96860 0.96380 1.06418 1.22412 0.93874 1.01251 1.03187 0.93944 0.97343 0.94963 0.84795 0.93714 0.90854 0.93204 0.93154 0.91864 0.91584 0.91502 0.91098 0.92340 0.92219 0.91339 0.94312 0.92156 0.89354 0.90494 0.92517 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.70 13.01 21.44 0.28 -53.42 16 2 C 0.03 1.54 5.38 84.65 0.46 1.99 16 3 Si 0.94 45.16 29.55 68.60 2.03 47.19 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.46 -25.45 8.06 25.60 0.21 -25.24 16 8 H 0.05 2.60 7.83 -2.91 -0.02 2.58 16 9 C 0.02 0.92 1.75 -52.93 -0.09 0.83 16 10 C 0.13 5.82 5.57 86.30 0.48 6.30 16 11 N -0.67 -27.46 5.35 -501.27 -2.68 -30.14 16 12 C 0.10 3.18 1.98 43.06 0.09 3.27 16 13 C -0.14 -3.63 4.91 30.22 0.15 -3.48 16 14 C -0.11 -2.56 5.32 30.16 0.16 -2.40 16 15 C -0.11 -2.04 5.85 31.32 0.18 -1.86 16 16 C -0.12 -2.25 5.31 30.14 0.16 -2.09 16 17 C -0.11 -2.61 5.61 30.20 0.17 -2.44 16 18 C -0.10 -3.09 4.77 28.74 0.14 -2.95 16 19 C -0.19 -8.08 9.88 30.59 0.30 -7.77 16 20 C -0.17 -8.06 9.55 30.59 0.29 -7.77 16 21 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 22 H 0.01 0.35 7.06 -2.38 -0.02 0.34 16 23 H 0.03 1.65 7.92 -2.39 -0.02 1.63 16 24 H 0.33 12.94 8.54 -89.69 -0.77 12.18 16 25 H 0.04 1.66 7.01 -2.39 -0.02 1.65 16 26 H 0.07 1.81 6.97 -2.39 -0.02 1.80 16 27 H 0.05 1.42 7.15 -2.39 -0.02 1.40 16 28 H 0.05 1.24 6.63 -2.39 -0.02 1.22 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.18 6.62 -2.39 -0.02 1.17 16 34 H 0.06 1.46 6.98 -2.39 -0.02 1.44 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.78 7.46 -2.39 -0.02 1.76 16 38 H 0.09 3.25 8.06 -2.39 -0.02 3.24 16 39 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.06 2.93 8.14 -2.38 -0.02 2.91 16 41 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -59.80 312.96 2.53 -57.28 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.22 Total: 22.72 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 2.69 Total: -43.62 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.40 Total: -83.56 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -59.80 2.53 -57.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.362 kcal (2) G-P(sol) polarization free energy of solvation -59.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds