Wall clock time and date at job start Sun Mar 29 2020 22:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99721 * 2 1 4 4 H 1.48498 * 109.46776 * 270.00265 * 3 2 1 5 5 H 1.48504 * 109.46861 * 29.99867 * 3 2 1 6 6 H 1.48502 * 109.46884 * 150.00076 * 3 2 1 7 7 C 1.37873 * 120.00718 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00339 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99372 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47435 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.47399 * 179.97438 * 11 10 9 13 13 C 1.47734 * 110.11386 * 290.41071 * 12 11 10 14 14 C 1.52585 * 111.20861 * 178.49445 * 13 12 11 15 15 C 1.53842 * 111.30863 * 53.99001 * 14 13 12 16 16 C 1.51984 * 106.89922 * 304.42486 * 15 14 13 17 17 H 1.09000 * 111.32273 * 301.59831 * 16 15 14 18 18 C 1.53331 * 115.47439 * 174.44860 * 16 15 14 19 19 C 1.55293 * 102.98532 * 203.57615 * 18 16 15 20 20 C 1.54900 * 106.36970 * 23.97796 * 19 18 16 21 21 C 1.45277 * 110.99819 * 169.99904 * 12 11 10 22 22 H 1.09002 * 109.60619 * 69.71999 * 21 12 11 23 23 H 0.96998 * 120.00054 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46925 * 60.00457 * 9 7 2 25 25 H 1.08993 * 109.47353 * 299.99966 * 9 7 2 26 26 H 1.09000 * 109.47126 * 59.99974 * 10 9 7 27 27 H 1.09003 * 109.47137 * 300.00339 * 10 9 7 28 28 H 1.09001 * 109.46730 * 60.00316 * 11 10 9 29 29 H 1.08993 * 109.47066 * 300.00121 * 11 10 9 30 30 H 1.09000 * 109.02947 * 58.23258 * 13 12 11 31 31 H 1.09000 * 109.46699 * 299.04714 * 13 12 11 32 32 H 1.08995 * 109.11275 * 293.51743 * 14 13 12 33 33 H 1.09000 * 109.11252 * 174.45566 * 14 13 12 34 34 H 1.09007 * 109.96511 * 185.08050 * 15 14 13 35 35 H 1.08997 * 109.97107 * 63.77190 * 15 14 13 36 36 H 1.08998 * 110.71621 * 85.19874 * 18 16 15 37 37 H 1.09010 * 110.86363 * 322.01593 * 18 16 15 38 38 H 1.09001 * 110.07222 * 264.75627 * 19 18 16 39 39 H 1.08997 * 110.08210 * 143.20870 * 19 18 16 40 40 H 1.09006 * 110.27128 * 244.38663 * 20 19 18 41 41 H 1.08998 * 110.27268 * 122.31978 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4806 -4.9871 0.0020 12 7 2.4353 -6.1036 0.0011 13 6 3.1321 -6.1752 -1.2996 14 6 4.1576 -7.3050 -1.3150 15 6 3.5167 -8.6472 -0.9218 16 6 2.8609 -8.4433 0.4340 17 1 3.5862 -8.1196 1.1804 18 6 2.0433 -9.6306 0.9564 19 6 1.0529 -8.9627 1.9487 20 6 0.9203 -7.4847 1.5047 21 6 1.7586 -7.3673 0.2371 22 1 1.1489 -7.6232 -0.6295 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5574 -0.8881 25 1 0.6249 -2.5563 0.8919 26 1 2.8728 -3.6038 0.8909 27 1 2.8715 -3.6045 -0.8890 28 1 0.8536 -5.0450 -0.8878 29 1 0.8543 -5.0447 0.8922 30 1 3.6422 -5.2294 -1.4820 31 1 2.4040 -6.3450 -2.0928 32 1 4.9565 -7.0713 -0.6113 33 1 4.5792 -7.3907 -2.3165 34 1 4.2829 -9.4193 -0.8523 35 1 2.7661 -8.9315 -1.6593 36 1 2.6857 -10.3432 1.4738 37 1 1.5047 -10.1185 0.1439 38 1 1.4479 -9.0146 2.9633 39 1 0.0827 -9.4569 1.8986 40 1 1.3097 -6.8218 2.2775 41 1 -0.1217 -7.2463 1.2917 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087770979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:08 Heat of formation + Delta-G solvation = -47.664640 kcal Electronic energy + Delta-G solvation = -17333.567960 eV Core-core repulsion = 14824.850292 eV Total energy + Delta-G solvation = -2508.717668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09640 -37.24036 -35.69429 -34.66244 -32.76985 -29.61842 -29.00510 -27.94944 -25.49891 -23.56208 -22.54937 -21.64567 -20.77853 -20.59180 -18.46137 -16.94664 -16.57405 -16.32774 -16.10245 -15.65279 -15.13077 -14.89805 -14.45897 -14.34967 -14.04747 -13.63113 -13.61498 -13.16949 -12.89481 -12.68391 -12.51390 -12.39616 -12.04755 -11.97161 -11.74663 -11.65338 -11.48882 -11.45962 -11.32766 -11.27541 -11.09800 -10.74566 -10.55981 -9.32816 -8.21033 -6.32480 1.39100 1.40941 1.52391 2.40294 2.95503 3.11871 3.49841 3.73504 3.89216 4.07395 4.12890 4.24115 4.34422 4.35565 4.46313 4.51677 4.57198 4.60518 4.69123 4.70435 4.83588 4.91152 4.97198 5.01236 5.04856 5.09159 5.13764 5.19998 5.20723 5.25113 5.28769 5.36869 5.42364 5.51142 5.61485 5.71820 5.83879 6.09776 6.22994 6.31276 6.83904 7.36848 8.91050 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.040246 B = 0.004726 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.558947 B = 5922.854268 C = 6397.345809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.086 4.086 11 C 0.061 3.939 12 N -0.519 5.519 13 C 0.043 3.957 14 C -0.112 4.112 15 C -0.106 4.106 16 C -0.084 4.084 17 H 0.075 0.925 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.121 4.121 21 C 0.064 3.936 22 H 0.030 0.970 23 H 0.264 0.736 24 H -0.012 1.012 25 H -0.009 1.009 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.019 0.981 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 -20.431 -0.058 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.124 4.124 11 C -0.066 4.066 12 N -0.242 5.242 13 C -0.084 4.084 14 C -0.149 4.149 15 C -0.143 4.143 16 C -0.103 4.103 17 H 0.094 0.906 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.045 4.045 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.007 0.993 25 H 0.009 0.991 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.027 -20.234 0.335 21.115 hybrid contribution -0.760 1.310 -0.704 1.670 sum 5.267 -18.924 -0.369 19.647 Atomic orbital electron populations 1.70102 1.07845 1.27804 1.51704 1.26001 0.95786 1.03416 0.94618 0.85426 0.78658 0.78273 0.78565 1.19652 1.20564 1.18757 1.21672 0.93479 0.92353 1.50583 0.92330 1.18968 0.94380 0.93197 0.94582 1.21363 0.97889 0.92707 1.00474 1.22070 0.93823 0.91104 0.99643 1.62873 1.27286 1.02652 1.31437 1.22313 0.96979 1.00122 0.89017 1.21580 0.97431 0.93578 1.02358 1.21493 1.00191 0.96887 0.95744 1.21938 0.96352 0.94492 0.97549 0.90623 1.22191 0.97363 0.96566 0.98795 1.22423 1.00105 0.93191 0.99573 1.21957 0.98729 0.98414 0.96776 1.22245 0.95235 0.89963 0.97038 0.95166 0.92733 0.99336 0.99087 0.93121 0.93301 0.96276 0.91584 0.91515 0.95585 0.91650 0.90111 0.89803 0.91942 0.89943 0.91013 0.91023 0.90867 0.92203 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.25 13.29 21.45 0.28 -57.97 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.09 -3.84 5.15 30.59 0.16 -3.68 16 11 C 0.06 2.32 4.80 86.30 0.41 2.74 16 12 N -0.52 -16.40 4.75 -870.03 -4.13 -20.54 16 13 C 0.04 1.23 5.12 86.01 0.44 1.67 16 14 C -0.11 -2.40 5.98 30.74 0.18 -2.21 16 15 C -0.11 -1.94 5.70 30.54 0.17 -1.77 16 16 C -0.08 -1.76 2.58 -10.23 -0.03 -1.79 16 17 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 18 C -0.11 -1.82 6.44 31.49 0.20 -1.62 16 19 C -0.11 -2.09 6.87 32.03 0.22 -1.87 16 20 C -0.12 -2.99 5.42 31.05 0.17 -2.82 16 21 C 0.06 1.69 1.86 45.82 0.09 1.78 16 22 H 0.03 0.84 7.83 -2.39 -0.02 0.82 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 26 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 27 H 0.05 2.12 6.56 -2.39 -0.02 2.11 16 28 H 0.02 0.74 8.05 -2.39 -0.02 0.72 16 29 H 0.07 2.52 7.00 -2.39 -0.02 2.51 16 30 H 0.07 2.07 6.43 -2.39 -0.02 2.06 16 31 H 0.03 0.75 8.04 -2.39 -0.02 0.73 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.13 8.04 -2.39 -0.02 1.11 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.66 8.06 -2.38 -0.02 1.64 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -65.01 312.10 1.99 -63.01 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.95 Total: 7.63 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 2.86 Total: -39.42 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -3.85 Total: -78.50 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -65.01 1.99 -63.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087770979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.350 kcal (2) G-P(sol) polarization free energy of solvation -65.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds