Wall clock time and date at job start Sun Mar 29 2020 21:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47160 * 269.99862 * 3 2 1 5 5 H 1.48503 * 109.47137 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47038 * 149.99654 * 3 2 1 7 7 C 1.37880 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99689 * 157.52832 * 7 2 1 9 9 C 1.50696 * 119.99939 * 337.53584 * 7 2 1 10 10 C 1.52994 * 115.54989 * 324.90371 * 9 7 2 11 11 N 1.46900 * 109.47737 * 280.81151 * 10 9 7 12 12 C 1.46977 * 111.00498 * 162.99644 * 11 10 9 13 13 C 1.53212 * 109.33416 * 237.39515 * 12 11 10 14 14 C 1.52829 * 109.36821 * 284.47113 * 13 12 11 15 15 C 1.52883 * 109.60516 * 76.04924 * 14 13 12 16 16 C 1.53096 * 109.38185 * 247.43191 * 15 14 13 17 17 C 1.53288 * 108.78188 * 43.63908 * 16 15 14 18 18 C 1.46788 * 110.99634 * 287.22937 * 11 10 9 19 19 C 1.53001 * 117.52085 * 110.61337 * 9 7 2 20 20 C 1.53006 * 60.00190 * 107.47575 * 19 9 7 21 21 H 0.97005 * 119.99841 * 5.50042 * 1 2 3 22 22 H 1.09004 * 109.47213 * 160.81463 * 10 9 7 23 23 H 1.08999 * 109.47199 * 40.81390 * 10 9 7 24 24 H 1.08998 * 109.49645 * 117.43452 * 12 11 10 25 25 H 1.09001 * 109.49251 * 357.35194 * 12 11 10 26 26 H 1.08992 * 109.49392 * 164.49769 * 13 12 11 27 27 H 1.09002 * 109.48584 * 44.43222 * 13 12 11 28 28 H 1.09003 * 109.44386 * 316.01716 * 14 13 12 29 29 H 1.08998 * 109.45252 * 196.09486 * 14 13 12 30 30 H 1.09001 * 109.48819 * 7.41194 * 15 14 13 31 31 H 1.08998 * 109.48461 * 127.45801 * 15 14 13 32 32 H 1.08998 * 109.57990 * 163.44770 * 16 15 14 33 33 H 1.08998 * 109.58203 * 283.85185 * 16 15 14 34 34 H 1.09005 * 109.48631 * 314.59186 * 17 16 15 35 35 H 1.09002 * 109.47213 * 194.56900 * 17 16 15 36 36 H 1.08995 * 109.37490 * 311.69418 * 18 11 10 37 37 H 1.09000 * 109.37842 * 71.34564 * 18 11 10 38 38 H 1.08999 * 117.49731 * 214.96518 * 19 9 7 39 39 H 1.09001 * 117.49516 * 359.97438 * 19 9 7 40 40 H 1.08999 * 117.49726 * 252.51571 * 20 19 9 41 41 H 1.08998 * 117.51913 * 107.48114 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0230 -1.2298 -0.3570 9 6 1.3368 -2.4494 0.4998 10 6 0.3661 -2.2609 1.6672 11 7 1.1240 -2.1383 2.9196 12 6 0.2910 -1.5637 3.9855 13 6 0.9594 -0.2942 4.5230 14 6 2.1382 -0.6810 5.4154 15 6 3.3159 -1.1231 4.5465 16 6 3.5664 -2.6192 4.7533 17 6 2.2188 -3.3498 4.7537 18 6 1.6852 -3.4331 3.3236 19 6 1.0012 -3.5294 -0.5307 20 6 2.1485 -3.7457 0.4582 21 1 -0.4850 0.8362 -0.0805 22 1 -0.3000 -3.1215 1.7285 23 1 -0.2220 -1.3569 1.5085 24 1 0.1831 -2.2878 4.7930 25 1 -0.6920 -1.3157 3.5851 26 1 0.2368 0.2794 5.1034 27 1 1.3175 0.3093 3.6889 28 1 1.8434 -1.5002 6.0712 29 1 2.4342 0.1775 6.0182 30 1 3.0852 -0.9345 3.4980 31 1 4.2070 -0.5628 4.8294 32 1 4.1889 -3.0007 3.9440 33 1 4.0678 -2.7771 5.7081 34 1 1.5092 -2.8035 5.3752 35 1 2.3511 -4.3560 5.1515 36 1 0.9085 -4.1959 3.2714 37 1 2.4987 -3.7009 2.6493 38 1 0.0888 -4.1056 -0.3769 39 1 1.2631 -3.3319 -1.5702 40 1 3.1653 -3.6906 0.0694 41 1 1.9912 -4.4641 1.2628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:42 Heat of formation + Delta-G solvation = 37.657806 kcal Electronic energy + Delta-G solvation = -18670.043398 eV Core-core repulsion = 16165.025589 eV Total energy + Delta-G solvation = -2505.017809 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.97224 -36.47717 -33.56446 -32.45067 -32.00449 -28.09030 -25.73379 -25.50586 -24.19889 -21.89171 -20.82124 -20.55720 -18.94614 -18.51766 -16.35711 -15.30028 -15.05824 -14.50065 -14.18163 -13.76130 -13.67635 -13.15064 -13.03923 -12.79595 -12.24172 -11.70580 -11.27924 -11.12454 -11.05075 -10.97397 -10.83700 -10.58366 -10.40344 -10.36979 -10.10641 -10.08737 -10.00310 -9.70567 -9.60956 -9.10170 -8.91977 -8.53547 -7.88317 -7.14510 -6.00074 -3.90382 3.33033 3.41920 3.49645 4.46860 4.71680 5.12051 5.23452 5.36467 5.38131 5.55587 5.61702 5.68448 5.77661 6.00649 6.02419 6.05082 6.19845 6.22593 6.26724 6.34048 6.35695 6.46539 6.51907 6.58744 6.64301 6.70493 6.75390 6.76327 6.78909 6.85871 6.98956 7.04739 7.20554 7.27243 7.42687 7.68656 8.04678 8.19721 8.24803 8.60448 8.99900 9.63375 11.04329 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.011705 C = 0.009207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.842991 B = 2391.563551 C = 3040.476722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.081 3.919 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.475 4.475 8 H 0.057 0.943 9 C 0.074 3.926 10 C 0.085 3.915 11 N -0.510 5.510 12 C 0.050 3.950 13 C -0.111 4.111 14 C -0.117 4.117 15 C -0.123 4.123 16 C -0.105 4.105 17 C -0.141 4.141 18 C 0.050 3.950 19 C -0.210 4.210 20 C -0.216 4.216 21 H 0.260 0.740 22 H -0.007 1.007 23 H 0.122 0.878 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.013 0.987 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -3.284 9.543 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.121 4.121 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.073 3.927 10 C -0.041 4.041 11 N -0.234 5.234 12 C -0.079 4.079 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.161 4.161 16 C -0.142 4.142 17 C -0.178 4.178 18 C -0.077 4.077 19 C -0.249 4.249 20 C -0.254 4.254 21 H 0.070 0.930 22 H 0.011 0.989 23 H 0.139 0.861 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.104 -2.825 9.536 10.166 hybrid contribution -0.202 0.147 0.017 0.250 sum 1.902 -2.678 9.553 10.102 Atomic orbital electron populations 1.69870 1.06231 1.26698 1.48476 1.24809 0.94413 0.98701 0.94191 0.86788 0.80753 0.83783 0.77883 1.21160 1.21144 1.19546 1.20342 0.98567 0.90739 1.41547 0.92522 1.18824 0.94370 0.87425 0.92106 1.22099 0.93836 1.01421 0.86775 1.61869 1.35825 1.22984 1.02740 1.22293 0.95349 0.96032 0.94189 1.21688 0.96691 0.97576 0.99017 1.21669 0.96341 0.99657 0.97733 1.21700 0.96310 0.94697 1.03375 1.21533 0.96360 0.96376 0.99951 1.22232 0.98396 0.99466 0.97748 1.22473 0.99118 0.90586 0.95559 1.23025 0.97127 1.08190 0.96510 1.23053 0.95589 1.04543 1.02186 0.92979 0.98861 0.86059 0.93522 0.93167 0.93408 0.90683 0.92152 0.93679 0.88190 0.94005 0.92193 0.93762 0.90038 0.93102 0.96929 0.89463 0.92260 0.90646 0.91037 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.99 11.12 55.43 0.62 -23.38 16 2 C 0.08 2.19 5.03 -17.82 -0.09 2.10 16 3 Si 0.88 21.01 29.60 -169.99 -5.03 15.98 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.48 -12.88 8.98 -34.44 -0.31 -13.19 16 8 H 0.06 1.57 7.91 -52.49 -0.42 1.15 16 9 C 0.07 1.81 1.91 -155.66 -0.30 1.51 16 10 C 0.09 1.98 4.55 -3.83 -0.02 1.96 16 11 N -0.51 -10.21 2.92 -234.61 -0.69 -10.90 16 12 C 0.05 0.88 5.25 -3.67 -0.02 0.86 16 13 C -0.11 -1.87 5.69 -26.71 -0.15 -2.02 16 14 C -0.12 -1.74 5.46 -26.88 -0.15 -1.89 16 15 C -0.12 -2.00 5.50 -26.74 -0.15 -2.15 16 16 C -0.10 -1.55 5.78 -26.53 -0.15 -1.70 16 17 C -0.14 -2.10 5.32 -26.65 -0.14 -2.24 16 18 C 0.05 0.90 3.94 -3.95 -0.02 0.88 16 19 C -0.21 -4.90 9.88 -26.73 -0.26 -5.16 16 20 C -0.22 -4.75 8.32 -26.72 -0.22 -4.97 16 21 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 22 H -0.01 -0.15 7.66 -51.93 -0.40 -0.55 16 23 H 0.12 3.14 5.01 -51.93 -0.26 2.88 16 24 H 0.05 0.74 5.46 -51.93 -0.28 0.46 16 25 H 0.05 0.93 7.34 -51.93 -0.38 0.55 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.48 7.79 -51.93 -0.40 1.07 16 28 H 0.06 0.84 5.42 -51.93 -0.28 0.55 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.10 1.99 6.33 -51.93 -0.33 1.66 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.19 2.85 -51.93 -0.15 1.04 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.01 0.23 7.85 -51.93 -0.41 -0.18 16 37 H 0.09 1.66 4.89 -51.93 -0.25 1.40 16 38 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 39 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.07 1.43 5.81 -51.93 -0.30 1.13 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -26.60 296.13 -9.40 -36.00 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.79 Total: 3.83 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -1.98 Total: -26.01 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.07 Total: -34.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.60 -9.40 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.661 kcal (2) G-P(sol) polarization free energy of solvation -26.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds