Wall clock time and date at job start Sun Mar 29 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47053 * 2 1 4 4 H 1.08999 * 109.47069 * 303.30560 * 3 2 1 5 5 C 1.50698 * 109.47096 * 183.30619 * 3 2 1 6 6 H 1.08000 * 120.00413 * 268.09733 * 5 3 2 7 7 C 1.37874 * 119.99985 * 88.09551 * 5 3 2 8 8 N 1.31516 * 120.00230 * 353.36868 * 7 5 3 9 9 Si 1.86801 * 120.00177 * 173.36847 * 7 5 3 10 10 H 1.48500 * 109.47205 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47400 * 240.00156 * 9 7 5 12 12 H 1.48501 * 109.47100 * 120.00172 * 9 7 5 13 13 N 1.46902 * 109.46909 * 63.30810 * 3 2 1 14 14 C 1.47662 * 110.99783 * 59.00702 * 13 3 2 15 15 C 1.52585 * 111.72244 * 181.51150 * 14 13 3 16 16 C 1.53870 * 111.27657 * 306.36214 * 15 14 13 17 17 C 1.51818 * 106.89978 * 55.23726 * 16 15 14 18 18 H 1.09006 * 110.25031 * 57.04440 * 17 16 15 19 19 C 1.52561 * 116.25986 * 182.94936 * 17 16 15 20 20 C 1.54886 * 105.37016 * 145.87891 * 19 17 16 21 21 C 1.55304 * 106.37649 * 356.54514 * 20 19 17 22 22 C 1.45463 * 110.99840 * 179.97438 * 13 3 2 23 23 H 1.08995 * 110.16829 * 291.67559 * 22 13 3 24 24 H 1.08999 * 109.46722 * 299.99739 * 1 2 3 25 25 H 1.08994 * 109.47293 * 60.00180 * 1 2 3 26 26 H 1.09007 * 109.46702 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47142 * 240.00108 * 2 1 3 28 28 H 1.08998 * 109.47735 * 120.00011 * 2 1 3 29 29 H 0.96999 * 119.99387 * 354.51962 * 8 7 5 30 30 H 1.08993 * 109.03182 * 302.08706 * 14 13 3 31 31 H 1.08994 * 109.03410 * 60.93432 * 14 13 3 32 32 H 1.09008 * 109.11661 * 185.90125 * 15 14 13 33 33 H 1.08998 * 109.12140 * 66.83265 * 15 14 13 34 34 H 1.09002 * 109.96683 * 295.88987 * 16 15 14 35 35 H 1.09002 * 109.96911 * 174.58454 * 16 15 14 36 36 H 1.09004 * 110.26841 * 26.89790 * 19 17 16 37 37 H 1.09008 * 110.33838 * 264.88769 * 19 17 16 38 38 H 1.09005 * 110.07633 * 237.31476 * 20 19 17 39 39 H 1.09004 * 110.12705 * 115.80101 * 20 19 17 40 40 H 1.09001 * 110.71665 * 217.72718 * 21 20 19 41 41 H 1.08994 * 110.86753 * 94.53077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6291 1.9732 -0.8589 5 6 3.5447 1.4434 -0.0819 6 1 4.1348 1.4567 0.8225 7 6 4.1682 1.4270 -1.3116 8 7 3.4566 1.2792 -2.4077 9 14 6.0235 1.6147 -1.4207 10 1 6.5871 1.7642 -0.0550 11 1 6.3528 2.8175 -2.2270 12 1 6.6057 0.4110 -2.0668 13 7 1.6166 2.1116 1.2374 14 6 2.1363 1.4050 2.4253 15 6 1.6754 2.0651 3.7215 16 6 2.0201 3.5646 3.7378 17 6 1.4054 4.1723 2.4897 18 1 0.3317 3.9857 2.4688 19 6 1.6794 5.6547 2.2556 20 6 1.7742 5.8168 0.7181 21 6 1.6374 4.3909 0.1182 22 6 2.0854 3.4881 1.2724 23 1 3.1705 3.5132 1.3711 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.5048 1.1023 -2.3478 30 1 1.7848 0.3735 2.4074 31 1 3.2257 1.4084 2.3927 32 1 2.1649 1.5770 4.5644 33 1 0.5963 1.9457 3.8190 34 1 3.1019 3.6980 3.7228 35 1 1.5985 4.0339 4.6267 36 1 2.6201 5.9436 2.7245 37 1 0.8612 6.2580 2.6490 38 1 2.7384 6.2463 0.4459 39 1 0.9663 6.4536 0.3576 40 1 2.2946 4.2702 -0.7429 41 1 0.6032 4.1825 -0.1556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087770994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:19 Heat of formation + Delta-G solvation = -40.489380 kcal Electronic energy + Delta-G solvation = -18635.472440 eV Core-core repulsion = 16127.065915 eV Total energy + Delta-G solvation = -2508.406525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03604 -37.62009 -35.43557 -33.87596 -32.69737 -29.53068 -28.63127 -27.72220 -25.43752 -24.09571 -22.44293 -21.65229 -20.72164 -20.44850 -18.53682 -16.98996 -16.34570 -15.91727 -15.74617 -15.42581 -15.03857 -14.79235 -14.55945 -14.22424 -13.94530 -13.69147 -13.19952 -13.01830 -12.78764 -12.53537 -12.43769 -12.15974 -12.05611 -11.92576 -11.73888 -11.68501 -11.61739 -11.52385 -11.19557 -11.08398 -10.93253 -10.63829 -10.43565 -8.88412 -8.50297 -6.29802 1.44995 1.52429 1.67748 2.51902 3.16096 3.37728 3.63475 3.85966 4.00563 4.16893 4.29969 4.37507 4.40941 4.49916 4.58176 4.63470 4.64314 4.70062 4.76760 4.79563 4.91833 5.00187 5.02276 5.07386 5.12611 5.15230 5.17223 5.22809 5.31842 5.35156 5.36501 5.40039 5.47454 5.52168 5.60103 5.69271 6.03512 6.14329 6.59786 6.63567 6.65851 7.50393 8.79120 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.010691 C = 0.008993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.601977 B = 2618.421369 C = 3112.828988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 C 0.197 3.803 4 H 0.013 0.987 5 C -0.614 4.614 6 H 0.037 0.963 7 C -0.021 4.021 8 N -0.935 5.935 9 Si 1.102 2.898 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.507 5.507 14 C 0.053 3.947 15 C -0.108 4.108 16 C -0.103 4.103 17 C -0.086 4.086 18 H 0.075 0.925 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.109 4.109 22 C 0.088 3.912 23 H 0.014 0.986 24 H 0.063 0.937 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.023 0.977 28 H 0.047 0.953 29 H 0.260 0.740 30 H 0.062 0.938 31 H 0.007 0.993 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.025 0.975 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 5.870 11.309 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C 0.090 3.910 4 H 0.031 0.969 5 C -0.653 4.653 6 H 0.056 0.944 7 C -0.221 4.221 8 N -0.573 5.573 9 Si 0.926 3.074 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.229 5.229 14 C -0.075 4.075 15 C -0.146 4.146 16 C -0.140 4.140 17 C -0.105 4.105 18 H 0.093 0.907 19 C -0.145 4.145 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.022 4.022 23 H 0.032 0.968 24 H 0.082 0.918 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.025 0.975 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.044 0.956 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.965 5.981 10.260 12.520 hybrid contribution -0.002 -0.623 0.251 0.672 sum -3.966 5.358 10.511 12.446 Atomic orbital electron populations 1.21597 0.95219 1.00464 1.01300 1.21592 0.95630 0.98265 0.98928 1.19266 0.92111 0.90950 0.88700 0.96915 1.22709 0.94025 1.54466 0.94097 0.94435 1.26831 1.09602 0.93342 0.92295 1.70826 1.09043 1.46988 1.30397 0.83118 0.71226 0.77288 0.75740 1.20472 1.20710 1.20738 1.63012 1.56071 1.01701 1.02165 1.22063 0.96397 0.97974 0.91105 1.21584 1.01803 0.95708 0.95469 1.21430 0.99714 0.95110 0.97776 1.21726 1.00039 0.94578 0.94144 0.90657 1.21885 1.02372 0.95246 0.94950 1.22418 1.01851 0.94994 0.96000 1.22014 0.99755 0.96030 0.96898 1.22019 0.95394 0.88991 0.95782 0.96835 0.91803 0.94662 0.92795 0.95813 0.93460 0.92932 0.91990 0.97497 0.90629 0.91091 0.93320 0.89453 0.91505 0.89553 0.92326 0.90304 0.95557 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 9.79 71.98 0.70 -4.19 16 2 C -0.11 -4.87 5.00 30.60 0.15 -4.71 16 3 C 0.20 9.84 1.25 44.17 0.06 9.90 16 4 H 0.01 0.73 6.27 -2.39 -0.01 0.71 16 5 C -0.61 -34.02 6.75 25.60 0.17 -33.85 16 6 H 0.04 2.14 6.04 -2.91 -0.02 2.12 16 7 C -0.02 -1.20 5.45 84.65 0.46 -0.74 16 8 N -0.93 -56.97 13.55 21.45 0.29 -56.68 16 9 Si 1.10 51.74 29.91 68.60 2.05 53.79 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.51 -21.40 4.13 -847.47 -3.50 -24.90 16 14 C 0.05 2.03 4.74 86.02 0.41 2.44 16 15 C -0.11 -3.11 5.99 30.75 0.18 -2.92 16 16 C -0.10 -2.78 5.70 30.50 0.17 -2.60 16 17 C -0.09 -2.59 2.43 -10.53 -0.03 -2.62 16 18 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 19 C -0.11 -2.72 6.50 31.09 0.20 -2.52 16 20 C -0.11 -3.37 6.87 32.03 0.22 -3.15 16 21 C -0.11 -4.27 5.60 31.46 0.18 -4.10 16 22 C 0.09 3.51 1.42 46.06 0.07 3.58 16 23 H 0.01 0.64 7.24 -2.39 -0.02 0.62 16 24 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.02 1.19 7.71 -2.38 -0.02 1.18 16 28 H 0.05 2.11 6.16 -2.39 -0.01 2.10 16 29 H 0.26 16.04 6.39 -92.71 -0.59 15.44 16 30 H 0.06 2.38 6.08 -2.39 -0.01 2.37 16 31 H 0.01 0.30 6.18 -2.39 -0.01 0.28 16 32 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.62 8.06 -2.38 -0.02 1.60 16 37 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -62.33 301.89 2.94 -59.39 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 1.15 Total: 13.90 kcal Atomic # 6 Polarization: -48.45 SS G_CDS: 2.95 Total: -45.50 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -3.21 Total: -81.58 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.05 Total: 53.79 kcal Total: -62.33 2.94 -59.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087770994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.902 kcal (2) G-P(sol) polarization free energy of solvation -62.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds