Wall clock time and date at job start Sun Mar 29 2020 21:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48501 * 109.47027 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46901 * 120.00210 * 3 2 1 6 6 H 1.48505 * 109.47437 * 240.00290 * 3 2 1 7 7 C 1.37875 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00050 * 185.24432 * 7 2 1 9 9 C 1.50702 * 119.99872 * 5.24209 * 7 2 1 10 10 C 1.53002 * 115.55136 * 275.15074 * 9 7 2 11 11 N 1.46901 * 109.47065 * 294.81221 * 10 9 7 12 12 C 1.46896 * 110.99848 * 185.37331 * 11 10 9 13 13 C 1.53003 * 109.47453 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.46620 * 294.99944 * 13 12 11 15 15 C 1.53003 * 109.46985 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47088 * 59.99661 * 15 14 13 17 17 C 1.53001 * 109.46996 * 300.00112 * 16 15 14 18 18 C 1.52994 * 109.47215 * 60.00423 * 17 16 15 19 19 C 1.53007 * 117.49655 * 129.48342 * 9 7 2 20 20 C 1.53002 * 117.49641 * 60.82549 * 9 7 2 21 21 H 0.96994 * 119.99693 * 354.98969 * 1 2 3 22 22 H 1.08999 * 109.46996 * 54.81311 * 10 9 7 23 23 H 1.08996 * 109.46814 * 174.80852 * 10 9 7 24 24 H 1.00896 * 111.00396 * 61.41498 * 11 10 9 25 25 H 1.08999 * 109.47050 * 299.99724 * 12 11 10 26 26 H 1.09002 * 109.47524 * 59.99308 * 12 11 10 27 27 H 1.08998 * 109.46850 * 54.99561 * 13 12 11 28 28 H 1.08998 * 109.47196 * 299.99404 * 14 13 12 29 29 H 1.08998 * 109.47423 * 59.99584 * 14 13 12 30 30 H 1.08998 * 109.46736 * 299.99771 * 15 14 13 31 31 H 1.09005 * 109.47115 * 179.97438 * 15 14 13 32 32 H 1.09007 * 109.46616 * 180.02562 * 16 15 14 33 33 H 1.08998 * 109.47242 * 60.00420 * 16 15 14 34 34 H 1.09001 * 109.47140 * 299.99754 * 17 16 15 35 35 H 1.08998 * 109.46935 * 180.02562 * 17 16 15 36 36 H 1.08997 * 109.47136 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47612 * 59.99621 * 18 17 16 38 38 H 1.09002 * 117.49659 * 359.97438 * 19 9 7 39 39 H 1.08996 * 117.49733 * 145.02426 * 19 9 7 40 40 H 1.09004 * 117.49357 * 214.97711 * 20 9 7 41 41 H 1.08996 * 117.50301 * 359.96937 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0812 -1.1960 0.0850 9 6 1.2558 -2.4964 -0.1204 10 6 0.7120 -3.0680 1.1906 11 7 1.8325 -3.4306 2.0687 12 6 1.3527 -4.1004 3.2849 13 6 2.5454 -4.4625 4.1721 14 6 3.4171 -5.4969 3.4574 15 6 4.6102 -5.8586 4.3443 16 6 4.1053 -6.4424 5.6653 17 6 3.2336 -5.4078 6.3800 18 6 2.0405 -5.0463 5.4931 19 6 1.7335 -3.4909 -1.1804 20 6 0.4268 -2.7206 -1.3866 21 1 -0.4849 0.8368 0.0734 22 1 0.0915 -2.3196 1.6835 23 1 0.1138 -3.9544 0.9799 24 1 2.3893 -2.6209 2.2975 25 1 0.6849 -3.4320 3.8283 26 1 0.8147 -5.0081 3.0116 27 1 3.1342 -3.5673 4.3724 28 1 2.8283 -6.3921 3.2571 29 1 3.7771 -5.0809 2.5165 30 1 5.1989 -4.9633 4.5441 31 1 5.2310 -6.5960 3.8353 32 1 4.9554 -6.6997 6.2973 33 1 3.5166 -7.3377 5.4654 34 1 3.8224 -4.5126 6.5799 35 1 2.8742 -5.8236 7.3213 36 1 1.4198 -4.3089 6.0021 37 1 1.4517 -5.9415 5.2932 38 1 2.5891 -3.2030 -1.7914 39 1 1.6599 -4.5524 -0.9440 40 1 -0.5058 -3.2758 -1.2858 41 1 0.4226 -1.9261 -2.1328 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:11 Heat of formation + Delta-G solvation = -25.941698 kcal Electronic energy + Delta-G solvation = -17250.993640 eV Core-core repulsion = 14743.217950 eV Total energy + Delta-G solvation = -2507.775691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.72901 -38.56534 -35.78199 -33.95689 -31.97561 -31.48818 -27.87648 -26.87802 -24.45269 -23.26685 -22.81981 -21.86751 -20.96835 -20.46304 -17.90517 -16.67335 -16.62256 -15.95867 -15.73859 -15.54105 -15.15350 -14.81015 -14.63561 -14.44963 -13.61091 -13.29208 -13.08140 -12.95297 -12.91272 -12.81960 -12.66639 -12.44762 -12.30779 -11.98837 -11.91806 -11.73311 -11.34370 -11.24751 -10.84011 -10.81548 -10.72993 -10.37594 -9.91253 -9.05646 -8.07534 -6.19054 1.41829 1.43689 1.50372 2.43459 3.20488 3.31726 3.73463 3.82008 3.96873 4.05512 4.26660 4.37928 4.46065 4.53909 4.63048 4.65243 4.69196 4.73309 4.74347 4.85096 4.88554 4.92747 5.01687 5.05595 5.08551 5.12967 5.25165 5.29310 5.33437 5.36495 5.39689 5.50018 5.64645 5.67439 5.68496 5.70356 5.81093 6.40015 6.49762 6.68110 6.90313 7.49058 8.99875 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.005616 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.993820 B = 4984.649169 C = 5350.983008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.288 1.288 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.121 3.879 11 N -0.675 5.675 12 C 0.064 3.936 13 C -0.076 4.076 14 C -0.101 4.101 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.177 4.177 20 C -0.168 4.168 21 H 0.258 0.742 22 H 0.000 1.000 23 H 0.044 0.956 24 H 0.338 0.662 25 H 0.012 0.988 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -10.807 10.995 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.773 3.227 4 H -0.214 1.214 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.025 3.975 10 C -0.008 4.008 11 N -0.305 5.305 12 C -0.065 4.065 13 C -0.095 4.095 14 C -0.138 4.138 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.214 4.214 20 C -0.206 4.206 21 H 0.067 0.933 22 H 0.018 0.982 23 H 0.062 0.938 24 H 0.155 0.845 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.483 -11.274 10.600 16.417 hybrid contribution -0.408 2.004 0.116 2.049 sum 5.075 -9.269 10.716 15.050 Atomic orbital electron populations 1.70101 1.07092 1.27184 1.50438 1.25663 0.95483 1.01771 0.94600 0.85788 0.78453 0.79620 0.78806 1.21361 1.19533 1.19983 1.20661 0.92640 0.90098 1.50568 0.92932 1.18907 0.98149 0.93527 0.86903 1.21137 0.91122 0.95008 0.93548 1.60423 1.22018 1.31971 1.16056 1.22039 0.96508 0.97788 0.90209 1.21078 0.95435 0.98496 0.94504 1.21389 0.96329 0.97841 0.98265 1.21554 0.97287 1.00606 0.96189 1.21530 0.99497 0.98235 0.96079 1.21506 0.96340 0.99193 0.98254 1.21532 0.98040 1.00625 0.94667 1.22831 0.96731 0.96457 1.05416 1.22447 0.93450 1.01453 1.03289 0.93300 0.98171 0.93791 0.84489 0.97024 0.91705 0.92418 0.92615 0.92659 0.92612 0.91701 0.91181 0.91867 0.92391 0.90915 0.92352 0.91675 0.91009 0.89685 0.91226 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.28 12.90 21.45 0.28 -52.01 16 2 C 0.02 1.35 5.40 84.65 0.46 1.81 16 3 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.50 -27.19 8.33 25.60 0.21 -26.98 16 8 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 9 C 0.03 1.28 1.57 -52.92 -0.08 1.20 16 10 C 0.12 5.53 5.54 86.30 0.48 6.01 16 11 N -0.67 -26.47 5.92 -513.89 -3.04 -29.52 16 12 C 0.06 2.06 5.07 86.30 0.44 2.50 16 13 C -0.08 -2.01 2.33 -10.79 -0.03 -2.04 16 14 C -0.10 -2.56 5.09 30.59 0.16 -2.41 16 15 C -0.12 -2.47 5.92 30.60 0.18 -2.29 16 16 C -0.12 -2.02 5.92 30.59 0.18 -1.84 16 17 C -0.12 -2.08 5.92 30.59 0.18 -1.90 16 18 C -0.11 -2.37 5.21 30.59 0.16 -2.21 16 19 C -0.18 -7.88 9.96 30.62 0.30 -7.58 16 20 C -0.17 -8.15 9.42 30.62 0.29 -7.87 16 21 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 22 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 23 H 0.04 1.90 8.08 -2.39 -0.02 1.88 16 24 H 0.34 14.12 8.31 -89.70 -0.74 13.38 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.66 7.75 -2.39 -0.02 1.64 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 41 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -57.04 324.05 2.40 -54.63 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.21 Total: 25.06 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 2.93 Total: -43.59 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.77 Total: -81.52 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -57.04 2.40 -54.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.692 kcal (2) G-P(sol) polarization free energy of solvation -57.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds