Wall clock time and date at job start Sun Mar 29 2020 21:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48501 * 109.47027 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46901 * 120.00210 * 3 2 1 6 6 H 1.48505 * 109.47437 * 240.00290 * 3 2 1 7 7 C 1.37875 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00050 * 185.24432 * 7 2 1 9 9 C 1.50702 * 119.99872 * 5.24209 * 7 2 1 10 10 C 1.53002 * 115.55136 * 275.15074 * 9 7 2 11 11 N 1.46901 * 109.47065 * 294.81221 * 10 9 7 12 12 C 1.46896 * 110.99848 * 185.37331 * 11 10 9 13 13 C 1.53003 * 109.47453 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.46620 * 294.99944 * 13 12 11 15 15 C 1.53003 * 109.46985 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47088 * 59.99661 * 15 14 13 17 17 C 1.53001 * 109.46996 * 300.00112 * 16 15 14 18 18 C 1.52994 * 109.47215 * 60.00423 * 17 16 15 19 19 C 1.53007 * 117.49655 * 129.48342 * 9 7 2 20 20 C 1.53002 * 117.49641 * 60.82549 * 9 7 2 21 21 H 0.96994 * 119.99693 * 354.98969 * 1 2 3 22 22 H 1.08999 * 109.46996 * 54.81311 * 10 9 7 23 23 H 1.08996 * 109.46814 * 174.80852 * 10 9 7 24 24 H 1.00896 * 111.00396 * 61.41498 * 11 10 9 25 25 H 1.08999 * 109.47050 * 299.99724 * 12 11 10 26 26 H 1.09002 * 109.47524 * 59.99308 * 12 11 10 27 27 H 1.08998 * 109.46850 * 54.99561 * 13 12 11 28 28 H 1.08998 * 109.47196 * 299.99404 * 14 13 12 29 29 H 1.08998 * 109.47423 * 59.99584 * 14 13 12 30 30 H 1.08998 * 109.46736 * 299.99771 * 15 14 13 31 31 H 1.09005 * 109.47115 * 179.97438 * 15 14 13 32 32 H 1.09007 * 109.46616 * 180.02562 * 16 15 14 33 33 H 1.08998 * 109.47242 * 60.00420 * 16 15 14 34 34 H 1.09001 * 109.47140 * 299.99754 * 17 16 15 35 35 H 1.08998 * 109.46935 * 180.02562 * 17 16 15 36 36 H 1.08997 * 109.47136 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47612 * 59.99621 * 18 17 16 38 38 H 1.09002 * 117.49659 * 359.97438 * 19 9 7 39 39 H 1.08996 * 117.49733 * 145.02426 * 19 9 7 40 40 H 1.09004 * 117.49357 * 214.97711 * 20 9 7 41 41 H 1.08996 * 117.50301 * 359.96937 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0812 -1.1960 0.0850 9 6 1.2558 -2.4964 -0.1204 10 6 0.7120 -3.0680 1.1906 11 7 1.8325 -3.4306 2.0687 12 6 1.3527 -4.1004 3.2849 13 6 2.5454 -4.4625 4.1721 14 6 3.4171 -5.4969 3.4574 15 6 4.6102 -5.8586 4.3443 16 6 4.1053 -6.4424 5.6653 17 6 3.2336 -5.4078 6.3800 18 6 2.0405 -5.0463 5.4931 19 6 1.7335 -3.4909 -1.1804 20 6 0.4268 -2.7206 -1.3866 21 1 -0.4849 0.8368 0.0734 22 1 0.0915 -2.3196 1.6835 23 1 0.1138 -3.9544 0.9799 24 1 2.3893 -2.6209 2.2975 25 1 0.6849 -3.4320 3.8283 26 1 0.8147 -5.0081 3.0116 27 1 3.1342 -3.5673 4.3724 28 1 2.8283 -6.3921 3.2571 29 1 3.7771 -5.0809 2.5165 30 1 5.1989 -4.9633 4.5441 31 1 5.2310 -6.5960 3.8353 32 1 4.9554 -6.6997 6.2973 33 1 3.5166 -7.3377 5.4654 34 1 3.8224 -4.5126 6.5799 35 1 2.8742 -5.8236 7.3213 36 1 1.4198 -4.3089 6.0021 37 1 1.4517 -5.9415 5.2932 38 1 2.5891 -3.2030 -1.7914 39 1 1.6599 -4.5524 -0.9440 40 1 -0.5058 -3.2758 -1.2858 41 1 0.4226 -1.9261 -2.1328 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:11 Heat of formation + Delta-G solvation = -12.507358 kcal Electronic energy + Delta-G solvation = -17250.411084 eV Core-core repulsion = 14743.217950 eV Total energy + Delta-G solvation = -2507.193134 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.64147 -36.77666 -34.31328 -31.87879 -30.80403 -30.50384 -26.10626 -25.10829 -23.04257 -22.27691 -20.97807 -20.64519 -19.63556 -18.89211 -15.93389 -15.39532 -14.72219 -14.54166 -14.35148 -14.18481 -13.86527 -13.72607 -13.30294 -12.68860 -12.08245 -12.03949 -11.93558 -11.56049 -11.30363 -11.08820 -10.99365 -10.91368 -10.85629 -10.71393 -10.42864 -10.23106 -10.08314 -9.88968 -9.84778 -9.30548 -8.72425 -8.37710 -8.00401 -7.39175 -5.98944 -4.05187 3.31155 3.36483 3.39314 4.42297 4.72361 4.81174 4.89670 5.09133 5.28817 5.31257 5.42004 5.56730 5.59722 5.65484 5.66886 5.74038 5.79574 5.98053 6.06902 6.10740 6.14089 6.23678 6.25229 6.32052 6.35950 6.47751 6.54396 6.63639 6.71084 6.73774 6.90744 6.91812 6.98350 7.22568 7.58124 7.62298 7.91386 8.08662 8.37111 8.54568 8.98104 9.60283 11.09090 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.005616 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.993820 B = 4984.649169 C = 5350.983008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.289 1.289 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.492 4.492 8 H 0.059 0.941 9 C 0.051 3.949 10 C 0.107 3.893 11 N -0.679 5.679 12 C 0.063 3.937 13 C -0.082 4.082 14 C -0.104 4.104 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.200 4.200 20 C -0.162 4.162 21 H 0.259 0.741 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.345 0.655 25 H 0.018 0.982 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -9.797 9.876 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.050 3.950 10 C -0.022 4.022 11 N -0.310 5.310 12 C -0.067 4.067 13 C -0.101 4.101 14 C -0.142 4.142 15 C -0.159 4.159 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.238 4.238 20 C -0.201 4.201 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.164 0.836 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.494 -10.248 9.476 14.664 hybrid contribution -0.102 1.727 0.481 1.795 sum 4.393 -8.521 9.957 13.822 Atomic orbital electron populations 1.69988 1.05846 1.26626 1.49382 1.25003 0.94776 0.98776 0.94774 0.86741 0.79650 0.83394 0.78671 1.21439 1.20321 1.20228 1.20435 0.92780 0.88811 1.50928 0.92286 1.18735 0.97345 0.93196 0.85715 1.21405 0.90811 0.95857 0.94144 1.60421 1.23211 1.32676 1.14703 1.21948 0.95315 0.98305 0.91162 1.21134 0.96649 0.98512 0.93838 1.21456 0.95580 0.98235 0.98907 1.21579 0.98196 1.00402 0.95706 1.21538 0.98938 0.98355 0.96784 1.21508 0.97029 0.99055 0.97903 1.21560 0.97285 1.00580 0.95776 1.22862 0.97819 0.95852 1.07226 1.22526 0.92191 1.01413 1.03934 0.93113 0.94922 0.94636 0.83632 0.96374 0.92167 0.91530 0.92736 0.90294 0.92263 0.92501 0.92709 0.92304 0.92185 0.92571 0.92373 0.92195 0.90984 0.91733 0.92285 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.97 12.90 55.43 0.72 -24.25 16 2 C 0.07 1.89 5.40 -17.82 -0.10 1.79 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.49 -13.24 8.33 -34.44 -0.29 -13.52 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.18 16 9 C 0.05 1.26 1.57 -155.65 -0.24 1.02 16 10 C 0.11 2.42 5.54 -3.82 -0.02 2.40 16 11 N -0.68 -13.34 5.92 -113.78 -0.67 -14.01 16 12 C 0.06 1.02 5.07 -3.82 -0.02 1.00 16 13 C -0.08 -1.13 2.33 -90.62 -0.21 -1.34 16 14 C -0.10 -1.39 5.09 -26.73 -0.14 -1.53 16 15 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 16 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 17 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 18 C -0.11 -1.33 5.21 -26.73 -0.14 -1.47 16 19 C -0.20 -4.56 9.96 -26.69 -0.27 -4.82 16 20 C -0.16 -3.94 9.42 -26.69 -0.25 -4.19 16 21 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 24 H 0.35 7.14 8.31 -39.29 -0.33 6.81 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -27.09 324.05 -10.12 -37.22 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.88 Total: 5.06 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -2.15 Total: -24.93 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.04 Total: -38.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.09 -10.12 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.711 kcal (2) G-P(sol) polarization free energy of solvation -27.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds