Wall clock time and date at job start Sun Mar 29 2020 21:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47160 * 269.99862 * 3 2 1 5 5 H 1.48503 * 109.47137 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47038 * 149.99654 * 3 2 1 7 7 C 1.37880 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99689 * 157.52832 * 7 2 1 9 9 C 1.50696 * 119.99939 * 337.53584 * 7 2 1 10 10 C 1.52994 * 115.54989 * 324.90371 * 9 7 2 11 11 N 1.46900 * 109.47737 * 280.81151 * 10 9 7 12 12 C 1.46977 * 111.00498 * 162.99644 * 11 10 9 13 13 C 1.53212 * 109.33416 * 237.39515 * 12 11 10 14 14 C 1.52829 * 109.36821 * 284.47113 * 13 12 11 15 15 C 1.52883 * 109.60516 * 76.04924 * 14 13 12 16 16 C 1.53096 * 109.38185 * 247.43191 * 15 14 13 17 17 C 1.53288 * 108.78188 * 43.63908 * 16 15 14 18 18 C 1.46788 * 110.99634 * 287.22937 * 11 10 9 19 19 C 1.53001 * 117.52085 * 110.61337 * 9 7 2 20 20 C 1.53006 * 60.00190 * 107.47575 * 19 9 7 21 21 H 0.97005 * 119.99841 * 5.50042 * 1 2 3 22 22 H 1.09004 * 109.47213 * 160.81463 * 10 9 7 23 23 H 1.08999 * 109.47199 * 40.81390 * 10 9 7 24 24 H 1.08998 * 109.49645 * 117.43452 * 12 11 10 25 25 H 1.09001 * 109.49251 * 357.35194 * 12 11 10 26 26 H 1.08992 * 109.49392 * 164.49769 * 13 12 11 27 27 H 1.09002 * 109.48584 * 44.43222 * 13 12 11 28 28 H 1.09003 * 109.44386 * 316.01716 * 14 13 12 29 29 H 1.08998 * 109.45252 * 196.09486 * 14 13 12 30 30 H 1.09001 * 109.48819 * 7.41194 * 15 14 13 31 31 H 1.08998 * 109.48461 * 127.45801 * 15 14 13 32 32 H 1.08998 * 109.57990 * 163.44770 * 16 15 14 33 33 H 1.08998 * 109.58203 * 283.85185 * 16 15 14 34 34 H 1.09005 * 109.48631 * 314.59186 * 17 16 15 35 35 H 1.09002 * 109.47213 * 194.56900 * 17 16 15 36 36 H 1.08995 * 109.37490 * 311.69418 * 18 11 10 37 37 H 1.09000 * 109.37842 * 71.34564 * 18 11 10 38 38 H 1.08999 * 117.49731 * 214.96518 * 19 9 7 39 39 H 1.09001 * 117.49516 * 359.97438 * 19 9 7 40 40 H 1.08999 * 117.49726 * 252.51571 * 20 19 9 41 41 H 1.08998 * 117.51913 * 107.48114 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0230 -1.2298 -0.3570 9 6 1.3368 -2.4494 0.4998 10 6 0.3661 -2.2609 1.6672 11 7 1.1240 -2.1383 2.9196 12 6 0.2910 -1.5637 3.9855 13 6 0.9594 -0.2942 4.5230 14 6 2.1382 -0.6810 5.4154 15 6 3.3159 -1.1231 4.5465 16 6 3.5664 -2.6192 4.7533 17 6 2.2188 -3.3498 4.7537 18 6 1.6852 -3.4331 3.3236 19 6 1.0012 -3.5294 -0.5307 20 6 2.1485 -3.7457 0.4582 21 1 -0.4850 0.8362 -0.0805 22 1 -0.3000 -3.1215 1.7285 23 1 -0.2220 -1.3569 1.5085 24 1 0.1831 -2.2878 4.7930 25 1 -0.6920 -1.3157 3.5851 26 1 0.2368 0.2794 5.1034 27 1 1.3175 0.3093 3.6889 28 1 1.8434 -1.5002 6.0712 29 1 2.4342 0.1775 6.0182 30 1 3.0852 -0.9345 3.4980 31 1 4.2070 -0.5628 4.8294 32 1 4.1889 -3.0007 3.9440 33 1 4.0678 -2.7771 5.7081 34 1 1.5092 -2.8035 5.3752 35 1 2.3511 -4.3560 5.1515 36 1 0.9085 -4.1959 3.2714 37 1 2.4987 -3.7009 2.6493 38 1 0.0888 -4.1056 -0.3769 39 1 1.2631 -3.3319 -1.5702 40 1 3.1653 -3.6906 0.0694 41 1 1.9912 -4.4641 1.2628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:41 Heat of formation + Delta-G solvation = 25.016702 kcal Electronic energy + Delta-G solvation = -18670.591557 eV Core-core repulsion = 16165.025589 eV Total energy + Delta-G solvation = -2505.565969 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42992 -38.18534 -35.05307 -34.21521 -33.59243 -29.58511 -27.59680 -26.96250 -25.85091 -23.37887 -22.44841 -21.97704 -20.86308 -19.82904 -18.21025 -16.85302 -16.63683 -16.24864 -15.74222 -15.52982 -15.00694 -14.81102 -14.39575 -14.17988 -13.84900 -13.47705 -13.05822 -12.79191 -12.63638 -12.55941 -12.48614 -12.29231 -12.14611 -11.77241 -11.67125 -11.51475 -11.38605 -11.15765 -11.04225 -10.91023 -10.69114 -10.36557 -9.85436 -8.68757 -8.06371 -6.01843 1.39036 1.44883 1.55262 2.46154 3.00428 3.27449 3.80439 3.96561 4.10433 4.15741 4.29409 4.32852 4.38463 4.46584 4.55592 4.69283 4.74316 4.76528 4.80780 4.90007 4.95575 4.96428 5.03610 5.13695 5.14725 5.15779 5.20911 5.30719 5.37100 5.43620 5.49478 5.57329 5.60803 5.65748 5.67736 5.92535 6.10508 6.46678 6.61199 6.73524 6.92405 7.53526 8.96988 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.011705 C = 0.009207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.842991 B = 2391.563551 C = 3040.476722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.048 3.952 3 Si 0.931 3.069 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.495 4.495 8 H 0.041 0.959 9 C 0.047 3.953 10 C 0.098 3.902 11 N -0.520 5.520 12 C 0.049 3.951 13 C -0.108 4.108 14 C -0.110 4.110 15 C -0.124 4.124 16 C -0.102 4.102 17 C -0.133 4.133 18 C 0.049 3.951 19 C -0.215 4.215 20 C -0.190 4.190 21 H 0.261 0.739 22 H -0.009 1.009 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.014 0.986 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -3.883 11.759 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.153 4.153 3 Si 0.758 3.242 4 H -0.208 1.208 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.046 3.954 10 C -0.030 4.030 11 N -0.244 5.244 12 C -0.079 4.079 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.162 4.162 16 C -0.139 4.139 17 C -0.170 4.170 18 C -0.078 4.078 19 C -0.253 4.253 20 C -0.228 4.228 21 H 0.070 0.930 22 H 0.009 0.991 23 H 0.110 0.890 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.675 -3.427 11.751 12.530 hybrid contribution -0.368 0.319 -0.700 0.853 sum 2.306 -3.108 11.052 11.710 Atomic orbital electron populations 1.69965 1.07079 1.27187 1.49016 1.25311 0.95011 1.00971 0.94016 0.85981 0.79546 0.80845 0.77812 1.20758 1.20732 1.19803 1.20513 0.98050 0.92460 1.42166 0.94048 1.18922 0.95858 0.87465 0.93135 1.21770 0.93407 0.99694 0.88108 1.61807 1.35805 1.24481 1.02353 1.22363 0.94341 0.96997 0.94170 1.21637 0.97932 0.96735 0.98323 1.21625 0.94741 1.01000 0.97305 1.21640 0.97288 0.96215 1.01035 1.21517 0.96437 0.95016 1.00953 1.22190 0.98228 1.01102 0.95504 1.22489 0.98518 0.89399 0.97407 1.23012 0.98327 1.08022 0.95976 1.23014 0.94889 1.03118 1.01742 0.92953 0.99130 0.88976 0.90899 0.94789 0.91451 0.94492 0.90115 0.92104 0.92480 0.93236 0.93372 0.91000 0.89310 0.90574 0.96818 0.90949 0.91195 0.91741 0.91214 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.19 11.12 21.45 0.24 -49.95 16 2 C 0.05 2.62 5.03 84.65 0.43 3.04 16 3 Si 0.93 44.02 29.60 68.60 2.03 46.05 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.49 -27.51 8.98 25.60 0.23 -27.28 16 8 H 0.04 2.36 7.91 -2.91 -0.02 2.33 16 9 C 0.05 2.35 1.91 -52.93 -0.10 2.25 16 10 C 0.10 4.60 4.55 86.30 0.39 4.99 16 11 N -0.52 -20.68 2.92 -896.18 -2.62 -23.30 16 12 C 0.05 1.69 5.25 86.36 0.45 2.14 16 13 C -0.11 -3.49 5.69 30.61 0.17 -3.32 16 14 C -0.11 -2.96 5.46 30.50 0.17 -2.80 16 15 C -0.12 -3.82 5.50 30.59 0.17 -3.65 16 16 C -0.10 -2.72 5.78 30.72 0.18 -2.54 16 17 C -0.13 -3.50 5.32 30.65 0.16 -3.34 16 18 C 0.05 1.67 3.94 86.28 0.34 2.01 16 19 C -0.21 -10.06 9.88 30.60 0.30 -9.76 16 20 C -0.19 -8.27 8.32 30.60 0.25 -8.02 16 21 H 0.26 13.99 8.32 -92.70 -0.77 13.22 16 22 H -0.01 -0.43 7.66 -2.38 -0.02 -0.45 16 23 H 0.09 4.91 5.01 -2.39 -0.01 4.90 16 24 H 0.07 2.11 5.46 -2.39 -0.01 2.10 16 25 H 0.03 1.26 7.34 -2.39 -0.02 1.24 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.47 7.79 -2.39 -0.02 1.45 16 28 H 0.08 1.88 5.42 -2.39 -0.01 1.86 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 2.28 6.33 -2.39 -0.02 2.26 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.40 7.84 -2.39 -0.02 1.38 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 2.21 2.85 -2.38 -0.01 2.21 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.01 0.46 7.85 -2.39 -0.02 0.44 16 37 H 0.07 2.66 4.89 -2.39 -0.01 2.65 16 38 H 0.07 3.08 8.09 -2.39 -0.02 3.06 16 39 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.09 3.60 5.81 -2.39 -0.01 3.59 16 Total: -1.00 -57.87 296.13 3.79 -54.08 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.99 Total: 19.38 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 3.15 Total: -46.26 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -2.38 Total: -73.25 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -57.87 3.79 -54.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.097 kcal (2) G-P(sol) polarization free energy of solvation -57.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds