Wall clock time and date at job start Sun Mar 29 2020 22:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99674 * 2 1 4 4 H 1.48500 * 109.46751 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47297 * 299.99782 * 3 2 1 6 6 H 1.48496 * 109.47218 * 60.00699 * 3 2 1 7 7 C 1.37873 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47421 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.47071 * 179.97438 * 11 10 9 13 13 C 1.46663 * 111.00199 * 62.87678 * 12 11 10 14 14 C 1.53306 * 108.31950 * 186.39142 * 13 12 11 15 15 C 1.52778 * 108.40465 * 297.18930 * 14 13 12 16 16 C 1.53149 * 110.46069 * 59.83092 * 15 14 13 17 17 H 1.09000 * 111.60340 * 73.15653 * 16 15 14 18 18 C 1.55103 * 106.83028 * 196.72973 * 16 15 14 19 19 C 1.54001 * 106.36002 * 91.13808 * 18 16 15 20 20 C 1.54565 * 106.59065 * 1.45404 * 19 18 16 21 21 C 1.44796 * 110.99614 * 190.00024 * 12 11 10 22 22 H 1.08997 * 109.24232 * 58.17871 * 21 12 11 23 23 H 0.97000 * 120.00073 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47140 * 60.00241 * 9 7 2 25 25 H 1.09002 * 109.47435 * 300.00196 * 9 7 2 26 26 H 1.09002 * 109.47428 * 59.99179 * 10 9 7 27 27 H 1.09007 * 109.46965 * 300.00346 * 10 9 7 28 28 H 1.09000 * 109.46998 * 59.99843 * 11 10 9 29 29 H 1.09002 * 109.47272 * 299.99548 * 11 10 9 30 30 H 1.09002 * 109.69629 * 306.09843 * 13 12 11 31 31 H 1.09005 * 109.69758 * 66.64225 * 13 12 11 32 32 H 1.09000 * 109.67936 * 56.91874 * 14 13 12 33 33 H 1.08995 * 109.68527 * 177.46253 * 14 13 12 34 34 H 1.08994 * 109.30843 * 180.13259 * 15 14 13 35 35 H 1.08995 * 109.30588 * 299.52879 * 15 14 13 36 36 H 1.08999 * 110.08013 * 210.35970 * 18 16 15 37 37 H 1.08999 * 110.07748 * 331.91806 * 18 16 15 38 38 H 1.08999 * 110.03095 * 120.73761 * 19 18 16 39 39 H 1.08998 * 110.02973 * 242.17047 * 19 18 16 40 40 H 1.08999 * 110.60318 * 264.52996 * 20 19 18 41 41 H 1.09000 * 110.60428 * 141.56964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 3.2511 -6.0981 1.2168 14 6 4.3267 -7.1821 1.0814 15 6 3.6331 -8.5394 0.9776 16 6 2.7081 -8.5762 -0.2424 17 1 3.2729 -8.6419 -1.1724 18 6 1.7463 -9.7761 -0.0408 19 6 0.5082 -9.2219 0.6883 20 6 0.7447 -7.7053 0.8693 21 6 1.7603 -7.3629 -0.2372 22 1 1.2336 -7.3156 -1.1902 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8721 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.8540 -5.0445 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.7247 -5.1238 1.3374 31 1 2.6219 -6.3100 2.0813 32 1 4.9179 -7.0024 0.1834 33 1 4.9751 -7.1674 1.9573 34 1 4.3855 -9.3223 0.8830 35 1 3.0468 -8.7144 1.8797 36 1 1.4574 -10.1906 -1.0066 37 1 2.2267 -10.5426 0.5673 38 1 -0.3856 -9.3915 0.0879 39 1 0.4018 -9.7020 1.6610 40 1 1.1651 -7.4974 1.8533 41 1 -0.1830 -7.1522 0.7227 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087770977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:05 Heat of formation + Delta-G solvation = -47.620749 kcal Electronic energy + Delta-G solvation = -17432.925197 eV Core-core repulsion = 14924.209432 eV Total energy + Delta-G solvation = -2508.715765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24687 -37.23054 -35.49054 -34.39709 -32.79961 -29.84301 -29.00292 -27.70009 -25.58567 -23.66071 -23.22865 -21.90025 -20.68634 -19.34878 -18.48816 -17.26377 -16.67931 -16.42287 -16.20324 -15.76620 -15.26025 -14.58666 -14.43258 -14.22795 -13.85490 -13.63097 -13.52606 -13.22853 -12.88269 -12.59740 -12.44028 -12.39010 -12.26328 -12.16926 -12.06127 -11.58365 -11.46270 -11.39224 -11.34180 -11.15236 -10.94172 -10.84440 -10.55628 -9.07995 -8.20685 -6.31874 1.39579 1.40079 1.53818 2.40667 2.95531 3.12417 3.60961 3.76249 3.83994 4.08314 4.16227 4.23624 4.30700 4.35442 4.50618 4.54942 4.61705 4.63602 4.69505 4.72581 4.80888 4.89715 4.95937 5.00881 5.04644 5.09738 5.12439 5.18348 5.21709 5.24910 5.30071 5.39774 5.46115 5.51922 5.61246 5.73773 5.84932 6.17229 6.28753 6.43065 6.84957 7.37502 8.91630 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.046594 B = 0.004661 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.797509 B = 6006.218531 C = 6404.414364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.089 4.089 11 C 0.074 3.926 12 N -0.542 5.542 13 C 0.052 3.948 14 C -0.112 4.112 15 C -0.109 4.109 16 C -0.081 4.081 17 H 0.084 0.916 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.159 4.159 21 C 0.087 3.913 22 H 0.070 0.930 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.011 1.011 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -20.397 1.893 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.053 4.053 12 N -0.265 5.265 13 C -0.075 4.075 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.100 4.100 17 H 0.102 0.898 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.198 4.198 21 C -0.022 4.022 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.875 -20.236 1.516 21.126 hybrid contribution -0.757 1.224 0.648 1.578 sum 5.119 -19.012 2.164 19.808 Atomic orbital electron populations 1.70108 1.07844 1.27721 1.51821 1.25997 0.95780 1.03413 0.94665 0.85377 0.79062 0.78627 0.77854 1.18593 1.20258 1.20248 1.21706 0.93497 0.92352 1.50391 0.92306 1.18969 0.94392 0.93191 0.94603 1.21422 0.97960 0.92784 1.00567 1.21903 0.93511 0.90378 0.99514 1.60679 1.24926 1.02853 1.38022 1.22173 0.95278 1.00104 0.89957 1.21565 0.96871 0.94099 1.02474 1.21584 0.98481 0.97025 0.97534 1.22002 0.95779 0.93152 0.99036 0.89751 1.22377 0.94938 0.96931 1.00967 1.22073 0.98616 0.93684 1.00962 1.22870 0.99281 0.97838 0.99811 1.21916 0.93696 0.88733 0.97882 0.91215 0.92757 0.99089 0.99304 0.93107 0.93075 0.91980 0.96061 0.91543 0.95313 0.91563 0.90307 0.90321 0.92267 0.91017 0.90212 0.91471 0.91251 0.92312 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.44 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.93 5.01 30.59 0.15 -3.78 16 11 C 0.07 2.77 4.55 86.30 0.39 3.16 16 12 N -0.54 -16.79 4.49 -872.14 -3.92 -20.71 16 13 C 0.05 1.48 5.11 86.45 0.44 1.92 16 14 C -0.11 -2.44 6.11 30.62 0.19 -2.26 16 15 C -0.11 -2.01 4.71 30.57 0.14 -1.86 16 16 C -0.08 -1.61 3.55 -9.70 -0.03 -1.64 16 17 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 18 C -0.11 -1.81 6.14 31.65 0.19 -1.62 16 19 C -0.12 -2.08 6.73 31.46 0.21 -1.87 16 20 C -0.16 -3.82 4.91 31.48 0.15 -3.66 16 21 C 0.09 2.24 2.48 45.99 0.11 2.35 16 22 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H 0.05 2.18 6.35 -2.39 -0.02 2.16 16 27 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.06 2.34 8.01 -2.39 -0.02 2.32 16 29 H 0.02 0.81 7.60 -2.39 -0.02 0.79 16 30 H 0.07 2.08 6.10 -2.39 -0.01 2.06 16 31 H 0.03 0.82 6.53 -2.38 -0.02 0.80 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.10 7.16 -2.39 -0.02 1.09 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.05 7.76 -2.39 -0.02 1.03 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.49 5.96 -2.39 -0.01 1.48 16 41 H 0.05 1.35 8.04 -2.39 -0.02 1.33 16 Total: -1.00 -64.38 306.52 2.16 -62.22 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.96 Total: 8.09 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 2.80 Total: -38.95 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -3.63 Total: -78.58 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.38 2.16 -62.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087770977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.604 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds