Wall clock time and date at job start Sun Mar 29 2020 22:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99721 * 2 1 4 4 H 1.48498 * 109.46776 * 270.00265 * 3 2 1 5 5 H 1.48504 * 109.46861 * 29.99867 * 3 2 1 6 6 H 1.48502 * 109.46884 * 150.00076 * 3 2 1 7 7 C 1.37873 * 120.00718 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00339 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99372 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47435 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.47399 * 179.97438 * 11 10 9 13 13 C 1.47734 * 110.11386 * 290.41071 * 12 11 10 14 14 C 1.52585 * 111.20861 * 178.49445 * 13 12 11 15 15 C 1.53842 * 111.30863 * 53.99001 * 14 13 12 16 16 C 1.51984 * 106.89922 * 304.42486 * 15 14 13 17 17 H 1.09000 * 111.32273 * 301.59831 * 16 15 14 18 18 C 1.53331 * 115.47439 * 174.44860 * 16 15 14 19 19 C 1.55293 * 102.98532 * 203.57615 * 18 16 15 20 20 C 1.54900 * 106.36970 * 23.97796 * 19 18 16 21 21 C 1.45277 * 110.99819 * 169.99904 * 12 11 10 22 22 H 1.09002 * 109.60619 * 69.71999 * 21 12 11 23 23 H 0.96998 * 120.00054 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46925 * 60.00457 * 9 7 2 25 25 H 1.08993 * 109.47353 * 299.99966 * 9 7 2 26 26 H 1.09000 * 109.47126 * 59.99974 * 10 9 7 27 27 H 1.09003 * 109.47137 * 300.00339 * 10 9 7 28 28 H 1.09001 * 109.46730 * 60.00316 * 11 10 9 29 29 H 1.08993 * 109.47066 * 300.00121 * 11 10 9 30 30 H 1.09000 * 109.02947 * 58.23258 * 13 12 11 31 31 H 1.09000 * 109.46699 * 299.04714 * 13 12 11 32 32 H 1.08995 * 109.11275 * 293.51743 * 14 13 12 33 33 H 1.09000 * 109.11252 * 174.45566 * 14 13 12 34 34 H 1.09007 * 109.96511 * 185.08050 * 15 14 13 35 35 H 1.08997 * 109.97107 * 63.77190 * 15 14 13 36 36 H 1.08998 * 110.71621 * 85.19874 * 18 16 15 37 37 H 1.09010 * 110.86363 * 322.01593 * 18 16 15 38 38 H 1.09001 * 110.07222 * 264.75627 * 19 18 16 39 39 H 1.08997 * 110.08210 * 143.20870 * 19 18 16 40 40 H 1.09006 * 110.27128 * 244.38663 * 20 19 18 41 41 H 1.08998 * 110.27268 * 122.31978 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4806 -4.9871 0.0020 12 7 2.4353 -6.1036 0.0011 13 6 3.1321 -6.1752 -1.2996 14 6 4.1576 -7.3050 -1.3150 15 6 3.5167 -8.6472 -0.9218 16 6 2.8609 -8.4433 0.4340 17 1 3.5862 -8.1196 1.1804 18 6 2.0433 -9.6306 0.9564 19 6 1.0529 -8.9627 1.9487 20 6 0.9203 -7.4847 1.5047 21 6 1.7586 -7.3673 0.2371 22 1 1.1489 -7.6232 -0.6295 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5574 -0.8881 25 1 0.6249 -2.5563 0.8919 26 1 2.8728 -3.6038 0.8909 27 1 2.8715 -3.6045 -0.8890 28 1 0.8536 -5.0450 -0.8878 29 1 0.8543 -5.0447 0.8922 30 1 3.6422 -5.2294 -1.4820 31 1 2.4040 -6.3450 -2.0928 32 1 4.9565 -7.0713 -0.6113 33 1 4.5792 -7.3907 -2.3165 34 1 4.2829 -9.4193 -0.8523 35 1 2.7661 -8.9315 -1.6593 36 1 2.6857 -10.3432 1.4738 37 1 1.5047 -10.1185 0.1439 38 1 1.4479 -9.0146 2.9633 39 1 0.0827 -9.4569 1.8986 40 1 1.3097 -6.8218 2.2775 41 1 -0.1217 -7.2463 1.2917 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087770979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:08 Heat of formation + Delta-G solvation = -30.787424 kcal Electronic energy + Delta-G solvation = -17332.836109 eV Core-core repulsion = 14824.850292 eV Total energy + Delta-G solvation = -2507.985817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03784 -35.94495 -34.20431 -33.03034 -30.96271 -28.64801 -27.73463 -26.38363 -23.91492 -22.09093 -21.43164 -20.22972 -19.67991 -19.41760 -16.24898 -15.77070 -15.39903 -14.81622 -14.51762 -14.36205 -14.04671 -13.52429 -13.49467 -12.91084 -12.65194 -12.30637 -12.07385 -11.63060 -11.31703 -11.18174 -11.05144 -10.87556 -10.74935 -10.69014 -10.58793 -10.53027 -10.45255 -10.19370 -9.99327 -9.52214 -9.24113 -8.98587 -8.30291 -8.04103 -5.95674 -3.97511 3.34742 3.40703 3.44756 4.14252 4.45171 4.50919 4.65205 4.80990 5.02539 5.22355 5.24381 5.39299 5.40204 5.42645 5.50089 5.54019 5.60382 5.74741 5.81172 5.86963 5.89723 5.91998 5.95831 6.01494 6.15724 6.18692 6.22416 6.26435 6.32942 6.41511 6.50624 6.76550 6.87876 7.18989 7.42073 7.54100 7.73607 7.89110 8.05272 8.48937 9.09813 9.66286 11.15824 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.040246 B = 0.004726 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.558947 B = 5922.854268 C = 6397.345809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.049 3.951 12 N -0.513 5.513 13 C 0.047 3.953 14 C -0.116 4.116 15 C -0.110 4.110 16 C -0.090 4.090 17 H 0.086 0.914 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.117 4.117 21 C 0.072 3.928 22 H 0.035 0.965 23 H 0.260 0.740 24 H 0.012 0.988 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.422 -19.167 0.022 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.078 4.078 12 N -0.237 5.237 13 C -0.081 4.081 14 C -0.154 4.154 15 C -0.147 4.147 16 C -0.109 4.109 17 H 0.104 0.896 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.037 4.037 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.625 -18.948 0.418 19.509 hybrid contribution -0.287 0.916 -0.726 1.204 sum 4.338 -18.032 -0.308 18.549 Atomic orbital electron populations 1.69969 1.06058 1.26490 1.51167 1.25026 0.94830 0.99215 0.95434 0.86609 0.79896 0.83543 0.78050 1.20728 1.21253 1.19850 1.21261 0.93039 0.91066 1.50158 0.92705 1.19077 0.94064 0.91468 0.97009 1.21627 0.99067 0.92736 1.00675 1.22361 0.93912 0.91347 1.00212 1.62886 1.27872 1.02443 1.30502 1.22235 0.96556 0.99433 0.89840 1.21599 0.98493 0.94072 1.01242 1.21494 0.99639 0.97149 0.96451 1.21945 0.97195 0.94684 0.97090 0.89614 1.22201 0.97610 0.97135 0.98673 1.22434 0.99071 0.95186 0.99066 1.21920 0.99345 0.96619 0.97611 1.22094 0.94165 0.90598 0.96892 0.94665 0.93086 0.96919 0.96656 0.92675 0.93582 0.95479 0.91143 0.89968 0.95295 0.91383 0.91917 0.92029 0.92304 0.91779 0.91849 0.91735 0.92083 0.90585 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C 0.05 0.89 4.80 -3.82 -0.02 0.88 16 12 N -0.51 -8.09 4.75 -226.35 -1.08 -9.17 16 13 C 0.05 0.68 5.12 -3.58 -0.02 0.66 16 14 C -0.12 -1.35 5.98 -26.51 -0.16 -1.51 16 15 C -0.11 -1.16 5.70 -26.81 -0.15 -1.31 16 16 C -0.09 -1.03 2.58 -89.75 -0.23 -1.27 16 17 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 18 C -0.12 -1.14 6.44 -25.34 -0.16 -1.31 16 19 C -0.12 -1.21 6.87 -24.51 -0.17 -1.37 16 20 C -0.12 -1.47 5.42 -26.03 -0.14 -1.61 16 21 C 0.07 0.97 1.86 -67.67 -0.13 0.85 16 22 H 0.04 0.50 7.83 -51.93 -0.41 0.09 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.05 0.98 6.56 -51.93 -0.34 0.64 16 28 H 0.03 0.50 8.05 -51.93 -0.42 0.09 16 29 H 0.07 1.29 7.00 -51.93 -0.36 0.93 16 30 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 31 H 0.03 0.42 8.04 -51.93 -0.42 0.00 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 35 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -30.02 312.10 -10.25 -40.27 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.73 Total: -4.38 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.87 Total: -21.71 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.34 Total: -35.90 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.02 -10.25 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087770979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.487 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds