Wall clock time and date at job start Sun Mar 29 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47053 * 2 1 4 4 H 1.08999 * 109.47069 * 303.30560 * 3 2 1 5 5 C 1.50698 * 109.47096 * 183.30619 * 3 2 1 6 6 H 1.08000 * 120.00413 * 268.09733 * 5 3 2 7 7 C 1.37874 * 119.99985 * 88.09551 * 5 3 2 8 8 N 1.31516 * 120.00230 * 353.36868 * 7 5 3 9 9 Si 1.86801 * 120.00177 * 173.36847 * 7 5 3 10 10 H 1.48500 * 109.47205 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47400 * 240.00156 * 9 7 5 12 12 H 1.48501 * 109.47100 * 120.00172 * 9 7 5 13 13 N 1.46902 * 109.46909 * 63.30810 * 3 2 1 14 14 C 1.47662 * 110.99783 * 59.00702 * 13 3 2 15 15 C 1.52585 * 111.72244 * 181.51150 * 14 13 3 16 16 C 1.53870 * 111.27657 * 306.36214 * 15 14 13 17 17 C 1.51818 * 106.89978 * 55.23726 * 16 15 14 18 18 H 1.09006 * 110.25031 * 57.04440 * 17 16 15 19 19 C 1.52561 * 116.25986 * 182.94936 * 17 16 15 20 20 C 1.54886 * 105.37016 * 145.87891 * 19 17 16 21 21 C 1.55304 * 106.37649 * 356.54514 * 20 19 17 22 22 C 1.45463 * 110.99840 * 179.97438 * 13 3 2 23 23 H 1.08995 * 110.16829 * 291.67559 * 22 13 3 24 24 H 1.08999 * 109.46722 * 299.99739 * 1 2 3 25 25 H 1.08994 * 109.47293 * 60.00180 * 1 2 3 26 26 H 1.09007 * 109.46702 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47142 * 240.00108 * 2 1 3 28 28 H 1.08998 * 109.47735 * 120.00011 * 2 1 3 29 29 H 0.96999 * 119.99387 * 354.51962 * 8 7 5 30 30 H 1.08993 * 109.03182 * 302.08706 * 14 13 3 31 31 H 1.08994 * 109.03410 * 60.93432 * 14 13 3 32 32 H 1.09008 * 109.11661 * 185.90125 * 15 14 13 33 33 H 1.08998 * 109.12140 * 66.83265 * 15 14 13 34 34 H 1.09002 * 109.96683 * 295.88987 * 16 15 14 35 35 H 1.09002 * 109.96911 * 174.58454 * 16 15 14 36 36 H 1.09004 * 110.26841 * 26.89790 * 19 17 16 37 37 H 1.09008 * 110.33838 * 264.88769 * 19 17 16 38 38 H 1.09005 * 110.07633 * 237.31476 * 20 19 17 39 39 H 1.09004 * 110.12705 * 115.80101 * 20 19 17 40 40 H 1.09001 * 110.71665 * 217.72718 * 21 20 19 41 41 H 1.08994 * 110.86753 * 94.53077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6291 1.9732 -0.8589 5 6 3.5447 1.4434 -0.0819 6 1 4.1348 1.4567 0.8225 7 6 4.1682 1.4270 -1.3116 8 7 3.4566 1.2792 -2.4077 9 14 6.0235 1.6147 -1.4207 10 1 6.5871 1.7642 -0.0550 11 1 6.3528 2.8175 -2.2270 12 1 6.6057 0.4110 -2.0668 13 7 1.6166 2.1116 1.2374 14 6 2.1363 1.4050 2.4253 15 6 1.6754 2.0651 3.7215 16 6 2.0201 3.5646 3.7378 17 6 1.4054 4.1723 2.4897 18 1 0.3317 3.9857 2.4688 19 6 1.6794 5.6547 2.2556 20 6 1.7742 5.8168 0.7181 21 6 1.6374 4.3909 0.1182 22 6 2.0854 3.4881 1.2724 23 1 3.1705 3.5132 1.3711 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.5048 1.1023 -2.3478 30 1 1.7848 0.3735 2.4074 31 1 3.2257 1.4084 2.3927 32 1 2.1649 1.5770 4.5644 33 1 0.5963 1.9457 3.8190 34 1 3.1019 3.6980 3.7228 35 1 1.5985 4.0339 4.6267 36 1 2.6201 5.9436 2.7245 37 1 0.8612 6.2580 2.6490 38 1 2.7384 6.2463 0.4459 39 1 0.9663 6.4536 0.3576 40 1 2.2946 4.2702 -0.7429 41 1 0.6032 4.1825 -0.1556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087770994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:19 Heat of formation + Delta-G solvation = -25.568392 kcal Electronic energy + Delta-G solvation = -18634.825417 eV Core-core repulsion = 16127.065915 eV Total energy + Delta-G solvation = -2507.759503 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.50788 -35.94036 -33.90456 -31.94272 -31.06232 -28.12054 -27.11681 -25.91434 -23.55825 -22.47681 -21.02640 -20.05475 -19.17118 -18.83794 -16.59588 -15.29840 -14.88142 -14.36582 -13.85785 -13.72202 -13.61288 -13.25600 -12.86482 -12.80350 -12.33089 -12.15563 -11.66961 -11.44328 -10.98111 -10.83514 -10.72768 -10.57697 -10.41181 -10.31560 -10.21095 -10.10873 -10.05837 -9.97283 -9.87749 -9.38864 -9.19282 -8.89855 -8.33572 -6.99975 -6.32739 -4.08484 3.41702 3.43632 3.57064 4.51255 4.85847 5.04147 5.18439 5.29487 5.40404 5.48030 5.66588 5.71863 5.92489 6.01547 6.07416 6.09045 6.13961 6.16878 6.20554 6.29254 6.32385 6.36337 6.41369 6.42423 6.53543 6.58672 6.75247 6.78335 6.83754 6.86148 6.88958 6.97021 7.08225 7.17125 7.38394 7.44035 8.03459 8.24302 8.35328 8.59736 8.84800 9.64949 11.01784 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.010691 C = 0.008993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.601977 B = 2618.421369 C = 3112.828988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.192 3.808 4 H 0.046 0.954 5 C -0.617 4.617 6 H 0.050 0.950 7 C 0.028 3.972 8 N -0.909 5.909 9 Si 1.062 2.938 10 H -0.291 1.291 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.512 5.512 14 C 0.052 3.948 15 C -0.114 4.114 16 C -0.105 4.105 17 C -0.098 4.098 18 H 0.073 0.927 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.108 4.108 22 C 0.096 3.904 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.272 0.728 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 4.801 8.899 10.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C 0.086 3.914 4 H 0.063 0.937 5 C -0.656 4.656 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.545 5.545 9 Si 0.891 3.109 10 H -0.217 1.217 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.235 5.235 14 C -0.076 4.076 15 C -0.152 4.152 16 C -0.143 4.143 17 C -0.117 4.117 18 H 0.092 0.908 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.146 4.146 22 C -0.013 4.013 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.153 4.910 7.828 9.763 hybrid contribution -0.235 -0.269 0.992 1.054 sum -3.387 4.641 8.820 10.527 Atomic orbital electron populations 1.21740 0.98081 0.98802 1.01275 1.21741 0.93117 0.99811 1.00289 1.19480 0.93756 0.90146 0.88066 0.93656 1.22492 0.92404 1.55908 0.94834 0.93193 1.25629 1.06180 0.93648 0.92281 1.70721 1.09520 1.44583 1.29710 0.83659 0.75237 0.76947 0.75068 1.21739 1.21299 1.21537 1.63002 1.56537 1.01115 1.02883 1.21994 0.98274 0.97562 0.89807 1.21617 1.00951 0.95213 0.97402 1.21419 1.00113 0.95654 0.97123 1.21753 1.00508 0.93720 0.95711 0.90837 1.21886 1.00676 0.96385 0.96219 1.22439 1.00911 0.97572 0.94957 1.22054 1.01243 0.93084 0.98240 1.21934 0.97098 0.89137 0.93152 0.93270 0.92597 0.94039 0.95292 0.92973 0.93719 0.91660 0.91690 0.94478 0.92816 0.92349 0.92428 0.92914 0.92372 0.92574 0.92279 0.92539 0.91303 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.79 37.16 0.36 -2.37 16 2 C -0.11 -2.50 5.00 -26.73 -0.13 -2.63 16 3 C 0.19 4.60 1.25 -68.86 -0.09 4.51 16 4 H 0.05 1.21 6.27 -51.93 -0.33 0.88 16 5 C -0.62 -16.40 6.75 -34.44 -0.23 -16.63 16 6 H 0.05 1.37 6.04 -52.49 -0.32 1.05 16 7 C 0.03 0.78 5.45 -17.82 -0.10 0.68 16 8 N -0.91 -26.55 13.55 55.43 0.75 -25.80 16 9 Si 1.06 25.07 29.91 -169.99 -5.08 19.99 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.51 -10.69 4.13 -219.22 -0.91 -11.60 16 14 C 0.05 1.01 4.74 -3.62 -0.02 0.99 16 15 C -0.11 -1.80 5.99 -26.49 -0.16 -1.96 16 16 C -0.11 -1.60 5.70 -26.88 -0.15 -1.75 16 17 C -0.10 -1.60 2.43 -90.22 -0.22 -1.82 16 18 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 19 C -0.11 -1.64 6.50 -25.96 -0.17 -1.81 16 20 C -0.12 -1.87 6.87 -24.51 -0.17 -2.04 16 21 C -0.11 -2.07 5.60 -25.39 -0.14 -2.22 16 22 C 0.10 1.91 1.42 -67.14 -0.10 1.82 16 23 H 0.05 1.12 7.24 -51.93 -0.38 0.74 16 24 H 0.05 1.06 7.70 -51.93 -0.40 0.66 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.05 1.28 7.71 -51.93 -0.40 0.87 16 28 H 0.04 0.98 6.16 -51.93 -0.32 0.67 16 29 H 0.27 7.92 6.39 -40.82 -0.26 7.66 16 30 H 0.06 1.27 6.08 -51.93 -0.32 0.95 16 31 H 0.04 0.80 6.18 -51.93 -0.32 0.48 16 32 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 301.89 15.07 4.55 4.55 Total: -1.00 -27.49 301.89 -9.32 -36.81 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.32 Total: 1.27 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -1.31 Total: -25.23 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.15 Total: -37.39 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.49 -9.32 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087770994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.240 kcal (2) G-P(sol) polarization free energy of solvation -27.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds