Wall clock time and date at job start Sun Mar 29 2020 22:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.05711 * 2 1 4 4 C 1.54264 * 110.03438 * 238.58100 * 2 1 3 5 5 C 1.54884 * 104.19646 * 217.10507 * 4 2 1 6 6 C 1.54886 * 102.75077 * 37.94379 * 5 4 2 7 7 C 1.53879 * 110.03219 * 121.41440 * 2 1 3 8 8 H 1.09003 * 110.03444 * 238.61918 * 7 2 1 9 9 N 1.46896 * 110.03351 * 359.97438 * 7 2 1 10 10 C 1.46898 * 111.00600 * 194.78804 * 9 7 2 11 11 C 1.53000 * 109.47596 * 185.12675 * 10 9 7 12 12 C 1.50697 * 115.56083 * 268.56659 * 11 10 9 13 13 H 1.07998 * 119.99738 * 142.21779 * 12 11 10 14 14 C 1.37877 * 119.99862 * 322.21899 * 12 11 10 15 15 N 1.31516 * 120.00365 * 343.81515 * 14 12 11 16 16 Si 1.86805 * 119.99855 * 163.81481 * 14 12 11 17 17 H 1.48506 * 109.46943 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.47417 * 120.00089 * 16 14 12 19 19 H 1.48506 * 109.47092 * 240.00297 * 16 14 12 20 20 C 1.53001 * 117.49728 * 54.25880 * 11 10 9 21 21 C 1.52995 * 60.03448 * 107.49991 * 20 11 10 22 22 H 1.09003 * 109.46900 * 304.92324 * 1 2 3 23 23 H 1.08999 * 109.47202 * 64.92351 * 1 2 3 24 24 H 1.09002 * 109.47334 * 184.92889 * 1 2 3 25 25 H 1.08997 * 109.47485 * 181.41631 * 3 2 1 26 26 H 1.09004 * 109.47105 * 301.41934 * 3 2 1 27 27 H 1.09002 * 109.46977 * 61.41399 * 3 2 1 28 28 H 1.09000 * 110.48170 * 335.78818 * 4 2 1 29 29 H 1.08998 * 110.48278 * 98.29520 * 4 2 1 30 30 H 1.08998 * 110.75599 * 156.25500 * 5 4 2 31 31 H 1.08997 * 110.76000 * 279.44379 * 5 4 2 32 32 H 1.09001 * 110.48869 * 203.37981 * 6 5 4 33 33 H 1.08997 * 110.49195 * 80.73300 * 6 5 4 34 34 H 1.00906 * 111.00082 * 318.74144 * 9 7 2 35 35 H 1.09001 * 109.46976 * 65.12153 * 10 9 7 36 36 H 1.09004 * 109.46536 * 305.13038 * 10 9 7 37 37 H 0.96998 * 119.99937 * 185.01867 * 15 14 12 38 38 H 1.08996 * 117.49788 * 359.97438 * 20 11 10 39 39 H 1.09002 * 117.49417 * 215.00429 * 20 11 10 40 40 H 1.08993 * 117.50034 * 107.47276 * 21 20 11 41 41 H 1.08996 * 117.50056 * 252.47437 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5007 -0.7190 6 6 2.8875 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2338 8 1 2.6860 -0.0951 1.8330 9 7 0.9329 -1.2458 2.0410 10 6 1.3835 -1.6526 3.3787 11 6 0.2141 -2.2764 4.1431 12 6 -0.5983 -1.3223 4.9802 13 1 -1.6698 -1.4398 5.0462 14 6 0.0264 -0.2995 5.6618 15 7 1.3277 -0.3327 5.8493 16 14 -0.9755 1.1336 6.3190 17 1 -2.4071 0.9343 5.9778 18 1 -0.8236 1.2085 7.7942 19 1 -0.4925 2.3974 5.7067 20 6 -0.5259 -3.4381 3.4770 21 6 0.3942 -3.7021 4.6705 22 1 -0.3633 0.5883 0.8426 23 1 -0.3633 0.4355 -0.9308 24 1 -0.3634 -1.0239 0.0883 25 1 3.1443 1.4262 -0.0254 26 1 1.6761 1.9623 -0.8770 27 1 1.7174 1.9471 0.9024 28 1 1.3142 -1.4660 -1.5965 29 1 2.3275 -0.0538 -2.0262 30 1 3.5325 -2.3679 -1.3421 31 1 4.1718 -0.8299 -0.6781 32 1 3.7637 -2.1036 1.3311 33 1 2.2772 -2.8425 0.6573 34 1 0.2006 -0.5542 2.1010 35 1 1.7475 -0.7797 3.9205 36 1 2.1872 -2.3830 3.2848 37 1 1.7573 0.3480 6.3905 38 1 -0.1800 -3.7577 2.4941 39 1 -1.6006 -3.5120 3.6439 40 1 -0.0751 -3.9493 5.6227 41 1 1.3455 -4.1960 4.4730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086874774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:14 Heat of formation + Delta-G solvation = 10.286725 kcal Electronic energy + Delta-G solvation = -18015.365905 eV Core-core repulsion = 15509.161197 eV Total energy + Delta-G solvation = -2506.204708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.15991 -36.57011 -32.82329 -32.15291 -31.94844 -27.25277 -27.00908 -25.55899 -24.37766 -22.96912 -20.94451 -20.18920 -18.82884 -17.97367 -16.12014 -15.32250 -15.00442 -14.74461 -14.46814 -13.76866 -13.39064 -13.15916 -12.84935 -12.70447 -12.36957 -11.85247 -11.54478 -11.32263 -11.19434 -10.95858 -10.90012 -10.74879 -10.68928 -10.43736 -10.29060 -10.23110 -10.20257 -10.09187 -9.99180 -9.09210 -8.90870 -8.57529 -8.08075 -7.25626 -6.03425 -4.04719 3.23522 3.33532 3.38351 4.36493 4.81154 4.88052 4.89145 5.05012 5.30609 5.53827 5.57669 5.63617 5.74718 5.77539 5.90453 5.94022 5.97811 6.06850 6.18481 6.20255 6.25657 6.27581 6.32820 6.47312 6.53961 6.62387 6.64065 6.74312 6.75270 6.78625 6.92823 7.07332 7.15628 7.26933 7.52515 7.65410 8.02974 8.23236 8.42223 8.56278 8.93049 9.51558 10.96147 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.008193 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.440959 B = 3416.877802 C = 3988.933436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.124 4.124 6 C -0.112 4.112 7 C 0.092 3.908 8 H 0.035 0.965 9 N -0.681 5.681 10 C 0.086 3.914 11 C 0.057 3.943 12 C -0.487 4.487 13 H 0.060 0.940 14 C 0.068 3.932 15 N -0.875 5.875 16 Si 0.885 3.115 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.283 1.283 20 C -0.192 4.192 21 C -0.206 4.206 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.341 0.659 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 1.195 -11.605 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.146 4.146 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.019 4.019 8 H 0.053 0.947 9 N -0.314 5.314 10 C -0.042 4.042 11 C 0.056 3.944 12 C -0.525 4.525 13 H 0.078 0.922 14 C -0.134 4.134 15 N -0.513 5.513 16 Si 0.713 3.287 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.209 1.209 20 C -0.229 4.229 21 C -0.244 4.244 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.818 0.723 -11.803 12.157 hybrid contribution -0.241 1.528 0.996 1.840 sum 2.578 2.251 -10.807 11.336 Atomic orbital electron populations 1.21804 0.94148 1.03147 1.00264 1.21242 0.96086 0.94484 0.95028 1.21922 1.00553 0.95787 1.01339 1.22395 0.97242 0.98515 0.96465 1.22441 0.97417 0.99362 0.96935 1.22387 0.98751 0.99082 0.94760 1.22082 0.92664 0.94042 0.93088 0.94734 1.60859 1.09996 1.44386 1.16197 1.21678 0.95385 1.00942 0.86168 1.18894 0.94542 0.85800 0.95140 1.20680 0.93197 1.10447 1.28154 0.92221 1.24981 0.94792 0.97938 0.95710 1.69920 1.09134 1.34622 1.37576 0.86642 0.80810 0.82794 0.78475 1.19587 1.21093 1.20896 1.22670 0.96227 1.08688 0.95336 1.22968 0.99002 1.05793 0.96668 0.92723 0.93848 0.90664 0.92976 0.93063 0.92775 0.91565 0.92418 0.92154 0.92181 0.92685 0.90671 0.83810 0.90069 0.94809 0.92980 0.90815 0.91523 0.90959 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.09 37.16 0.26 -1.70 16 2 C -0.07 -0.97 0.94 -153.39 -0.14 -1.12 16 3 C -0.14 -1.84 8.15 37.16 0.30 -1.54 16 4 C -0.11 -1.37 5.90 -25.08 -0.15 -1.51 16 5 C -0.12 -1.57 6.91 -24.74 -0.17 -1.74 16 6 C -0.11 -1.75 5.91 -25.07 -0.15 -1.89 16 7 C 0.09 1.58 2.86 -66.59 -0.19 1.39 16 8 H 0.03 0.66 7.54 -51.93 -0.39 0.26 16 9 N -0.68 -13.55 4.99 -105.54 -0.53 -14.08 16 10 C 0.09 2.02 5.28 -3.83 -0.02 2.00 16 11 C 0.06 1.42 1.98 -155.62 -0.31 1.11 16 12 C -0.49 -13.24 9.00 -34.44 -0.31 -13.55 16 13 H 0.06 1.64 7.87 -52.49 -0.41 1.23 16 14 C 0.07 1.83 5.06 -17.82 -0.09 1.74 16 15 N -0.88 -24.25 11.03 55.43 0.61 -23.63 16 16 Si 0.89 20.75 29.57 -169.99 -5.03 15.72 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.19 -4.33 9.71 -26.73 -0.26 -4.59 16 21 C -0.21 -4.90 9.88 -26.69 -0.26 -5.16 16 22 H 0.05 0.84 7.02 -51.93 -0.36 0.47 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.17 7.50 -51.93 -0.39 0.78 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 29 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 34 H 0.34 7.04 6.22 -39.29 -0.24 6.79 16 35 H 0.08 2.14 5.31 -51.93 -0.28 1.87 16 36 H 0.03 0.79 7.38 -51.93 -0.38 0.41 16 37 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.06 1.37 8.03 -51.93 -0.42 0.95 16 LS Contribution 315.95 15.07 4.76 4.76 Total: -1.00 -26.77 315.95 -9.14 -35.91 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.48 Total: 7.88 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -1.49 Total: -26.56 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.08 Total: -37.71 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.77 -9.14 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086874774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.200 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds