Wall clock time and date at job start Sun Mar 29 2020 22:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.05711 * 2 1 4 4 C 1.54264 * 110.03438 * 238.58100 * 2 1 3 5 5 C 1.54884 * 104.19646 * 217.10507 * 4 2 1 6 6 C 1.54886 * 102.75077 * 37.94379 * 5 4 2 7 7 C 1.53879 * 110.03219 * 121.41440 * 2 1 3 8 8 H 1.09003 * 110.03444 * 238.61918 * 7 2 1 9 9 N 1.46896 * 110.03351 * 359.97438 * 7 2 1 10 10 C 1.46898 * 111.00600 * 194.78804 * 9 7 2 11 11 C 1.53000 * 109.47596 * 185.12675 * 10 9 7 12 12 C 1.50697 * 115.56083 * 268.56659 * 11 10 9 13 13 H 1.07998 * 119.99738 * 142.21779 * 12 11 10 14 14 C 1.37877 * 119.99862 * 322.21899 * 12 11 10 15 15 N 1.31516 * 120.00365 * 343.81515 * 14 12 11 16 16 Si 1.86805 * 119.99855 * 163.81481 * 14 12 11 17 17 H 1.48506 * 109.46943 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.47417 * 120.00089 * 16 14 12 19 19 H 1.48506 * 109.47092 * 240.00297 * 16 14 12 20 20 C 1.53001 * 117.49728 * 54.25880 * 11 10 9 21 21 C 1.52995 * 60.03448 * 107.49991 * 20 11 10 22 22 H 1.09003 * 109.46900 * 304.92324 * 1 2 3 23 23 H 1.08999 * 109.47202 * 64.92351 * 1 2 3 24 24 H 1.09002 * 109.47334 * 184.92889 * 1 2 3 25 25 H 1.08997 * 109.47485 * 181.41631 * 3 2 1 26 26 H 1.09004 * 109.47105 * 301.41934 * 3 2 1 27 27 H 1.09002 * 109.46977 * 61.41399 * 3 2 1 28 28 H 1.09000 * 110.48170 * 335.78818 * 4 2 1 29 29 H 1.08998 * 110.48278 * 98.29520 * 4 2 1 30 30 H 1.08998 * 110.75599 * 156.25500 * 5 4 2 31 31 H 1.08997 * 110.76000 * 279.44379 * 5 4 2 32 32 H 1.09001 * 110.48869 * 203.37981 * 6 5 4 33 33 H 1.08997 * 110.49195 * 80.73300 * 6 5 4 34 34 H 1.00906 * 111.00082 * 318.74144 * 9 7 2 35 35 H 1.09001 * 109.46976 * 65.12153 * 10 9 7 36 36 H 1.09004 * 109.46536 * 305.13038 * 10 9 7 37 37 H 0.96998 * 119.99937 * 185.01867 * 15 14 12 38 38 H 1.08996 * 117.49788 * 359.97438 * 20 11 10 39 39 H 1.09002 * 117.49417 * 215.00429 * 20 11 10 40 40 H 1.08993 * 117.50034 * 107.47276 * 21 20 11 41 41 H 1.08996 * 117.50056 * 252.47437 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5007 -0.7190 6 6 2.8875 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2338 8 1 2.6860 -0.0951 1.8330 9 7 0.9329 -1.2458 2.0410 10 6 1.3835 -1.6526 3.3787 11 6 0.2141 -2.2764 4.1431 12 6 -0.5983 -1.3223 4.9802 13 1 -1.6698 -1.4398 5.0462 14 6 0.0264 -0.2995 5.6618 15 7 1.3277 -0.3327 5.8493 16 14 -0.9755 1.1336 6.3190 17 1 -2.4071 0.9343 5.9778 18 1 -0.8236 1.2085 7.7942 19 1 -0.4925 2.3974 5.7067 20 6 -0.5259 -3.4381 3.4770 21 6 0.3942 -3.7021 4.6705 22 1 -0.3633 0.5883 0.8426 23 1 -0.3633 0.4355 -0.9308 24 1 -0.3634 -1.0239 0.0883 25 1 3.1443 1.4262 -0.0254 26 1 1.6761 1.9623 -0.8770 27 1 1.7174 1.9471 0.9024 28 1 1.3142 -1.4660 -1.5965 29 1 2.3275 -0.0538 -2.0262 30 1 3.5325 -2.3679 -1.3421 31 1 4.1718 -0.8299 -0.6781 32 1 3.7637 -2.1036 1.3311 33 1 2.2772 -2.8425 0.6573 34 1 0.2006 -0.5542 2.1010 35 1 1.7475 -0.7797 3.9205 36 1 2.1872 -2.3830 3.2848 37 1 1.7573 0.3480 6.3905 38 1 -0.1800 -3.7577 2.4941 39 1 -1.6006 -3.5120 3.6439 40 1 -0.0751 -3.9493 5.6227 41 1 1.3455 -4.1960 4.4730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086874774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:13 Heat of formation + Delta-G solvation = -2.753402 kcal Electronic energy + Delta-G solvation = -18015.931367 eV Core-core repulsion = 15509.161197 eV Total energy + Delta-G solvation = -2506.770171 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43549 -38.40911 -34.37586 -34.21931 -33.08726 -28.58246 -28.26076 -27.54201 -25.80696 -24.38584 -22.81897 -21.48590 -20.69228 -19.26316 -18.04647 -16.77942 -16.59938 -16.34573 -15.84696 -15.55956 -14.86238 -14.50605 -14.31118 -13.86158 -13.83275 -13.57915 -13.09900 -12.89925 -12.77099 -12.67501 -12.46682 -12.26802 -12.09197 -11.99594 -11.83223 -11.65015 -11.37699 -11.30347 -11.29414 -10.94402 -10.88846 -10.52260 -10.02031 -8.98328 -8.08060 -6.16937 1.36110 1.40969 1.51735 2.39336 2.97721 3.42546 3.66855 3.75623 3.83407 4.10412 4.38091 4.44855 4.48413 4.49788 4.60873 4.62327 4.71869 4.81718 4.84085 4.86950 4.99333 5.04005 5.06579 5.09098 5.11313 5.15483 5.20450 5.28331 5.30284 5.34021 5.41228 5.52750 5.54510 5.59607 5.63477 5.65771 6.03157 6.44902 6.55689 6.70363 6.91753 7.41695 8.89390 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.008193 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.440959 B = 3416.877802 C = 3988.933436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.102 4.102 5 C -0.115 4.115 6 C -0.112 4.112 7 C 0.085 3.915 8 H 0.011 0.989 9 N -0.672 5.672 10 C 0.103 3.897 11 C 0.031 3.969 12 C -0.508 4.508 13 H 0.050 0.950 14 C 0.028 3.972 15 N -0.899 5.899 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.279 1.279 20 C -0.167 4.167 21 C -0.210 4.210 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.336 0.664 35 H 0.050 0.950 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 1.689 -13.529 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.067 4.067 3 C -0.193 4.193 4 C -0.140 4.140 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.025 4.025 8 H 0.029 0.971 9 N -0.305 5.305 10 C -0.026 4.026 11 C 0.030 3.970 12 C -0.545 4.545 13 H 0.068 0.932 14 C -0.172 4.172 15 N -0.537 5.537 16 Si 0.772 3.228 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.205 1.205 20 C -0.204 4.204 21 C -0.249 4.249 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.660 1.207 -13.736 14.044 hybrid contribution -0.177 1.341 1.615 2.107 sum 2.483 2.548 -12.121 12.633 Atomic orbital electron populations 1.21751 0.94223 1.02182 1.00823 1.21258 0.96004 0.95057 0.94391 1.21896 1.00946 0.94969 1.01486 1.22375 0.96969 0.98733 0.95889 1.22417 0.97820 1.00284 0.94760 1.22357 0.97906 0.97899 0.96835 1.22257 0.91742 0.94804 0.93694 0.97115 1.60881 1.10761 1.44470 1.14347 1.21329 0.94586 0.99261 0.87461 1.19030 0.95590 0.86205 0.96198 1.20880 0.92972 1.11719 1.28943 0.93175 1.25618 0.95704 0.99881 0.96033 1.70042 1.10378 1.35225 1.38030 0.85691 0.79502 0.79801 0.77809 1.19199 1.20823 1.20472 1.22612 0.96109 1.06357 0.95350 1.22963 0.99781 1.05177 0.96951 0.94348 0.91420 0.91984 0.92413 0.90779 0.94627 0.91313 0.90060 0.90319 0.91243 0.93610 0.91815 0.84432 0.93169 0.95546 0.92964 0.89499 0.91197 0.91800 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 7.09 71.98 0.51 -3.12 16 2 C -0.07 -1.80 0.94 -51.46 -0.05 -1.85 16 3 C -0.14 -3.34 8.15 71.98 0.59 -2.76 16 4 C -0.10 -2.24 5.90 31.67 0.19 -2.05 16 5 C -0.12 -2.61 6.91 31.88 0.22 -2.39 16 6 C -0.11 -3.41 5.91 31.67 0.19 -3.23 16 7 C 0.09 2.92 2.86 45.64 0.13 3.05 16 8 H 0.01 0.42 7.54 -2.39 -0.02 0.40 16 9 N -0.67 -27.07 4.99 -487.83 -2.43 -29.50 16 10 C 0.10 4.93 5.28 86.30 0.46 5.39 16 11 C 0.03 1.54 1.98 -52.90 -0.10 1.44 16 12 C -0.51 -27.98 9.00 25.60 0.23 -27.75 16 13 H 0.05 2.78 7.87 -2.91 -0.02 2.76 16 14 C 0.03 1.52 5.06 84.65 0.43 1.95 16 15 N -0.90 -50.80 11.03 21.45 0.24 -50.56 16 16 Si 0.95 42.98 29.57 68.60 2.03 45.01 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 C -0.17 -7.44 9.71 30.59 0.30 -7.15 16 21 C -0.21 -10.03 9.88 30.62 0.30 -9.73 16 22 H 0.04 1.16 7.02 -2.39 -0.02 1.14 16 23 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 1.86 7.50 -2.39 -0.02 1.84 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.50 7.85 -2.39 -0.02 1.48 16 29 H 0.08 1.45 7.84 -2.39 -0.02 1.44 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 34 H 0.34 14.10 6.22 -89.69 -0.56 13.54 16 35 H 0.05 2.75 5.31 -2.39 -0.01 2.74 16 36 H 0.03 1.27 7.38 -2.38 -0.02 1.25 16 37 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 38 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.07 3.12 8.03 -2.39 -0.02 3.10 16 Total: -1.00 -57.30 315.95 3.63 -53.67 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.42 Total: 29.59 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 3.38 Total: -48.20 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -2.20 Total: -80.06 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -57.30 3.63 -53.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086874774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.912 kcal (2) G-P(sol) polarization free energy of solvation -57.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds