Wall clock time and date at job start Sun Mar 29 2020 22:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99674 * 2 1 4 4 H 1.48500 * 109.46751 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47297 * 299.99782 * 3 2 1 6 6 H 1.48496 * 109.47218 * 60.00699 * 3 2 1 7 7 C 1.37873 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47421 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.47071 * 179.97438 * 11 10 9 13 13 C 1.46663 * 111.00199 * 62.87678 * 12 11 10 14 14 C 1.53306 * 108.31950 * 186.39142 * 13 12 11 15 15 C 1.52778 * 108.40465 * 297.18930 * 14 13 12 16 16 C 1.53149 * 110.46069 * 59.83092 * 15 14 13 17 17 H 1.09000 * 111.60340 * 73.15653 * 16 15 14 18 18 C 1.55103 * 106.83028 * 196.72973 * 16 15 14 19 19 C 1.54001 * 106.36002 * 91.13808 * 18 16 15 20 20 C 1.54565 * 106.59065 * 1.45404 * 19 18 16 21 21 C 1.44796 * 110.99614 * 190.00024 * 12 11 10 22 22 H 1.08997 * 109.24232 * 58.17871 * 21 12 11 23 23 H 0.97000 * 120.00073 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47140 * 60.00241 * 9 7 2 25 25 H 1.09002 * 109.47435 * 300.00196 * 9 7 2 26 26 H 1.09002 * 109.47428 * 59.99179 * 10 9 7 27 27 H 1.09007 * 109.46965 * 300.00346 * 10 9 7 28 28 H 1.09000 * 109.46998 * 59.99843 * 11 10 9 29 29 H 1.09002 * 109.47272 * 299.99548 * 11 10 9 30 30 H 1.09002 * 109.69629 * 306.09843 * 13 12 11 31 31 H 1.09005 * 109.69758 * 66.64225 * 13 12 11 32 32 H 1.09000 * 109.67936 * 56.91874 * 14 13 12 33 33 H 1.08995 * 109.68527 * 177.46253 * 14 13 12 34 34 H 1.08994 * 109.30843 * 180.13259 * 15 14 13 35 35 H 1.08995 * 109.30588 * 299.52879 * 15 14 13 36 36 H 1.08999 * 110.08013 * 210.35970 * 18 16 15 37 37 H 1.08999 * 110.07748 * 331.91806 * 18 16 15 38 38 H 1.08999 * 110.03095 * 120.73761 * 19 18 16 39 39 H 1.08998 * 110.02973 * 242.17047 * 19 18 16 40 40 H 1.08999 * 110.60318 * 264.52996 * 20 19 18 41 41 H 1.09000 * 110.60428 * 141.56964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 3.2511 -6.0981 1.2168 14 6 4.3267 -7.1821 1.0814 15 6 3.6331 -8.5394 0.9776 16 6 2.7081 -8.5762 -0.2424 17 1 3.2729 -8.6419 -1.1724 18 6 1.7463 -9.7761 -0.0408 19 6 0.5082 -9.2219 0.6883 20 6 0.7447 -7.7053 0.8693 21 6 1.7603 -7.3629 -0.2372 22 1 1.2336 -7.3156 -1.1902 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8721 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.8540 -5.0445 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.7247 -5.1238 1.3374 31 1 2.6219 -6.3100 2.0813 32 1 4.9179 -7.0024 0.1834 33 1 4.9751 -7.1674 1.9573 34 1 4.3855 -9.3223 0.8830 35 1 3.0468 -8.7144 1.8797 36 1 1.4574 -10.1906 -1.0066 37 1 2.2267 -10.5426 0.5673 38 1 -0.3856 -9.3915 0.0879 39 1 0.4018 -9.7020 1.6610 40 1 1.1651 -7.4974 1.8533 41 1 -0.1830 -7.1522 0.7227 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087770977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:06 Heat of formation + Delta-G solvation = -31.012429 kcal Electronic energy + Delta-G solvation = -17432.205006 eV Core-core repulsion = 14924.209432 eV Total energy + Delta-G solvation = -2507.995574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.20925 -35.90319 -33.84907 -32.97811 -31.00998 -28.88385 -27.63448 -26.24134 -24.06370 -22.24867 -22.04937 -20.49804 -19.45152 -18.32066 -16.45367 -15.98292 -15.57041 -15.02635 -14.40175 -14.37779 -14.26976 -13.29147 -13.23710 -12.83266 -12.53882 -12.20184 -12.16023 -11.69379 -11.41716 -11.21315 -11.18274 -11.13563 -10.80849 -10.74714 -10.55029 -10.51555 -10.30488 -10.08945 -10.02858 -9.50731 -9.26805 -8.98658 -8.30685 -7.82924 -5.95990 -3.97708 3.33723 3.40988 3.45677 4.13885 4.49656 4.52685 4.65515 4.78228 5.06450 5.14447 5.19034 5.34012 5.39958 5.48943 5.52333 5.59024 5.62466 5.70665 5.79592 5.84570 5.85379 5.94108 5.98349 6.03471 6.08716 6.13329 6.24996 6.30945 6.33590 6.40315 6.51932 6.79125 6.87414 7.20010 7.53325 7.62358 7.73698 7.89023 8.05098 8.48803 9.09886 9.66179 11.15572 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.046594 B = 0.004661 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.797509 B = 6006.218531 C = 6404.414364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.538 5.538 13 C 0.055 3.945 14 C -0.118 4.118 15 C -0.112 4.112 16 C -0.083 4.083 17 H 0.082 0.918 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.160 4.160 21 C 0.095 3.905 22 H 0.078 0.922 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.013 0.987 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.286 -19.152 1.687 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.065 4.065 12 N -0.260 5.260 13 C -0.072 4.072 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.102 4.102 17 H 0.101 0.899 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.199 4.199 21 C -0.015 4.015 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.451 -18.968 1.310 19.527 hybrid contribution -0.278 0.836 0.712 1.133 sum 4.173 -18.132 2.021 18.716 Atomic orbital electron populations 1.69978 1.06062 1.26383 1.51250 1.25027 0.94828 0.99231 0.95446 0.86554 0.80170 0.83877 0.77524 1.19721 1.21037 1.21081 1.21298 0.93079 0.91055 1.50032 0.92648 1.19076 0.94063 0.91453 0.97035 1.21682 0.99151 0.92844 1.00710 1.22212 0.93625 0.90637 1.00075 1.60720 1.25443 1.02600 1.37255 1.22125 0.94789 0.99778 0.90540 1.21587 0.97634 0.94388 1.01934 1.21588 0.98183 0.97345 0.97853 1.21988 0.95747 0.93858 0.98577 0.89936 1.22406 0.95841 0.97471 1.00214 1.22082 0.97888 0.95703 1.00076 1.22924 1.00358 0.95974 1.00675 1.21790 0.92739 0.88980 0.98008 0.90406 0.93141 0.96644 0.96888 0.93442 0.92665 0.91459 0.95347 0.89858 0.95137 0.91081 0.91955 0.92464 0.92365 0.91987 0.91850 0.91983 0.92309 0.91577 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.26 5.01 -26.73 -0.13 -2.39 16 11 C 0.06 1.10 4.55 -3.82 -0.02 1.09 16 12 N -0.54 -8.33 4.49 -227.01 -1.02 -9.35 16 13 C 0.06 0.79 5.11 -3.79 -0.02 0.77 16 14 C -0.12 -1.39 6.11 -26.69 -0.16 -1.55 16 15 C -0.11 -1.19 4.71 -26.77 -0.13 -1.32 16 16 C -0.08 -0.92 3.55 -88.93 -0.32 -1.23 16 17 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 18 C -0.12 -1.15 6.14 -25.10 -0.15 -1.30 16 19 C -0.12 -1.20 6.73 -25.39 -0.17 -1.37 16 20 C -0.16 -1.97 4.91 -25.37 -0.12 -2.10 16 21 C 0.09 1.25 2.48 -67.80 -0.17 1.08 16 22 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.99 6.35 -51.93 -0.33 0.66 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 29 H 0.03 0.52 7.60 -51.93 -0.39 0.12 16 30 H 0.08 1.30 6.10 -51.93 -0.32 0.98 16 31 H 0.03 0.44 6.53 -51.93 -0.34 0.10 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.63 7.16 -51.93 -0.37 0.26 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.54 7.76 -51.93 -0.40 0.14 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.86 5.96 -51.93 -0.31 0.55 16 41 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -29.81 306.52 -10.11 -39.92 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -7.49 Total: -3.85 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -1.94 Total: -21.63 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.28 Total: -36.02 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.81 -10.11 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087770977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.911 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds